jgi.p|Nanoce1779_2|639027, mRNA_4257 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639027
Unique Name	mRNA_4257
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1410
Alignment location	scaffold_10:123803..125212 +

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Properties


Property Name	Value
TranscriptId	639113
Track	FilteredModels2
ProteinId	639027

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:123803..125212 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639027	gene_4257	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639027	mRNA_4257-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4257	CDS_4257	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:123803..125212+
coding sequence from alignment at scaffold_10:123803..125212+

mRNA sequence

>mRNA_4257 ID=mRNA_4257|Name=jgi.p|Nanoce1779_2|639027|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
ATGGCCAATAGCAGCGCAAGCCGCCATGGCGGTGGAATATTTGTCCTACT
CAACCTGCTGCTGGGCGTGTTGACGTTTGTCGTCTTCTTGAGTACGCGCC
GCATCATCCTCGCCCCCTTCCAAGCCATCCTCCTGAACGCCCTAGCATGC
GGTATACTTGTCGGTGCTGTCCTGGGTATAATTTTACCGGAAGGGTTTCA
TGCACAACAAGACGGGAAGGAGGGCTCGGAGGCAAGCGGGATGCCTATAT
TGGTCGGATATGCGCTGCAAGTGACCCTCGAGAACGTTGGAAGTTTCTTC
AATGGACATGGCCACTCTCGCGACCACACGGTCCCATCAAAGCATTCGCC
TTTGCCTCATGCGCCTCTTGATGAAGATAGTGACGATGAGGAAGGGGAGG
GTGTGGAGCTGGATGGTGGTGTGGAGTATTTGGGGGAAGAGGGGAAAGGC
AAATCCCGCGGCAAGGACGTCACCCAGCAGCTTTTCTCCGCTTCGCACAT
CTCGTCATCTACGTGTGCGGGCCGCTCCATCACCCCTAACAGAGAGATTG
TGATTGAGTTATTGAGTTTGAACGGCGCAGCATCTCCACCCCTTTCTTCG
GAAAATCCGACAGCAGCGGCAACAGCAGCAATACGAGAGGAAAGGGAGCG
GATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGTCAGCAACCGGA
GCCCTCACCGGCATAATCTACACCAGCATGCTCATCACCACCTTTCTATC
GGGAGCGCCGAAGGTCTCGTGGACTTCTCCTCTTCCTCCTCCGCCCCCGT
CGCCGCCATAACAGAAATAAAAGGCTGCTGTATTTTCCAACCGAGCTTCG
TTGGTCTCCTTATCCATTGTCTTGCGGACGGCATTGCTATAGGAGCCTCT
TCATTAGGAAATGCTTCTTTGCTGGGAGCAGTTTTTCTTGCGCTGGTAAT
ACATAAGCTGCCGGTTGCCTTTGCAACTGGCACGTGGGTCACCACCATCA
CAGCAGCCACAAAACGGCCACCGTACCGTCTGCTGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAAAAGGGAGATCTGAAGTGTTTTGGTACCA
CGCCTTGGCGTTCGCATCGGCTTCACCCTTCGCTGCGTTCCTCACGCGCG
TCATCCTGCAGCTGCAACGACGACGGCATCAGCAGGACGAGAGCAGCGGC
AGCAGCAATATTTTCGTGGGACAAGTTTTATTGTTTTCCGGCGGAACGTT
TCTGTATGTAAGTGTGGGGCATATATTGCCTGAGTTGATGCATTCGTCGC
AGATGACGAAAGGCCCGATGGGGAGGAGGTGGCTGGTGTTGTTGGTGGTG
ATAGTCGGAATGTTTGCTGTGCCGTTGCTAGCTGGACTGGCGCCAGAGCA
TGGACATTGA

