jgi.p|Nanoce1779_2|589090, mRNA_4433 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589090
Unique Name	mRNA_4433
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2275
Alignment location	scaffold_10:582973..585247 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589176
Track	FilteredModels2
ProteinId	589090

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:582973..585247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589090	gene_4433	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589090	mRNA_4433-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4433	CDS_4433	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:582973..585247+
coding sequence from alignment at scaffold_10:582973..585247+

mRNA sequence

>mRNA_4433 ID=mRNA_4433|Name=jgi.p|Nanoce1779_2|589090|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp
AGGTGCCTTTCCACCCCTTTTGTTGCTGCAGCCTGCCTGCCGTGCGGTTG
CCCTGGGACGAGTTGAGCTTGAGGACGGGAAGCAAGGCCCCGCCGTCATC
TCCCGAGGTCGACCAATCACTCACCCCACATTACGACAACTATGTGCCCT
CTCCGCATCTTCTTCGCCTTGTTGCAGCTCCACCTGCTCTTCATGCTAGG
CATGAGTGGTAGCTCTGCGGCGTCCGCGAGCAGTGCCAAAGCTGGCGGCC
GCAACTGCCCTTTCCGAGGCTGGGGTGGGAGCAAGGCCACGAACACGGTG
ACGACCGCCGCCTTCTTGGCTCCGGCCACCCTTCCCCGCAACATCGCCGC
CCCCCGTGCACCACCCAGCGGTGCCGGCACCGCCGTTTTGGATGAGGGCG
GGTTCCGCACGTCTTCGGGGCTCTTTGTGGCGCCCTCAACGGGCAGCAAG
GTGGAATCCTCGATGCGCAAGCGTCGCGTGGGGGCTGCTCTGAAGCCGCT
CTATGCGGCAACCGTTGCCCCTCCTATTTCGACTGGCGTGGTGGCCGCGG
CAGCTGAAAAGGAGGAGAAAGCAGAAGGCAAGAAGAAGCGCAAGGCCACG
AGCATGACGCCTTTGGAAGTGCATGTGATTGGCTTGTCGCACCACAACGC
CGCGGTGGATGTACGTGAGAAGCTCTCCATTCCCGAAGCGCAATGGAACG
ACGCCGCCAACAAATTGTGTGAGAGCAATGTCATCGCTGAGGCCTGCACC
CTGTCGACGTGCAATCGTTTCGAGATCTACTTTGCGGCTCATGATTCCTA
CGCTGCCTTTCACGAGGCGACAGCTTTCTTGGAGCGTCACTCGGGCCTGC
CCCAGAAAGTTTTAAGAAAGAATTTGTTCCTCCTGTCGGGGGAGGATGCT
ATCTGGCACTTGATGCGGGTATCAGGCGGCTTGGACTCGCTGGTGGTAGG
GGAGGGTCAGATTTTGAGTCAGGTGAAACAGTGCTATAACCACGGGATGG
AGGAGGATGGGAAGGGCGGCAAAGTCGTGTCGCGGATGCTGAACTCGGCC
GTGGCGGCCGGGAAGCGTGTGCGCTCTGAAACGGGAATCAGCAAGGGTGC
TGTCTCCATTTCGTCAGCTGCGGTAGAGTTTTCTCAATTGCGTTGCCCCC
AGGACTTGGGAAAGACGTTTGAGGAAAGTAAGGTGGCCATTATTGGCGCG
GGGAAAATGTCAAGGTTACTCATGATCCACATGGCGTCCCAAGGCATGAA
GAGCGTGACGCTGATGAACCGAGGAAGGGAGAGGGCAGAGACCTTGGCTG
CGGAATTTCCCGAGATGGAGGTGGACATCCGACTGATGGATGAGTTGTGG
CCGGTCATGCACTCGCATGACGTGGTCTACACCTCGACCTCAGCGCAAGG
GTGCTTGCTTACCAAGGACAACATCCAAGACGCTGGTTTGGCTCCCGGTA
AAGTCATTGTCGACATATCTGTCCCCCGCAATGTGGAGACGGAGGTGGCT
GACATAGAGGGCATGTATTCGTACAACGTGGATCATCTGAAAGAGGTGGT
TGACCGCAACACAGCCACGCGCAAGAAGCAGATGCTCGAGGCGGAGGATT
TGCTGGTGGAAGAGATGGAGAAATTTCGCTCGTGGCAGTTCTCTCTCGGC
GCAGTCCCGGCGCTGATGAAGCTCCAGGAGAAGGCAGAGACGATGCGGAT
GGAGGAGTTGAAAAAGGCGTCGAAAAAACTCAATAATCTCTCGGACAAGG
AACTCCAGACGGTTGAGAGGTTGACCAAGGGGATTGTGAACAAGCTGCTG
CACGGACCTATGTCCCACTTAAGGGCAACGGAGGACTTGGAGAAGAACCT
AGTGGCGCTGAAGACATTGAAGGCCGTGTTTGAGCTCTAATATGAGAAAT
AAGGGGAACATAACTTGGTTTAGTTAATATTGAAATTAAAGCATTGTTTT
CAGGCGCTTTTCGCGCGGGAGAAGAAATCATTAGTGAAGGCGAGTGTGTG
AGGTGCCTCGGGGAAAGAGGACAGGAAGGGAAGTGAGTTCAACATCGTCA
TCATCAACTCGAGTGTACAATGTCATCGATAAATATTTCTTTCAGACTAT
ATCAAGTGCCAGGCTACGATGTCATGTCCATTTTGGTGATGAAGGATGGA
GAGTCAGACTACGGCAGAGCAGGTAGGGGAGCGTAGGCTTTCTTGTGTCT
ATTGGATGGACGGGGGGGAAGAATGACAATTCAGAGTATGGAGTCACGAA
GGAAAAAAATGGAACTAGAGCGAGA

