jgi.p|Nanoce1779_2|588998, mRNA_4402 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588998
Unique NamemRNA_4402
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length953
Alignment locationscaffold_10:504455..505407 -

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Properties
Property NameValue
TranscriptId589084
TrackFilteredModels2
ProteinId588998
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:504455..505407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588998gene_4402Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588998mRNA_4402-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4402CDS_4402Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4402 ID=mRNA_4402|Name=jgi.p|Nanoce1779_2|588998|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
TTGAGCTTGTTTCCTGCAGGATCGTCTTTATTCTTTTCTATTGGGTGTTT
CCCTTCCCAGTCCCGTGATTTTTGGTGACATGCGTGCGTTTATCGTCTTT
ATTGTTGTTGGTTTCAATTCGTAGGTCTCCCTCTCTCCCTCTCCATCTGT
TGTGGATGATGTATGACGTTTTTCGATCTCTTCTCGTTCTCTTGCTTCTG
CTTCATCGTCTTGTCGTCCTTCTTCTTGTTCTCGCTTGCACGGTCTTGCA
CATCTTTTCCTTCTTCCTCTCTCTCTTGCTCTTCCTCATTTTTTCTCTGC
CTCTTCCTCTTCTTCTTTCTTTTTCATTTCTTCTCCATCATTGTCTCGTA
AGCCTGTGTGTACCCTGCCCTTCTCCTTGTATGTTCTTCTCCCGTGTGCA
CCGTCCCTCCCATCCCATCATTTATTCTATGCCGTTCTCTGACGACCTTC
GTCGTCGTCTCAGGCACGCGCGCATCCTTTTTATAGGTCACGACGAATAC
GATGACATCAGACACACACACAAGACCCCACAAACCCACACAGACACATA
CACGAGATCATACACATACACAGCCGACCCCCATCAAAGAGAGGGGTACC
AGACAAGCATGGACACAAAAGAAAATACACGCACACTTTCCCACTCGCTC
GACCCTACTTCATCGGAATTATCGTCACCACGGCCTTCCTCGTCTTCTGT
CTCTTCAGCATCATCGTCGTTCTCTCCTCCTCATTCAAAAACATCACGCC
GAAAGAACACAAGGCAGAGGATACCATCCTCCCTCCCTCGTTTCTTTCCT
CTCCCCTTTCCTTCCCTCTCCACGTTAGAGGGGTGAACGTTCAAGATCGA
ATCTCCCATTCTTCTTTCCTCTTTCTCCACCTCTTCCCTTAACCTCCCCC
TTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTC
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protein sequence of jgi.p|Nanoce1779_2|588998

>mRNA_4402-protein ID=mRNA_4402-protein|Name=jgi.p|Nanoce1779_2|588998|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MMYDVFRSLLVLLLLLHRLVVLLLVLACTVLHIFSFFLSLLLFLIFSLPL
PLLLSFSFLLHHCLVSLCVPCPSPCMFFSRVHRPSHPIIYSMPFSDDLRR
RLRHARILFIGHDEYDDIRHTHKTPQTHTDTYTRSYTYTADPHQREGYQT
SMDTKENTRTLSHSLDPTSSELSSPRPSSSSVSSASSSFSPPHSKTSRRK
NTRQRIPSSLPRFFPLPFPSLSTLEG*
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mRNA from alignment at scaffold_10:504455..505407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4402 ID=mRNA_4402|Name=jgi.p|Nanoce1779_2|588998|organism=Nannochloropsis oceanica|type=mRNA|length=953bp|location=Sequence derived from alignment at scaffold_10:504455..505407- (Nannochloropsis oceanica)
TTGAGCTTGTTTCCTGCAGGATCGTCTTTATTCTTTTCTATTGGGTGTTT
CCCTTCCCAGTCCCGTGATTTTTGGTGACATGCGTGCGTTTATCGTCTTT
ATTGTTGTTGGTTTCAATTCGTAGGTCTCCCTCTCTCCCTCTCCATCTGT
TGTGGATGATGTATGACGTTTTTCGATCTCTTCTCGTTCTCTTGCTTCTG
CTTCATCGTCTTGTCGTCCTTCTTCTTGTTCTCGCTTGCACGGTCTTGCA
CATCTTTTCCTTCTTCCTCTCTCTCTTGCTCTTCCTCATTTTTTCTCTGC
CTCTTCCTCTTCTTCTTTCTTTTTCATTTCTTCTCCATCATTGTCTCGTA
AGCCTGTGTGTACCCTGCCCTTCTCCTTGTATGTTCTTCTCCCGTGTGCA
CCGTCCCTCCCATCCCATCATTTATTCTATGCCGTTCTCTGACGACCTTC
GTCGTCGTCTCAGGCACGCGCGCATCCTTTTTATAGGTCACGACGAATAC
GATGACATCAGACACACACACAAGACCCCACAAACCCACACAGACACATA
CACGAGATCATACACATACACAGCCGACCCCCATCAAAGAGAGGGGTACC
AGACAAGCATGGACACAAAAGAAAATACACGCACACTTTCCCACTCGCTC
GACCCTACTTCATCGGAATTATCGTCACCACGGCCTTCCTCGTCTTCTGT
CTCTTCAGCATCATCGTCGTTCTCTCCTCCTCATTCAAAAACATCACGCC
GAAAGAACACAAGGCAGAGGATACCATCCTCCCTCCCTCGTTTCTTTCCT
CTCCCCTTTCCTTCCCTCTCCACGTTAGAGGGGTGAACGTTCAAGATCGA
ATCTCCCATTCTTCTTTCCTCTTTCTCCACCTCTTCCCTTAACCTCCCCC
TTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTC
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Coding sequence (CDS) from alignment at scaffold_10:504455..505407-

>mRNA_4402 ID=mRNA_4402|Name=jgi.p|Nanoce1779_2|588998|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_10:504455..505407- (Nannochloropsis oceanica)
ATGATGTATGACGTTTTTCGATCTCTTCTCGTTCTCTTGCTTCTGCTTCA
TCGTCTTGTCGTCCTTCTTCTTGTTCTCGCTTGCACGGTCTTGCACATCT
TTTCCTTCTTCCTCTCTCTCTTGCTCTTCCTCATTTTTTCTCTGCCTCTT
CCTCTTCTTCTTTCTTTTTCATTTCTTCTCCATCATTGTCTCGTAAGCCT
GTGTGTACCCTGCCCTTCTCCTTGTATGTTCTTCTCCCGTGTGCACCGTC
CCTCCCATCCCATCATTTATTCTATGCCGTTCTCTGACGACCTTCGTCGT
CGTCTCAGGCACGCGCGCATCCTTTTTATAGGTCACGACGAATACGATGA
CATCAGACACACACACAAGACCCCACAAACCCACACAGACACATACACGA
GATCATACACATACACAGCCGACCCCCATCAAAGAGAGGGGTACCAGACA
AGCATGGACACAAAAGAAAATACACGCACACTTTCCCACTCGCTCGACCC
TACTTCATCGGAATTATCGTCACCACGGCCTTCCTCGTCTTCTGTCTCTT
CAGCATCATCGTCGTTCTCTCCTCCTCATTCAAAAACATCACGCCGAAAG
AACACAAGGCAGAGGATACCATCCTCCCTCCCTCGTTTCTTTCCTCTCCC
CTTTCCTTCCCTCTCCACGTTAGAGGGGTGA
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Synonyms
Publications