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Properties
| Property Name | Value |
|---|
| TranscriptId | 556110 |
| Track | FilteredModels2 |
| ProteinId | 556024 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:486256..489470 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5109 ID=mRNA_5109|Name=jgi.p|Nanoce1779_2|556024|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp
GTGTGTTTATATGTGTATTTATATATGTAAATGTATATGTATATGCATAA
ATGCCTTTCTTCTTCGCTCCCCTAGTTAAATGACAACACCCCTACACGTA
CATACTGAGGTAGTGTATTGCTACCAAGCTCAGGCGTACCTCACCCTTCT
TTCATCTCAACGTCGTGTCTTCAAGCTGTCTCTGACCAACTCCGTCGTTC
CTGGCGGAAACATTCTCTCATATCGCCTATGCCATGCACTACACCTCTCA
TCCGCCTCCAACGCCTCCCTCATCGGCGCACAATCCTGCTGTGTATTATT
CGACTGCGTTATATGGTTCGCATGTAACTCACTCCTGGGATGTGCAACCG
GGAAAACTCCAGGTGGTGGTGACTGTAGCTCCAACACCTCCCTCGCCACA
CCTCTTGCGTCGACCACACCTCCTTGCACCTTCCACATCCTTGCCATTGC
CTCCACCACTTCCGTCATACCCTCCAGTGTATGGAGCGCAGAATGATGCA
CAAATAATGCATTTCCAGGCCCCGCAGCTTCGGCAAGCTCATTGATCCTC
CGTTCGTTCTGCGCCATGGTATGGCAAGAGTGCAAGGCCTGAGCAAAGTC
CGTCAAGAATATAGGCCGAAACATCTTGGCCATTGAGCAAACCATGTCAT
ACGGGTCCCGGTACGTCACCAAGAAGAAATTGGCACTTTCGTGATAGTTT
TGATTTGCTATATGAGATTTGTACACCATGCTGACCAAGCCTCGGGCTTT
GGGGACGACATCCCGAATTAAGATGTCAGTGTTGGTACCCGTCACGTCCT
TCTCCCACCCCGACGCGGAATTAGGGTCCACCCGCTCCATCAAAACCCGG
GCCAGGTTGTAGGCTGTCGTTGAGACGGTACGCATGTTGGCCAAGCAGGC
GACGATGAGAGGAGCGGCCAAGCGTGGCAAGGGAGGATCGACGGTGTCAA
GCGAGGAGGATTGAGAGCTGGTGGAGGCATCGGCAGTCAAGGAAACCGCA
GCCGGCGCAGCAACATCTTGACCTGCCACTGCAGCCGTCGTCGTAGCAGG
ACTAGGCTTCTCATAACGCGCAATTATGACAAGCTGGGCGCCAAAGATTA
AACTCAATAAGACCAACACCATGCGGGATGCGGAGTAATTGACGGGCCAG
TTCCTGTAGCGACCCATTGTAATTGTTTTGGTGTTTGCTTGCGTGTGATA
TTCTGTACCCCCTTGCGCCTCGCCTGTCGCGGGATCGGGAACGATTGTGA
TAGATGGGCATGAGCAAAGTAAATTGGAAGGGGCCGAAACCATACTGCTT
TGATGGTGGACAACGCAAGCCTGCAACACGTAAACCGATGCAACGCCGGG
TAACGGACGTTGCTGCTCCGCCGCCGGCGGGGAGTCGTCCAGAAACACCC
CACAGCTCTCCGCCTCCTGGCTGTCTCTACACTTCGTTTATGCCGTTTTC
TCATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACA
GATATGACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCC
CCAATCCGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCC
AGGCGTGGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCC
CCCATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGTCGCTA
CGGCACCCAACTCGCCTACTCCCCCATGGTTCACGCTGCCTGCTACCTTC
GTGAAAAACGGAGCAAGCGAAACGATATTTTTTTCTGCAACACCACTCCT
GAAGACTATCCCCTCATCGTCCAGCTATGTGGAAATGATCCTGAAATTCT
CTTGGCTGCTGCCAAGGAAATTTGCCGCATCGACGGCGTGTGCGCGATCG
ACCTAAATCTCGGCTGCCCCCAAGGAATAGCTCGCAAGGGTAAATACGGC
GCGTTTTTACTGCACCAGACTGATTTGGTCGTGAAAATTGTTTCTACTCT
GGCTCAGGGGCTGGATAAACCCGTGACGTGTAAAATTCGTTTATTGCCTT
CTTTTAAGGATACGATGTCGTTGTGCCATGCCCTGGTAGCGGCAGGTTGT
TCCCTTTTGACGGTGCATGGGCGAACCAAGGATCAGAACAAACATTTGGT
GGGCATGTGCGATTGGGAGATGATTAGGCGGATAAAGGAAGAGATGGTGA
TTCCGGTGTTCGCGAACGGTGGGATTAGTGACTTGGATGATGTGCTGAGG
TGTATGGAGGCCACGGGAGTGGACGGGGTCATGAGCTCTGAAGCGCTTTT
GGAAAATCCGGGGCTGTTCTCGAGGAATATGAGCCTCCGCCGATCTAATC
AATTGGATCTCGCTGAGGAATACTTGCAAATAGTCGATCAACACCCCCCC
GAGAGGCTCAAATGCGTCCGAGCCCATGTCTTCAAAATGGCATTCACGGG
CGTGCAGCTCTACGAGGATTTAAGGGATAATTTGGTGGTGGCGGAGACAG
TGGAGGAAATAAAGGAAGTGGTCAGAGAGATAAGGAGGAGAGCCGTGGAG
GAAGGGAGGGAGGAAGGGGTGGGAGAACGATCGTGGTATTGGCGACATTG
GACAGAGGAGAAGGATGGGGGAGGAGAGAGTGGGGTGTTGGAAGTGGTGG
AGCACGACGGTGTGGGGGAGGAGGGGTTCGATGGCATGGGCTGTCTTTTC