protein sequence of jgi.p|Nanoce1779_2|589090

>mRNA_4433-protein ID=mRNA_4433-protein|Name=jgi.p|Nanoce1779_2|589090|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MCPLRIFFALLQLHLLFMLGMSGSSAASASSAKAGGRNCPFRGWGGSKAT
NTVTTAAFLAPATLPRNIAAPRAPPSGAGTAVLDEGGFRTSSGLFVAPST
GSKVESSMRKRRVGAALKPLYAATVAPPISTGVVAAAAEKEEKAEGKKKR
KATSMTPLEVHVIGLSHHNAAVDVREKLSIPEAQWNDAANKLCESNVIAE
ACTLSTCNRFEIYFAAHDSYAAFHEATAFLERHSGLPQKVLRKNLFLLSG
EDAIWHLMRVSGGLDSLVVGEGQILSQVKQCYNHGMEEDGKGGKVVSRML
NSAVAAGKRVRSETGISKGAVSISSAAVEFSQLRCPQDLGKTFEESKVAI
IGAGKMSRLLMIHMASQGMKSVTLMNRGRERAETLAAEFPEMEVDIRLMD
ELWPVMHSHDVVYTSTSAQGCLLTKDNIQDAGLAPGKVIVDISVPRNVET
EVADIEGMYSYNVDHLKEVVDRNTATRKKQMLEAEDLLVEEMEKFRSWQF
SLGAVPALMKLQEKAETMRMEELKKASKKLNNLSDKELQTVERLTKGIVN
KLLHGPMSHLRATEDLEKNLVALKTLKAVFEL*

