jgi.p|Nanoce1779_2|670943, mRNA_5658 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670943
Unique Name	mRNA_5658
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1390
Alignment location	scaffold_11:237501..238890 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671029
Track	FilteredModels2
ProteinId	670943

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:237501..238890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670943	gene_5658	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670943	mRNA_5658-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5658	CDS_5658	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:237501..238890+
coding sequence from alignment at scaffold_11:237501..238890+

mRNA sequence

>mRNA_5658 ID=mRNA_5658|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp
CACACACCAACACACACCAACACACACCAACACACACACCAGAACACACA
TGCACACTAACATATATATATTTGCACATATACACACTCAAATAGACACA
CCGCTGTGGCATCGCATTATGAATACCTCCAATCCACCCGACTCTTTCTT
GTTAGATTGTGTTCTCGGCTTCCCAACGAAAACCCCTGCGGAAATCGACA
GCTTCATGAACCTTTACGCCAGGGAAGGTTACCATAGCAGCAGAAGTTCT
GTCAACTACCAAGACGAGCAAGGTCGAAGTCCCTTGGGAGTCGTGGCCAC
AATGGCCGGGCGCCCAATGGTAGACTTCGTGAAGATGTTGGTGGGACCGC
TAACGAAGCTGCGCATAAAAGATGCCCGGTTACGGACCCCTTTGTTGCTT
GCCGCTGAGAATGACCGTACAGAGATTTTCATCTATCTACTGGAGAGACT
CTCACAATATGAGACGGGATGGCAGCTGACAGAGGAAAAGGATTGCTATC
AACGTGGGCCGCTGCATTACATGTGCCAACACCGAAATGTGGCAGGAGTG
CGGGCCCTCCTTGCCGTGGCAGGGGCACCACCCGTCGGCGCCAAGGTAAG
AGAGGATGGGGAGGAAGAGAAGAAGAAGAAGGAGAGGATCAAGGTCGTGG
TCAATGCCAGGACAAGCAGTGGGGAGACGCCCCTCTTCTGGTTGGCACAG
TCATCAACCTTTTCGTCGCAAGAGAAAGAAAGGATGGAGGGCGGGGGAAA
TAGACAGAAAGAGAGAAGTAGCCGCGACTGCTCCTCCATTGACGACAAAA
ACACGGCTGATGCTGTGGAGATCGCCGAGCTTCTCCTAGCGGCAGGTGCA
GACCCCCAGGTGGTCAACGCCATGGGCCAGAAGCCTATGGATGTACTGGA
TGAGGGGGAGGGGGATGATGGGAAGGAGGGAGGGGTGAAGAATCGGCTGC
AGGCATTGTTATCCCCTGAGAGAGTTTCAAGGGGGAGGGGAGAAACAGAG
AAGGAGGAGGAGGAAAAGGAGGAGCAGGAGGCTGAGAGGAAAGTCACAGA
GAAAAAAGGGTGTGAAAACAGTAGCATAGCGATCAATACGCCCTTTCCGA
AGACGGCTGCCGTAGCACCACCAGGAGGCATGCTGTCCTCCTTCCCCACC
CGAGGAGTGGGATTCGATGCTGGTAACAGCAGTCGCATCGGCATTGGTAG
TGGTAGCAGGAGTGGCAGCAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGA
TAAAGCTAAAGGCACCTGCGGCGAGAGCAAAAGATAAGTAAGAATGAGGT
TTCGCTAGCGGGAATGGAAGGATAGGGAGGACGCGGCAAGTGATAGAGAG
TGATTTGATGTAATAAACGAAAGTACAGGAGACAAGTGTC

protein sequence of jgi.p|Nanoce1779_2|670943

>mRNA_5658-protein ID=mRNA_5658-protein|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MHTNIYIFAHIHTQIDTPLWHRIMNTSNPPDSFLLDCVLGFPTKTPAEID
SFMNLYAREGYHSSRSSVNYQDEQGRSPLGVVATMAGRPMVDFVKMLVGP
LTKLRIKDARLRTPLLLAAENDRTEIFIYLLERLSQYETGWQLTEEKDCY
QRGPLHYMCQHRNVAGVRALLAVAGAPPVGAKVREDGEEEKKKKERIKVV
VNARTSSGETPLFWLAQSSTFSSQEKERMEGGGNRQKERSSRDCSSIDDK
NTADAVEIAELLLAAGADPQVVNAMGQKPMDVLDEGEGDDGKEGGVKNRL
QALLSPERVSRGRGETEKEEEEKEEQEAERKVTEKKGCENSSIAINTPFP
KTAAVAPPGGMLSSFPTRGVGFDAGNSSRIGIGSGSRSGSSGGSAPKRLK
IKLKAPAARAKDK*

