jgi.p|Nanoce1779_2|589910, mRNA_5665 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589910
Unique Name	mRNA_5665
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1914
Alignment location	scaffold_11:259908..262801 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589996
Track	FilteredModels2
ProteinId	589910

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:259908..262801 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589910	gene_5665	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589910	mRNA_5665-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5665	CDS_5665	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:259908..262801+
coding sequence from alignment at scaffold_11:259908..262801+

mRNA sequence

>mRNA_5665 ID=mRNA_5665|Name=jgi.p|Nanoce1779_2|589910|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
CTCCTGCTGTCTTGTGACAATAAAGGAATGACGAAGGGATCCACTGGCAC
AGACCCACCCCTGTGTTTGTGTACGCATTGAGTTTCAGTATCCGGGCGTG
AGAGTTAGTGCGGCTGAAGAAATGGGGTGGGGAGGTCGGACGGGGTAGGT
TCAATAAATAAAACAAAAGTATGCAAACCCCGAAGCCGATTGAACTAGGC
AAGTAGGTGATCACTCACACGATGGTTTTGTCCTGAAAGGTATTGTCCAT
ATGCTGCCGCCTCAAAACGCGTGGTTTTGGGTTCCACCGGCGACAGCGAC
GACCGACGACTCCCTCTATCATCACGCGAGTGCAGTACTTCTTCTCGCTC
TTCCTTTCCTGCACATTTGCTAGGACACCAAGGCATCAACCCCGACAATC
CACGAAGCGTACCGCAGCCACTTTACTCCCCAGCGTCGTGGCGGCTCACA
ACTCTGGCACGGACAGCGTCGCGGGTATCGCAAATGATGGCGGGAAAGGC
ACATGTATATCCTTTCTTCCTTTTGTTCTGTGTGTGGTTGACCTTGAAGC
CAGCCTGCTCTCGCATTCTTAATCATTCCTCCGCATCGACACCCCGCACG
CAAAGACAGAGACTTCCTGATCTCTGACCTAGCGGCAACAACAGAGCGTC
GCAGCTAGCCAACCATGAAGCTCTCGCCCTCCTCCCTCGTCCTCTCCCTC
CTCCCCCTGGCCCAGGCCTTCCTCCCCCCCACCCTCCCCTCGACCTCTAC
GCTGCGGACGACTTGGGCCCCCGCGCCGTTGTCCATGTCCTCCCTGCTTT
TGGATGAAAATGCCGTGGCCGACCGGATCAAGGACGGTCTCCTCATACGT
CACATGCCCGAGGACGTGTACCGCGTGCTCAAATCCTGGGACCGGATGGT
GGAAAATGTGCCCTTCGAGGACAAGGAGACGCAGCGATTCGCCACCTCTT
ATATCGACGGCCTCGAGGCCAAGCCCTGGCACGATGTCTCCAAGTTCCCG
TGGCTGCAGAAACTGGAGGAGAACGCCGCAGTAGTCCAGCAGGAGCTGAA
AGAGGCCCTTCAGATGGGCGAGATGTTAGAAAAAACGGGCAATAACGTCT
GGATCGGTGCACTGACGAGTGAAGGGGCTGCCTATGGCCCCGACTGGAAG
ACACTTGTGCTGCAGGACCGTGCCTGGGACGACACCAACTGCCGCATTTT
CCCAAAGACTGTACAACTGCTGCGTGACATTGGAGCGCCCACCGTGGAGG
TTTTCTTCGCCAAGCAAAAGGGAAAGACGGGCATCCAACCGCACTCGGAT
GGGTGTAATTTTGTCTTGACGGCGCATTTGGGTTTGGACGTGCCCGAGGG
AGAATGCTGGATCAAGGTAGGGGGTGAGAAAAAGGAGTGGAAAAACGGCA
AGGCCCTGGCATTTGACACGCACTATTTCCACGAGACGGGGAACGAGAGC
GAGAAAGATCGGTACGTTCTTCTTATGCGGTTCTGGCACCCGGGTGTCAG
CCCCAAGGAGAGGGAGGCGTTGCAGTATGTGTTTGATGCTTTGGATGGCC
CGCAGGCACAGACGGACATGGACTTCGAGTACTTGAGTGGCTTGGCGGAT
GCCCAGTTGGCGAGTCGAAGGGTGGAGGAGCTGGAGGAGGATGAGTAGGC
GGGTCGAGGGGGAGGGAGGGGAAGGGGGGGGAGGAGGGGAGTGGGAAAGA
GGAAGTGCATTATGTGAATGAGGTGTGAGTGCTACTATGGCTTTGCGATT
GATTGATTTTTGTGATGATTCGGTGAAGAGAAGGCTGCTGTGCGAGAGGG
AAGGAGGAAAGGATCGGAGAGAGGGGGGATTCGGAGGCAGGACCAGCTAC
ATGGATGAAACCTACAGAATGAAAAGGGGAATGAAAAGAAGAAGAGAACG
TGATAACACCCTTA