mRNA from alignment at scaffold_10:582973..585247+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4433 ID=mRNA_4433|Name=jgi.p|Nanoce1779_2|589090|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at scaffold_10:582973..585247+ (Nannochloropsis oceanica)
AGGTGCCTTTCCACCCCTTTTGTTGCTGCAGCCTGCCTGCCGTGCGGTTG
CCCTGGGACGAGTTGAGCTTGAGGACGGGAAGCAAGGCCCCGCCGTCATC
TCCCGAGGTCGACCAATCACTCACCCCACATTACGACAACTATGTGCCCT
CTCCGCATCTTCTTCGCCTTGTTGCAGCTCCACCTGCTCTTCATGCTAGG
CATGAGTGGTAGCTCTGCGGCGTCCGCGAGCAGTGCCAAAGCTGGCGGCC
GCAACTGCCCTTTCCGAGGCTGGGGTGGGAGCAAGGCCACGAACACGGTG
ACGACCGCCGCCTTCTTGGCTCCGGCCACCCTTCCCCGCAACATCGCCGC
CCCCCGTGCACCACCCAGCGGTGCCGGCACCGCCGTTTTGGATGAGGGCG
GGTTCCGCACGTCTTCGGGGCTCTTTGTGGCGCCCTCAACGGGCAGCAAG
GTGGAATCCTCGATGCGCAAGCGTCGCGTGGGGGCTGCTCTGAAGCCGCT
CTATGCGGCAACCGTTGCCCCTCCTATTTCGACTGGCGTGGTGGCCGCGG
CAGCTGAAAAGGAGGAGAAAGCAGAAGGCAAGAAGAAGCGCAAGGCCACG
AGCATGACGCCTTTGGAAGTGCATGTGATTGGCTTGTCGCACCACAACGC
CGCGGTGGATGTACGTGAGAAGCTCTCCATTCCCGAAGCGCAATGGAACG
ACGCCGCCAACAAATTGTGTGAGAGCAATGTCATCGCTGAGGCCTGCACC
CTGTCGACGTGCAATCGTTTCGAGATCTACTTTGCGGCTCATGATTCCTA
CGCTGCCTTTCACGAGGCGACAGCTTTCTTGGAGCGTCACTCGGGCCTGC
CCCAGAAAGTTTTAAGAAAGAATTTGTTCCTCCTGTCGGGGGAGGATGCT
ATCTGGCACTTGATGCGGGTATCAGGCGGCTTGGACTCGCTGGTGGTAGG
GGAGGGTCAGATTTTGAGTCAGGTGAAACAGTGCTATAACCACGGGATGG
AGGAGGATGGGAAGGGCGGCAAAGTCGTGTCGCGGATGCTGAACTCGGCC
GTGGCGGCCGGGAAGCGTGTGCGCTCTGAAACGGGAATCAGCAAGGGTGC
TGTCTCCATTTCGTCAGCTGCGGTAGAGTTTTCTCAATTGCGTTGCCCCC
AGGACTTGGGAAAGACGTTTGAGGAAAGTAAGGTGGCCATTATTGGCGCG
GGGAAAATGTCAAGGTTACTCATGATCCACATGGCGTCCCAAGGCATGAA
GAGCGTGACGCTGATGAACCGAGGAAGGGAGAGGGCAGAGACCTTGGCTG
CGGAATTTCCCGAGATGGAGGTGGACATCCGACTGATGGATGAGTTGTGG
CCGGTCATGCACTCGCATGACGTGGTCTACACCTCGACCTCAGCGCAAGG
GTGCTTGCTTACCAAGGACAACATCCAAGACGCTGGTTTGGCTCCCGGTA
AAGTCATTGTCGACATATCTGTCCCCCGCAATGTGGAGACGGAGGTGGCT
GACATAGAGGGCATGTATTCGTACAACGTGGATCATCTGAAAGAGGTGGT
TGACCGCAACACAGCCACGCGCAAGAAGCAGATGCTCGAGGCGGAGGATT
TGCTGGTGGAAGAGATGGAGAAATTTCGCTCGTGGCAGTTCTCTCTCGGC
GCAGTCCCGGCGCTGATGAAGCTCCAGGAGAAGGCAGAGACGATGCGGAT
GGAGGAGTTGAAAAAGGCGTCGAAAAAACTCAATAATCTCTCGGACAAGG
AACTCCAGACGGTTGAGAGGTTGACCAAGGGGATTGTGAACAAGCTGCTG
CACGGACCTATGTCCCACTTAAGGGCAACGGAGGACTTGGAGAAGAACCT
AGTGGCGCTGAAGACATTGAAGGCCGTGTTTGAGCTCTAATATGAGAAAT
AAGGGGAACATAACTTGGTTTAGTTAATATTGAAATTAAAGCATTGTTTT
CAGGCGCTTTTCGCGCGGGAGAAGAAATCATTAGTGAAGGCGAGTGTGTG
AGGTGCCTCGGGGAAAGAGGACAGGAAGGGAAGTGAGTTCAACATCGTCA
TCATCAACTCGAGTGTACAATGTCATCGATAAATATTTCTTTCAGACTAT
ATCAAGTGCCAGGCTACGATGTCATGTCCATTTTGGTGATGAAGGATGGA
GAGTCAGACTACGGCAGAGCAGGTAGGGGAGCGTAGGCTTTCTTGTGTCT
ATTGGATGGACGGGGGGGAAGAATGACAATTCAGAGTATGGAGTCACGAA
GGAAAAAAATGGAACTAGAGCGAGA

