jgi.p|Nanoce1779_2|39005, mRNA_5847 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|39005
Unique NamemRNA_5847
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1218
Alignment locationscaffold_11:723606..724823 -

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Properties
Property NameValue
TranscriptId39091
TrackFilteredModels2
ProteinId39005
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:723606..724823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39005gene_5847Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39005mRNA_5847-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5847CDS_5847Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5847 ID=mRNA_5847|Name=jgi.p|Nanoce1779_2|39005|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
GGAAAAAAAGTAGAAGAGCCTCTAGGGAAGAGACTCGGGATGGGAGGCCG
TCTCGATGACCGCGGCGGCATCATCTTCATTAGCACAATACATAGCCGTT
TTGACACCCATTCACAACCACAACCACACAACCCTCCACAAACACTCAAC
TAAATCATACTATTGCAGTCCTGGGGCCACGCCCCCTTCTCCTTCCACTC
TCCATCTTCGTTGAGGATAGCCTTTCCCCTGCACTACCAGCACAAGCTCT
ACACGGACAGGATGGAGGGGTTCTCGGGATTGCGAGCCACGGTGCAAGCC
ACGATGGAGACGCATTGTCCCGAGGTAAGCCCCTCCCTTCTCTGTTTCCC
TCCCTTCCTTGCTCTCCCTGCCGTCCGGGCGATTGGGGCTGTCGGTATGA
ACAACGATTGTCTGGATTGTGAGGACGGCCATTTCTACTCCTTTCCCTGC
GTTTGCTCCCCATTTATATCACTCCCACCCACCTTCCTCCTCTCCTCACA
AACCCCCACTTCTTCCCCCGCCCAGGTCGCGCGTTGGGACAAGGACATGA
CCGCGGAAGGCCAGAACGGCGAAAGCGGGCAGGGGGTATTACCCACCTTG
CGCTCTGCCGAGGACGCCTTGGGACGGGCCCAGGCACGACAGACACGCGT
GGCTCGTTTGATAGACTTGCAGAGTCGGTACCGACATGACACGTCCGTAT
TGAAGGATCGGGTGAAAGCGCTGTTCGAAGAGGCGTTGGAGGACGAGGAG
AGCCAGACAGACAGGAGGAGGGAGGAGATGCATGCTCGATCCAAGGCCGT
GTTTGATGGAGTCAAAGCTATGAAAGAGCGCGTACGACAAGCGCAGCTGG
CGTATCGAAAATTGGGGATCAGCACCACAGTCGCGCCTGCAGGAGGAGGA
AGAGGGGGGATAGGACCAGAAGCGGGGTCGGTGCAGGAGGAGAGATTAAG
TGAGTTGCAAAGGCAGATTAGGGGTGTGGGGGAACGGCTTGCAAGGGTGA
GGTATGTGGCGGAGGAGGAGGAAGAGGCGAGGAGGCTGAGGGGGGAAGGG
GGGGAAGAGGAGGAGGAGGGGGAAGAGGAGGAGGAGGGGGGAGAGGAGGA
GGCGGATGGAAGCCCCTATCGATCGCCGATCAGTGGGGCGTATGGGACAG
AATGAGATGGAGGAGGTAATGCAGGAGAAGGCTGAAAGATCAAAGAATGA
AGAAATTATACTCAACAA
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protein sequence of jgi.p|Nanoce1779_2|39005