protein sequence of jgi.p|Nanoce1779_2|589910

>mRNA_5665-protein ID=mRNA_5665-protein|Name=jgi.p|Nanoce1779_2|589910|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MKLSPSSLVLSLLPLAQAFLPPTLPSTSTLRTTWAPAPLSMSSLLLDENA
VADRIKDGLLIRHMPEDVYRVLKSWDRMVENVPFEDKETQRFATSYIDGL
EAKPWHDVSKFPWLQKLEENAAVVQQELKEALQMGEMLEKTGNNVWIGAL
TSEGAAYGPDWKTLVLQDRAWDDTNCRIFPKTVQLLRDIGAPTVEVFFAK
QKGKTGIQPHSDGCNFVLTAHLGLDVPEGECWIKVGGEKKEWKNGKALAF
DTHYFHETGNESEKDRYVLLMRFWHPGVSPKEREALQYVFDALDGPQAQT
DMDFEYLSGLADAQLASRRVEELEEDE*

mRNA from alignment at scaffold_11:259908..262801+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5665 ID=mRNA_5665|Name=jgi.p|Nanoce1779_2|589910|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp|location=Sequence derived from alignment at scaffold_11:259908..262801+ (Nannochloropsis oceanica)
CTCCTGCTGTCTTGTGACAATAAAGGAATGACGAAGGGATCCACTGGCAC
AGACCCACCCCTGTGTTTGTGTACGCATTGAGTTTCAGTATCCGGGCGTG
AGAGTTAGTGCGGCTGAAGAAATGGGGTGGGGAGGTCGGACGGGGTAGGT
TCAATAAATAAAACAAAAGTATGCAAACCCCGAAGCCGATTGAACTAGGC
AAGTAGGTGATCACTCACACGATGGTTTTGTCCTGAAAGGTATTGTCCAT
ATGCTGCCGCCTCAAAACGCGTGGTTTTGGGTTCCACCGGCGACAGCGAC
GACCGACGACTCCCTCTATCATCACGCGAGTGCAGTACTTCTTCTCGCTC
TTCCTTTCCTGCACATTTGCTAGGACACCAAGGCATCAACCCCGACAATC
CACGAAGCGTACCGCAGCCACTTTACTCCCCAGCGTCGTGGCGGCTCACA
ACTCTGGCACGGACAGCGTCGCGGGTATCGCAAATGATGGCGGGAAAGGC
ACATGTATATCCTTTCTTCCTTTTGTTCTGTGTGTGGTTGACCTTGAAGC
CAGCCTGCTCTCGCATTCTTAATCATTCCTCCGCATCGACACCCCGCACG
CAAAGACAGAGACTTCCTGATCTCTGACCTAGCGGCAACAACAGAGCGTC
GCAGCTAGCCAACCATGAAGCTCTCGCCCTCCTCCCTCGTCCTCTCCCTC
CTCCCCCTGGCCCAGGCCTTCCTCCCCCCCACCCTCCCCTCGACCTCTAC
GCTGCGGACGACTTGGGCCCCCGCGCCGTTGTCCATGTCCTCCCTGCTTT
TGGATGAAAATGCCGTGGCCGACCGGATCAAGGACGGTCTCCTCATACGT
CACATGCCCGAGGTACGGAGGGAGGGGAAAAGAAGGGAGGAAAGAAAGAG
AGGAGGTCGCTGCTCCCGGAGCAAGGCGTGCATCTTTGTCATGACAGCGA
AGGGTAATTGCACCGGAATGAGGCATAAGAGAAAATGATATTTCTGCAAC
TGTTGCCGCTCTCTCGTACTCATAATATGTACGGATATCCACCTTTTCCT