mRNA from alignment at scaffold_11:237501..238890+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5658 ID=mRNA_5658|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp|location=Sequence derived from alignment at scaffold_11:237501..238890+ (Nannochloropsis oceanica)
CACACACCAACACACACCAACACACACCAACACACACACCAGAACACACA
TGCACACTAACATATATATATTTGCACATATACACACTCAAATAGACACA
CCGCTGTGGCATCGCATTATGAATACCTCCAATCCACCCGACTCTTTCTT
GTTAGATTGTGTTCTCGGCTTCCCAACGAAAACCCCTGCGGAAATCGACA
GCTTCATGAACCTTTACGCCAGGGAAGGTTACCATAGCAGCAGAAGTTCT
GTCAACTACCAAGACGAGCAAGGTCGAAGTCCCTTGGGAGTCGTGGCCAC
AATGGCCGGGCGCCCAATGGTAGACTTCGTGAAGATGTTGGTGGGACCGC
TAACGAAGCTGCGCATAAAAGATGCCCGGTTACGGACCCCTTTGTTGCTT
GCCGCTGAGAATGACCGTACAGAGATTTTCATCTATCTACTGGAGAGACT
CTCACAATATGAGACGGGATGGCAGCTGACAGAGGAAAAGGATTGCTATC
AACGTGGGCCGCTGCATTACATGTGCCAACACCGAAATGTGGCAGGAGTG
CGGGCCCTCCTTGCCGTGGCAGGGGCACCACCCGTCGGCGCCAAGGTAAG
AGAGGATGGGGAGGAAGAGAAGAAGAAGAAGGAGAGGATCAAGGTCGTGG
TCAATGCCAGGACAAGCAGTGGGGAGACGCCCCTCTTCTGGTTGGCACAG
TCATCAACCTTTTCGTCGCAAGAGAAAGAAAGGATGGAGGGCGGGGGAAA
TAGACAGAAAGAGAGAAGTAGCCGCGACTGCTCCTCCATTGACGACAAAA
ACACGGCTGATGCTGTGGAGATCGCCGAGCTTCTCCTAGCGGCAGGTGCA
GACCCCCAGGTGGTCAACGCCATGGGCCAGAAGCCTATGGATGTACTGGA
TGAGGGGGAGGGGGATGATGGGAAGGAGGGAGGGGTGAAGAATCGGCTGC
AGGCATTGTTATCCCCTGAGAGAGTTTCAAGGGGGAGGGGAGAAACAGAG
AAGGAGGAGGAGGAAAAGGAGGAGCAGGAGGCTGAGAGGAAAGTCACAGA
GAAAAAAGGGTGTGAAAACAGTAGCATAGCGATCAATACGCCCTTTCCGA
AGACGGCTGCCGTAGCACCACCAGGAGGCATGCTGTCCTCCTTCCCCACC
CGAGGAGTGGGATTCGATGCTGGTAACAGCAGTCGCATCGGCATTGGTAG
TGGTAGCAGGAGTGGCAGCAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGA
TAAAGCTAAAGGCACCTGCGGCGAGAGCAAAAGATAAGTAAGAATGAGGT
TTCGCTAGCGGGAATGGAAGGATAGGGAGGACGCGGCAAGTGATAGAGAG
TGATTTGATGTAATAAACGAAAGTACAGGAGACAAGTGTC

Coding sequence (CDS) from alignment at scaffold_11:237501..238890+

>mRNA_5658 ID=mRNA_5658|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_11:237501..238890+ (Nannochloropsis oceanica)
ATGCACACTAACATATATATATTTGCACATATACACACTCAAATAGACAC
ACCGCTGTGGCATCGCATTATGAATACCTCCAATCCACCCGACTCTTTCT
TGTTAGATTGTGTTCTCGGCTTCCCAACGAAAACCCCTGCGGAAATCGAC
AGCTTCATGAACCTTTACGCCAGGGAAGGTTACCATAGCAGCAGAAGTTC
TGTCAACTACCAAGACGAGCAAGGTCGAAGTCCCTTGGGAGTCGTGGCCA
CAATGGCCGGGCGCCCAATGGTAGACTTCGTGAAGATGTTGGTGGGACCG
CTAACGAAGCTGCGCATAAAAGATGCCCGGTTACGGACCCCTTTGTTGCT
TGCCGCTGAGAATGACCGTACAGAGATTTTCATCTATCTACTGGAGAGAC
TCTCACAATATGAGACGGGATGGCAGCTGACAGAGGAAAAGGATTGCTAT
CAACGTGGGCCGCTGCATTACATGTGCCAACACCGAAATGTGGCAGGAGT
GCGGGCCCTCCTTGCCGTGGCAGGGGCACCACCCGTCGGCGCCAAGGTAA
GAGAGGATGGGGAGGAAGAGAAGAAGAAGAAGGAGAGGATCAAGGTCGTG
GTCAATGCCAGGACAAGCAGTGGGGAGACGCCCCTCTTCTGGTTGGCACA
GTCATCAACCTTTTCGTCGCAAGAGAAAGAAAGGATGGAGGGCGGGGGAA
ATAGACAGAAAGAGAGAAGTAGCCGCGACTGCTCCTCCATTGACGACAAA
AACACGGCTGATGCTGTGGAGATCGCCGAGCTTCTCCTAGCGGCAGGTGC
AGACCCCCAGGTGGTCAACGCCATGGGCCAGAAGCCTATGGATGTACTGG
ATGAGGGGGAGGGGGATGATGGGAAGGAGGGAGGGGTGAAGAATCGGCTG
CAGGCATTGTTATCCCCTGAGAGAGTTTCAAGGGGGAGGGGAGAAACAGA
GAAGGAGGAGGAGGAAAAGGAGGAGCAGGAGGCTGAGAGGAAAGTCACAG
AGAAAAAAGGGTGTGAAAACAGTAGCATAGCGATCAATACGCCCTTTCCG
AAGACGGCTGCCGTAGCACCACCAGGAGGCATGCTGTCCTCCTTCCCCAC
CCGAGGAGTGGGATTCGATGCTGGTAACAGCAGTCGCATCGGCATTGGTA
GTGGTAGCAGGAGTGGCAGCAGTGGAGGTAGTGCCCCCAAGAGGCTGAAG
ATAAAGCTAAAGGCACCTGCGGCGAGAGCAAAAGATAAGTAA

Synonyms

Publications