protein sequence of jgi.p|Nanoce1779_2|639027

>mRNA_4257-protein ID=mRNA_4257-protein|Name=jgi.p|Nanoce1779_2|639027|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MANSSASRHGGGIFVLLNLLLGVLTFVVFLSTRRIILAPFQAILLNALAC
GILVGAVLGIILPEGFHAQQDGKEGSEASGMPILVGYALQVTLENVGSFF
NGHGHSRDHTVPSKHSPLPHAPLDEDSDDEEGEGVELDGGVEYLGEEGKG
KSRGKDVTQQLFSASHISSSTCAGRSITPNREIVIELLSLNGAASPPLSS
ENPTAAATAAIREERERISSSSSSSSSSSVSNRSPHRHNLHQHAHHHLSI
GSAEGLVDFSSSSSAPVAAITEIKGCCIFQPSFVGLLIHCLADGIAIGAS
SLGNASLLGAVFLALVIHKLPVAFATGTWVTTITAATKRPPYRLLQQQQQ
QQQQQQQKGRSEVFWYHALAFASASPFAAFLTRVILQLQRRRHQQDESSG
SSNIFVGQVLLFSGGTFLYVSVGHILPELMHSSQMTKGPMGRRWLVLLVV
IVGMFAVPLLAGLAPEHGH*

mRNA from alignment at scaffold_10:123803..125212+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4257 ID=mRNA_4257|Name=jgi.p|Nanoce1779_2|639027|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_10:123803..125212+ (Nannochloropsis oceanica)
ATGGCCAATAGCAGCGCAAGCCGCCATGGCGGTGGAATATTTGTCCTACT
CAACCTGCTGCTGGGCGTGTTGACGTTTGTCGTCTTCTTGAGTACGCGCC
GCATCATCCTCGCCCCCTTCCAAGCCATCCTCCTGAACGCCCTAGCATGC
GGTATACTTGTCGGTGCTGTCCTGGGTATAATTTTACCGGAAGGGTTTCA
TGCACAACAAGACGGGAAGGAGGGCTCGGAGGCAAGCGGGATGCCTATAT
TGGTCGGATATGCGCTGCAAGTGACCCTCGAGAACGTTGGAAGTTTCTTC
AATGGACATGGCCACTCTCGCGACCACACGGTCCCATCAAAGCATTCGCC
TTTGCCTCATGCGCCTCTTGATGAAGATAGTGACGATGAGGAAGGGGAGG
GTGTGGAGCTGGATGGTGGTGTGGAGTATTTGGGGGAAGAGGGGAAAGGC
AAATCCCGCGGCAAGGACGTCACCCAGCAGCTTTTCTCCGCTTCGCACAT
CTCGTCATCTACGTGTGCGGGCCGCTCCATCACCCCTAACAGAGAGATTG
TGATTGAGTTATTGAGTTTGAACGGCGCAGCATCTCCACCCCTTTCTTCG
GAAAATCCGACAGCAGCGGCAACAGCAGCAATACGAGAGGAAAGGGAGCG
GATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGTCAGCAACCGGA
GCCCTCACCGGCATAATCTACACCAGCATGCTCATCACCACCTTTCTATC
GGGAGCGCCGAAGGTCTCGTGGACTTCTCCTCTTCCTCCTCCGCCCCCGT
CGCCGCCATAACAGAAATAAAAGGCTGCTGTATTTTCCAACCGAGCTTCG
TTGGTCTCCTTATCCATTGTCTTGCGGACGGCATTGCTATAGGAGCCTCT
TCATTAGGAAATGCTTCTTTGCTGGGAGCAGTTTTTCTTGCGCTGGTAAT
ACATAAGCTGCCGGTTGCCTTTGCAACTGGCACGTGGGTCACCACCATCA
CAGCAGCCACAAAACGGCCACCGTACCGTCTGCTGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAAAAGGGAGATCTGAAGTGTTTTGGTACCA
CGCCTTGGCGTTCGCATCGGCTTCACCCTTCGCTGCGTTCCTCACGCGCG
TCATCCTGCAGCTGCAACGACGACGGCATCAGCAGGACGAGAGCAGCGGC
AGCAGCAATATTTTCGTGGGACAAGTTTTATTGTTTTCCGGCGGAACGTT
TCTGTATGTAAGTGTGGGGCATATATTGCCTGAGTTGATGCATTCGTCGC
AGATGACGAAAGGCCCGATGGGGAGGAGGTGGCTGGTGTTGTTGGTGGTG
ATAGTCGGAATGTTTGCTGTGCCGTTGCTAGCTGGACTGGCGCCAGAGCA
TGGACATTGA