Coding sequence (CDS) from alignment at scaffold_10:582973..585247+

>mRNA_4433 ID=mRNA_4433|Name=jgi.p|Nanoce1779_2|589090|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at scaffold_10:582973..585247+ (Nannochloropsis oceanica)
ATGTGCCCTCTCCGCATCTTCTTCGCCTTGTTGCAGCTCCACCTGCTCTT
CATGCTAGGCATGAGTGGTAGCTCTGCGGCGTCCGCGAGCAGTGCCAAAG
CTGGCGGCCGCAACTGCCCTTTCCGAGGCTGGGGTGGGAGCAAGGCCACG
AACACGGTGACGACCGCCGCCTTCTTGGCTCCGGCCACCCTTCCCCGCAA
CATCGCCGCCCCCCGTGCACCACCCAGCGGTGCCGGCACCGCCGTTTTGG
ATGAGGGCGGGTTCCGCACGTCTTCGGGGCTCTTTGTGGCGCCCTCAACG
GGCAGCAAGGTGGAATCCTCGATGCGCAAGCGTCGCGTGGGGGCTGCTCT
GAAGCCGCTCTATGCGGCAACCGTTGCCCCTCCTATTTCGACTGGCGTGG
TGGCCGCGGCAGCTGAAAAGGAGGAGAAAGCAGAAGGCAAGAAGAAGCGC
AAGGCCACGAGCATGACGCCTTTGGAAGTGCATGTGATTGGCTTGTCGCA
CCACAACGCCGCGGTGGATGTACGTGAGAAGCTCTCCATTCCCGAAGCGC
AATGGAACGACGCCGCCAACAAATTGTGTGAGAGCAATGTCATCGCTGAG
GCCTGCACCCTGTCGACGTGCAATCGTTTCGAGATCTACTTTGCGGCTCA
TGATTCCTACGCTGCCTTTCACGAGGCGACAGCTTTCTTGGAGCGTCACT
CGGGCCTGCCCCAGAAAGTTTTAAGAAAGAATTTGTTCCTCCTGTCGGGG
GAGGATGCTATCTGGCACTTGATGCGGGTATCAGGCGGCTTGGACTCGCT
GGTGGTAGGGGAGGGTCAGATTTTGAGTCAGGTGAAACAGTGCTATAACC
ACGGGATGGAGGAGGATGGGAAGGGCGGCAAAGTCGTGTCGCGGATGCTG
AACTCGGCCGTGGCGGCCGGGAAGCGTGTGCGCTCTGAAACGGGAATCAG
CAAGGGTGCTGTCTCCATTTCGTCAGCTGCGGTAGAGTTTTCTCAATTGC
GTTGCCCCCAGGACTTGGGAAAGACGTTTGAGGAAAGTAAGGTGGCCATT
ATTGGCGCGGGGAAAATGTCAAGGTTACTCATGATCCACATGGCGTCCCA
AGGCATGAAGAGCGTGACGCTGATGAACCGAGGAAGGGAGAGGGCAGAGA
CCTTGGCTGCGGAATTTCCCGAGATGGAGGTGGACATCCGACTGATGGAT
GAGTTGTGGCCGGTCATGCACTCGCATGACGTGGTCTACACCTCGACCTC
AGCGCAAGGGTGCTTGCTTACCAAGGACAACATCCAAGACGCTGGTTTGG
CTCCCGGTAAAGTCATTGTCGACATATCTGTCCCCCGCAATGTGGAGACG
GAGGTGGCTGACATAGAGGGCATGTATTCGTACAACGTGGATCATCTGAA
AGAGGTGGTTGACCGCAACACAGCCACGCGCAAGAAGCAGATGCTCGAGG
CGGAGGATTTGCTGGTGGAAGAGATGGAGAAATTTCGCTCGTGGCAGTTC
TCTCTCGGCGCAGTCCCGGCGCTGATGAAGCTCCAGGAGAAGGCAGAGAC
GATGCGGATGGAGGAGTTGAAAAAGGCGTCGAAAAAACTCAATAATCTCT
CGGACAAGGAACTCCAGACGGTTGAGAGGTTGACCAAGGGGATTGTGAAC
AAGCTGCTGCACGGACCTATGTCCCACTTAAGGGCAACGGAGGACTTGGA
GAAGAACCTAGTGGCGCTGAAGACATTGAAGGCCGTGTTTGAGCTCTAA

Synonyms

Publications