GATTGTCTTACCCTTCTCCGCTTTCGAGATGTGTACGCATATCATGAGAG
CATGCTTTGCGTCGCATCTCCCCCCGACATATCTTTAATTATCTCATTAC
CCCCGTAGAATAAATGAAATTCTTCAGTCGTTGGTAAGCCATCTTGCTGT
CATGCAGCGCAGCGCGAGTGTAAAAAATCACCCCCACCTCGGTCCGTCTG
CTCCTTTTCGAATGTACAGCTACACATCAGAGAAACAGAAACTCTGCATC
TCTCCCACTATATACCTGATAAGCGCACGGCTTTATAACCATGCCGTGTG
GTCAACTGCTCGGTGGGGACATTTAAACTATGTATTTTCGTAATAAGTAG
TGATAAGTCTCATTAAAATCCTACCTATGTAATCAATCAAATAACTAATT
TACTAATTCGACCCATCAATTTGTTTTCTAATCCGCAATTCATCACCCGT
CGATTAACGTAAGCATACATTCATCTATCCCCTTCCCCACATATCGATGC
AGGACGTGTACCGCGTGCTCAAATCCTGGGACCGGATGGTGGAAAATGTG
CCCTTCGAGGACAAGGAGACGCAGCGATTCGCCACCTCTTATATCGACGG
CCTCGAGGCCAAGCCCTGGCACGATGTCTCCAAGTGAGTGATTATATGAC
CCGTGGCCGTCTTTTCCCCTCCCTCTTCTCTCCACTTTTCTGGCTTGCTT
GTCCTTTCCCTGCTCCTTTTAACACTCTTCCCTTCCGTTTCCTTTTCCTT
GCACACGCGCTTCTCTCTAGGTTCCCGTGGCTGCAGAAACTGGAGGAGAA
CGCCGCAGTAGTCCAGCAGGAGCTGAAAGAGGCCCTTCAGATGGGCGAGA
TGTTAGAAAAAACGGGCAATAACGTCTGGATCGGTGCACTGACGAGTGAA
GGGGCTGCCTATGGCCCCGACTGGAAGACACTTGTGCTGCAGGTAGGTCC
TCTCCCTCCTTCCCTTCTACCATCCCATCCTCTCTCTTTCACGTCCTGCA
TGCTCGAAAGCATGCCTGTTTCTCTGTTGACTGGACGGAGACGGAGAACA
GAGAGCACTCACCCTTGATCCCTCCTTCCTTCCCTCCCTCCTTAGGACCG
TGCCTGGGACGACACCAACTGCCGCATTTTCCCAAAGACTGTACAACTGC
TGCGTGACATTGGAGCGCCCACCGTGGAGGTTTTCTTCGCCAAGCAAAAG
GGAAAGACGGGCATCCAACCGCACTCGGATGGGTGTAATTTTGTCTTGAC
GGCGCATTTGGGTTTGGACGTGCCCGAGGGAGAATGCTGGATCAAGGTAG
GGGGTGAGAAAAAGGAGTGGAAAAACGGCAAGGCCCTGGCATTTGACACG
CACTATTTCCACGAGACGGGGAACGAGAGCGAGAAAGATCGGTACGTTCT
TCTTATGCGGTTCTGGCACCCGGGTGTCAGCCCCAAGGAGAGGGAGGCGT
TGCAGTATGTGTTTGATGCTTTGGATGGCCCGCAGGCACAGACGGACATG
GACTTCGAGTACTTGAGTGGCTTGGCGGATGCCCAGTTGGCGAGTCGAAG
GGTGGAGGAGCTGGAGGAGGATGAGTAGGCGGGTCGAGGGGGAGGGAGGG
GAAGGGGGGGGAGGAGGGGAGTGGGAAAGAGGAAGTGCATTATGTGAATG
AGGTGTGAGTGCTACTATGGCTTTGCGATTGATTGATTTTTGTGATGATT
CGGTGAAGAGAAGGCTGCTGTGCGAGAGGGAAGGAGGAAAGGATCGGAGA
GAGGGGGGATTCGGAGGCAGGACCAGCTACATGGATGAAACCTACAGAAT
GAAAAGGGGAATGAAAAGAAGAAGAGAACGTGATAACACCCTTA