Coding sequence (CDS) from alignment at scaffold_10:123803..125212+

>mRNA_4257 ID=mRNA_4257|Name=jgi.p|Nanoce1779_2|639027|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_10:123803..125212+ (Nannochloropsis oceanica)
ATGGCCAATAGCAGCGCAAGCCGCCATGGCGGTGGAATATTTGTCCTACT
CAACCTGCTGCTGGGCGTGTTGACGTTTGTCGTCTTCTTGAGTACGCGCC
GCATCATCCTCGCCCCCTTCCAAGCCATCCTCCTGAACGCCCTAGCATGC
GGTATACTTGTCGGTGCTGTCCTGGGTATAATTTTACCGGAAGGGTTTCA
TGCACAACAAGACGGGAAGGAGGGCTCGGAGGCAAGCGGGATGCCTATAT
TGGTCGGATATGCGCTGCAAGTGACCCTCGAGAACGTTGGAAGTTTCTTC
AATGGACATGGCCACTCTCGCGACCACACGGTCCCATCAAAGCATTCGCC
TTTGCCTCATGCGCCTCTTGATGAAGATAGTGACGATGAGGAAGGGGAGG
GTGTGGAGCTGGATGGTGGTGTGGAGTATTTGGGGGAAGAGGGGAAAGGC
AAATCCCGCGGCAAGGACGTCACCCAGCAGCTTTTCTCCGCTTCGCACAT
CTCGTCATCTACGTGTGCGGGCCGCTCCATCACCCCTAACAGAGAGATTG
TGATTGAGTTATTGAGTTTGAACGGCGCAGCATCTCCACCCCTTTCTTCG
GAAAATCCGACAGCAGCGGCAACAGCAGCAATACGAGAGGAAAGGGAGCG
GATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGTCAGCAACCGGA
GCCCTCACCGGCATAATCTACACCAGCATGCTCATCACCACCTTTCTATC
GGGAGCGCCGAAGGTCTCGTGGACTTCTCCTCTTCCTCCTCCGCCCCCGT
CGCCGCCATAACAGAAATAAAAGGCTGCTGTATTTTCCAACCGAGCTTCG
TTGGTCTCCTTATCCATTGTCTTGCGGACGGCATTGCTATAGGAGCCTCT
TCATTAGGAAATGCTTCTTTGCTGGGAGCAGTTTTTCTTGCGCTGGTAAT
ACATAAGCTGCCGGTTGCCTTTGCAACTGGCACGTGGGTCACCACCATCA
CAGCAGCCACAAAACGGCCACCGTACCGTCTGCTGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAAAAGGGAGATCTGAAGTGTTTTGGTACCA
CGCCTTGGCGTTCGCATCGGCTTCACCCTTCGCTGCGTTCCTCACGCGCG
TCATCCTGCAGCTGCAACGACGACGGCATCAGCAGGACGAGAGCAGCGGC
AGCAGCAATATTTTCGTGGGACAAGTTTTATTGTTTTCCGGCGGAACGTT
TCTGTATGTAAGTGTGGGGCATATATTGCCTGAGTTGATGCATTCGTCGC
AGATGACGAAAGGCCCGATGGGGAGGAGGTGGCTGGTGTTGTTGGTGGTG
ATAGTCGGAATGTTTGCTGTGCCGTTGCTAGCTGGACTGGCGCCAGAGCA
TGGACATTGA

Synonyms

Publications