>mRNA_5847-protein ID=mRNA_5847-protein|Name=jgi.p|Nanoce1779_2|39005|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MEGFSGLRATVQATMETHCPEVSPSLLCFPPFLALPAVRAIGAVGMNNDC
LDCEDGHFYSFPCVCSPFISLPPTFLLSSQTPTSSPAQVARWDKDMTAEG
QNGESGQGVLPTLRSAEDALGRAQARQTRVARLIDLQSRYRHDTSVLKDR
VKALFEEALEDEESQTDRRREEMHARSKAVFDGVKAMKERVRQAQLAYRK
LGISTTVAPAGGGRGGIGPEAGSVQEERLSELQRQIRGVGERLARVRYVA
EEEEEARRLRGEGGEEEEEGEEEEEGGEEEADGSPYRSPISGAYGTE*
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mRNA from alignment at scaffold_11:723606..724823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5847 ID=mRNA_5847|Name=jgi.p|Nanoce1779_2|39005|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at scaffold_11:723606..724823- (Nannochloropsis oceanica)
GGAAAAAAAGTAGAAGAGCCTCTAGGGAAGAGACTCGGGATGGGAGGCCG
TCTCGATGACCGCGGCGGCATCATCTTCATTAGCACAATACATAGCCGTT
TTGACACCCATTCACAACCACAACCACACAACCCTCCACAAACACTCAAC
TAAATCATACTATTGCAGTCCTGGGGCCACGCCCCCTTCTCCTTCCACTC
TCCATCTTCGTTGAGGATAGCCTTTCCCCTGCACTACCAGCACAAGCTCT
ACACGGACAGGATGGAGGGGTTCTCGGGATTGCGAGCCACGGTGCAAGCC
ACGATGGAGACGCATTGTCCCGAGGTAAGCCCCTCCCTTCTCTGTTTCCC
TCCCTTCCTTGCTCTCCCTGCCGTCCGGGCGATTGGGGCTGTCGGTATGA
ACAACGATTGTCTGGATTGTGAGGACGGCCATTTCTACTCCTTTCCCTGC
GTTTGCTCCCCATTTATATCACTCCCACCCACCTTCCTCCTCTCCTCACA
AACCCCCACTTCTTCCCCCGCCCAGGTCGCGCGTTGGGACAAGGACATGA
CCGCGGAAGGCCAGAACGGCGAAAGCGGGCAGGGGGTATTACCCACCTTG
CGCTCTGCCGAGGACGCCTTGGGACGGGCCCAGGCACGACAGACACGCGT
GGCTCGTTTGATAGACTTGCAGAGTCGGTACCGACATGACACGTCCGTAT
TGAAGGATCGGGTGAAAGCGCTGTTCGAAGAGGCGTTGGAGGACGAGGAG
AGCCAGACAGACAGGAGGAGGGAGGAGATGCATGCTCGATCCAAGGCCGT
GTTTGATGGAGTCAAAGCTATGAAAGAGCGCGTACGACAAGCGCAGCTGG
CGTATCGAAAATTGGGGATCAGCACCACAGTCGCGCCTGCAGGAGGAGGA
AGAGGGGGGATAGGACCAGAAGCGGGGTCGGTGCAGGAGGAGAGATTAAG
TGAGTTGCAAAGGCAGATTAGGGGTGTGGGGGAACGGCTTGCAAGGGTGA
GGTATGTGGCGGAGGAGGAGGAAGAGGCGAGGAGGCTGAGGGGGGAAGGG
GGGGAAGAGGAGGAGGAGGGGGAAGAGGAGGAGGAGGGGGGAGAGGAGGA
GGCGGATGGAAGCCCCTATCGATCGCCGATCAGTGGGGCGTATGGGACAG
AATGAGATGGAGGAGGTAATGCAGGAGAAGGCTGAAAGATCAAAGAATGA
AGAAATTATACTCAACAA
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Coding sequence (CDS) from alignment at scaffold_11:723606..724823-

>mRNA_5847 ID=mRNA_5847|Name=jgi.p|Nanoce1779_2|39005|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_11:723606..724823- (Nannochloropsis oceanica)
ATGGAGGGGTTCTCGGGATTGCGAGCCACGGTGCAAGCCACGATGGAGAC
GCATTGTCCCGAGGTAAGCCCCTCCCTTCTCTGTTTCCCTCCCTTCCTTG
CTCTCCCTGCCGTCCGGGCGATTGGGGCTGTCGGTATGAACAACGATTGT
CTGGATTGTGAGGACGGCCATTTCTACTCCTTTCCCTGCGTTTGCTCCCC
ATTTATATCACTCCCACCCACCTTCCTCCTCTCCTCACAAACCCCCACTT
CTTCCCCCGCCCAGGTCGCGCGTTGGGACAAGGACATGACCGCGGAAGGC
CAGAACGGCGAAAGCGGGCAGGGGGTATTACCCACCTTGCGCTCTGCCGA
GGACGCCTTGGGACGGGCCCAGGCACGACAGACACGCGTGGCTCGTTTGA
TAGACTTGCAGAGTCGGTACCGACATGACACGTCCGTATTGAAGGATCGG
GTGAAAGCGCTGTTCGAAGAGGCGTTGGAGGACGAGGAGAGCCAGACAGA
CAGGAGGAGGGAGGAGATGCATGCTCGATCCAAGGCCGTGTTTGATGGAG
TCAAAGCTATGAAAGAGCGCGTACGACAAGCGCAGCTGGCGTATCGAAAA
TTGGGGATCAGCACCACAGTCGCGCCTGCAGGAGGAGGAAGAGGGGGGAT
AGGACCAGAAGCGGGGTCGGTGCAGGAGGAGAGATTAAGTGAGTTGCAAA
GGCAGATTAGGGGTGTGGGGGAACGGCTTGCAAGGGTGAGGTATGTGGCG
GAGGAGGAGGAAGAGGCGAGGAGGCTGAGGGGGGAAGGGGGGGAAGAGGA
GGAGGAGGGGGAAGAGGAGGAGGAGGGGGGAGAGGAGGAGGCGGATGGAA
GCCCCTATCGATCGCCGATCAGTGGGGCGTATGGGACAGAATGA
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Synonyms
Publications