Coding sequence (CDS) from alignment at scaffold_11:259908..262801+

>mRNA_5665 ID=mRNA_5665|Name=jgi.p|Nanoce1779_2|589910|organism=Nannochloropsis oceanica|type=CDS|length=3936bp|location=Sequence derived from alignment at scaffold_11:259908..262801+ (Nannochloropsis oceanica)
ATGAAGCTCTCGCCCTCCTCCCTCGTCCTCTCCCTCCTCCCCCTGGCCCA
GGCCTTCCTCCCCCCCACCCTCCCCTCGACCTCTACGCTGCGGACGACTT
GGGCCCCCGCGCCGTTGTCCATGTCCTCCCTGCTTTTGGATGAAAATGCC
GTGGCCGACCGGATCAAGGACGGTCTCCTCATACGTCACATGCCCGAGGA
CGTGTACCGCGTGCTCAAATCCTGGGACCGGATGGTGGAAAATGTGCCCT
TCGAGGACAAGGAGACGCAGCGATTCGCCACCTCTTATATCGACGGCCTC
GAGGCCAAGCCCTGGCACGATGTCTCCAAGTTCCCGTGGCTGCAGAAACT
GGAGGAGAACGCCGCAGTAGTCCAGCAGGAGCTGAAAGAGGCCCTTCAGA
TGGGCGAGATGTTAGAAAAAACGGGCAATAACGTCTGGATCGGTGCACTG
ACGAGTGAAGGGGCTGCCTATGGCCCCGACTGGAAGACACTTGTGCTGCA
GGACCGTGCCTGGGACGACACCAACTGCCGCATTTTCCCAAAGACTGTAC
AACTGCTGCGTGACATTGGAGCGCCCACCGTGGAGGTTTTCTTCGCCAAG
CAAAAGGGAAAGACGGGCATCCAACCGCACTCGGATGGGTGTAATTTTGT
CTTGACGGCGCATTTGGGTTTGGACGTGCCCGAGGGAGAATGCTGGATCA
AGGTAGGGGGTGAGAAAAAGGAGTGGAAAAACGGCAAGGCCCTGGCATTT
GACACGCACTATTTCCACGAGACGGGGAACGAGAGCGAGAAAGATCGGTA
CGTTCTTCTTATGCGGTTCTGGCACCCGGGTGTCAGCCCCAAGGAGAGGG
AGGCGTTGCAGTATGTGTTTGATGCTTTGGATGGCCCGCAGGCACAGACG
GACATGGACTTCGAGTACTTGAGTGGCTTGGCGGATGCCCAGTTGGCGAG
TCGAAGGGTGGAGGAGCTGGAGGAGGATGAGTAGATGAAGCTCTCGCCCT
CCTCCCTCGTCCTCTCCCTCCTCCCCCTGGCCCAGGCCTTCCTCCCCCCC
ACCCTCCCCTCGACCTCTACGCTGCGGACGACTTGGGCCCCCGCGCCGTT
GTCCATGTCCTCCCTGCTTTTGGATGAAAATGCCGTGGCCGACCGGATCA
AGGACGGTCTCCTCATACGTCACATGCCCGAGGACGTGTACCGCGTGCTC
AAATCCTGGGACCGGATGGTGGAAAATGTGCCCTTCGAGGACAAGGAGAC
GCAGCGATTCGCCACCTCTTATATCGACGGCCTCGAGGCCAAGCCCTGGC
ACGATGTCTCCAAGTTCCCGTGGCTGCAGAAACTGGAGGAGAACGCCGCA
GTAGTCCAGCAGGAGCTGAAAGAGGCCCTTCAGATGGGCGAGATGTTAGA
AAAAACGGGCAATAACGTCTGGATCGGTGCACTGACGAGTGAAGGGGCTG
CCTATGGCCCCGACTGGAAGACACTTGTGCTGCAGGACCGTGCCTGGGAC
GACACCAACTGCCGCATTTTCCCAAAGACTGTACAACTGCTGCGTGACAT
TGGAGCGCCCACCGTGGAGGTTTTCTTCGCCAAGCAAAAGGGAAAGACGG
GCATCCAACCGCACTCGGATGGGTGTAATTTTGTCTTGACGGCGCATTTG
GGTTTGGACGTGCCCGAGGGAGAATGCTGGATCAAGGTAGGGGGTGAGAA
AAAGGAGTGGAAAAACGGCAAGGCCCTGGCATTTGACACGCACTATTTCC
ACGAGACGGGGAACGAGAGCGAGAAAGATCGGTACGTTCTTCTTATGCGG
TTCTGGCACCCGGGTGTCAGCCCCAAGGAGAGGGAGGCGTTGCAGTATGT
GTTTGATGCTTTGGATGGCCCGCAGGCACAGACGGACATGGACTTCGAGT
ACTTGAGTGGCTTGGCGGATGCCCAGTTGGCGAGTCGAAGGGTGGAGGAG
CTGGAGGAGGATGAGTAGATGAAGCTCTCGCCCTCCTCCCTCGTCCTCTC
CCTCCTCCCCCTGGCCCAGGCCTTCCTCCCCCCCACCCTCCCCTCGACCT
CTACGCTGCGGACGACTTGGGCCCCCGCGCCGTTGTCCATGTCCTCCCTG
CTTTTGGATGAAAATGCCGTGGCCGACCGGATCAAGGACGGTCTCCTCAT
ACGTCACATGCCCGAGGACGTGTACCGCGTGCTCAAATCCTGGGACCGGA
TGGTGGAAAATGTGCCCTTCGAGGACAAGGAGACGCAGCGATTCGCCACC
TCTTATATCGACGGCCTCGAGGCCAAGCCCTGGCACGATGTCTCCAAGTT
CCCGTGGCTGCAGAAACTGGAGGAGAACGCCGCAGTAGTCCAGCAGGAGC
TGAAAGAGGCCCTTCAGATGGGCGAGATGTTAGAAAAAACGGGCAATAAC
GTCTGGATCGGTGCACTGACGAGTGAAGGGGCTGCCTATGGCCCCGACTG
GAAGACACTTGTGCTGCAGGACCGTGCCTGGGACGACACCAACTGCCGCA
TTTTCCCAAAGACTGTACAACTGCTGCGTGACATTGGAGCGCCCACCGTG
GAGGTTTTCTTCGCCAAGCAAAAGGGAAAGACGGGCATCCAACCGCACTC
GGATGGGTGTAATTTTGTCTTGACGGCGCATTTGGGTTTGGACGTGCCCG
AGGGAGAATGCTGGATCAAGGTAGGGGGTGAGAAAAAGGAGTGGAAAAAC
GGCAAGGCCCTGGCATTTGACACGCACTATTTCCACGAGACGGGGAACGA
GAGCGAGAAAGATCGGTACGTTCTTCTTATGCGGTTCTGGCACCCGGGTG
TCAGCCCCAAGGAGAGGGAGGCGTTGCAGTATGTGTTTGATGCTTTGGAT
GGCCCGCAGGCACAGACGGACATGGACTTCGAGTACTTGAGTGGCTTGGC
GGATGCCCAGTTGGCGAGTCGAAGGGTGGAGGAGCTGGAGGAGGATGAGT
AGATGAAGCTCTCGCCCTCCTCCCTCGTCCTCTCCCTCCTCCCCCTGGCC
CAGGCCTTCCTCCCCCCCACCCTCCCCTCGACCTCTACGCTGCGGACGAC
TTGGGCCCCCGCGCCGTTGTCCATGTCCTCCCTGCTTTTGGATGAAAATG
CCGTGGCCGACCGGATCAAGGACGGTCTCCTCATACGTCACATGCCCGAG
GACGTGTACCGCGTGCTCAAATCCTGGGACCGGATGGTGGAAAATGTGCC
CTTCGAGGACAAGGAGACGCAGCGATTCGCCACCTCTTATATCGACGGCC
TCGAGGCCAAGCCCTGGCACGATGTCTCCAAGTTCCCGTGGCTGCAGAAA
CTGGAGGAGAACGCCGCAGTAGTCCAGCAGGAGCTGAAAGAGGCCCTTCA
GATGGGCGAGATGTTAGAAAAAACGGGCAATAACGTCTGGATCGGTGCAC
TGACGAGTGAAGGGGCTGCCTATGGCCCCGACTGGAAGACACTTGTGCTG
CAGGACCGTGCCTGGGACGACACCAACTGCCGCATTTTCCCAAAGACTGT
ACAACTGCTGCGTGACATTGGAGCGCCCACCGTGGAGGTTTTCTTCGCCA
AGCAAAAGGGAAAGACGGGCATCCAACCGCACTCGGATGGGTGTAATTTT
GTCTTGACGGCGCATTTGGGTTTGGACGTGCCCGAGGGAGAATGCTGGAT
CAAGGTAGGGGGTGAGAAAAAGGAGTGGAAAAACGGCAAGGCCCTGGCAT
TTGACACGCACTATTTCCACGAGACGGGGAACGAGAGCGAGAAAGATCGG
TACGTTCTTCTTATGCGGTTCTGGCACCCGGGTGTCAGCCCCAAGGAGAG
GGAGGCGTTGCAGTATGTGTTTGATGCTTTGGATGGCCCGCAGGCACAGA
CGGACATGGACTTCGAGTACTTGAGTGGCTTGGCGGATGCCCAGTTGGCG
AGTCGAAGGGTGGAGGAGCTGGAGGAGGATGAGTAG

Synonyms

Publications