GGAGGCGAGGAGGGAGATTGA back to topprotein sequence of jgi.p|Nanoce1779_2|556024 >mRNA_5109-protein ID=mRNA_5109-protein|Name=jgi.p|Nanoce1779_2|556024|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPLSSVLLAPSALKHTDMTAPDPASEHTAGGVPQSATSSPTFDLASHAAQ
AWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLR
EKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAID
LNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPS
FKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVI
PVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMSLRRSNQ
LDLAEEYLQIVDQHPPERLKCVRAHVFKMAFTGVQLYEDLRDNLVVAETV
EEIKEVVREIRRRAVEEGREEGVGERSWYWRHWTEEKDGGGESGVLEVVE
HDGVGEEGFDGMGCLFGGEEGD* back to topmRNA from alignment at scaffold_12:486256..489470- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5109 ID=mRNA_5109|Name=jgi.p|Nanoce1779_2|556024|organism=Nannochloropsis oceanica|type=mRNA|length=3215bp|location=Sequence derived from alignment at scaffold_12:486256..489470- (Nannochloropsis oceanica)
GTGTGTTTATATGTGTATTTATATATGTAAATGTATATGTATATGCATAA
ATGCCTTTCTTCTTCGCTCCCCTAGTTAAATGACAACACCCCTACACGTA
CATACTGAGGTAGTGTATTGCTACCAAGCTCAGGCGTACCTCACCCTTCT
TTCATCTCAACGTCGTGTCTTCAAGCTGTCTCTGACCAACTCCGTCGTTC
CTGGCGGAAACATTCTCTCATATCGCCTATGCCATGCACTACACCTCTCA
TCCGCCTCCAACGCCTCCCTCATCGGCGCACAATCCTGCTGTGTATTATT
CGACTGCGTTATATGGTTCGCATGTAACTCACTCCTGGGATGTGCAACCG
GGAAAACTCCAGGTGGTGGTGACTGTAGCTCCAACACCTCCCTCGCCACA
CCTCTTGCGTCGACCACACCTCCTTGCACCTTCCACATCCTTGCCATTGC
CTCCACCACTTCCGTCATACCCTCCAGTGTATGGAGCGCAGAATGATGCA
CAAATAATGCATTTCCAGGCCCCGCAGCTTCGGCAAGCTCATTGATCCTC
CGTTCGTTCTGCGCCATGGTATGGCAAGAGTGCAAGGCCTGAGCAAAGTC
CGTCAAGAATATAGGCCGAAACATCTTGGCCATTGAGCAAACCATGTCAT
ACGGGTCCCGGTACGTCACCAAGAAGAAATTGGCACTTTCGTGATAGTTT
TGATTTGCTATATGAGATTTGTACACCATGCTGACCAAGCCTCGGGCTTT
GGGGACGACATCCCGAATTAAGATGTCAGTGTTGGTACCCGTCACGTCCT
TCTCCCACCCCGACGCGGAATTAGGGTCCACCCGCTCCATCAAAACCCGG
GCCAGGTTGTAGGCTGTCGTTGAGACGGTACGCATGTTGGCCAAGCAGGC
GACGATGAGAGGAGCGGCCAAGCGTGGCAAGGGAGGATCGACGGTGTCAA
GCGAGGAGGATTGAGAGCTGGTGGAGGCATCGGCAGTCAAGGAAACCGCA
GCCGGCGCAGCAACATCTTGACCTGCCACTGCAGCCGTCGTCGTAGCAGG
ACTAGGCTTCTCATAACGCGCAATTATGACAAGCTGGGCGCCAAAGATTA
AACTCAATAAGACCAACACCATGCGGGATGCGGAGTAATTGACGGGCCAG
TTCCTGTAGCGACCCATTGTAATTGTTTTGGTGTTTGCTTGCGTGTGATA
TTCTGTACCCCCTTGCGCCTCGCCTGTCGCGGGATCGGGAACGATTGTGA
TAGATGGGCATGAGCAAAGTAAATTGGAAGGGGCCGAAACCATACTGCTT
TGATGGTGGACAACGCAAGCCTGCAACACGTAAACCGATGCAACGCCGGG
TAACGGACGTTGCTGCTCCGCCGCCGGCGGGGAGTCGTCCAGAAACACCC
CACAGCTCTCCGCCTCCTGGCTGTCTCTACACTTCGTTTATGCCGTTTTC
TCATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACA
GATATGACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCC
CCAATCCGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCC
AGGCGTGGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCC
CCCATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGGTACGT
GATGGAGAGAGGGGTCGACTTATAGGGGCGGAATAGCAGATGTGGAAGAA
AGGGATAGTGGTTGAGAGGCTATACTACGTGTACGTATGTATGTGACAGA
ATGATGTCTGTGAGTATGTACGATGTGTATGTATGTATATTTGTGTATTA
TATTGATATATATTGTACAAATATATGTATATTATATTGTGTATTGTACT
GTATGTATTGTGTATTATGTGTATTATGTATGTGTGTCTCGCCCTCATCC
TTACCACGCAGCCCCCAAGGGTACAATAGGCACCCTAAACTCAATCAGAG
TGCACTCTCAACATCCCTTGACTGCATCTCATCCTCTCCTTCCCTTCCCT
TCCCCCAAACAGTCGCTACGGCACCCAACTCGCCTACTCCCCCATGGTTC
ACGCTGCCTGCTACCTTCGTGAAAAACGGAGCAAGCGAAACGATATTTTT
TTCTGCAACACCACTCCTGAAGACTATCCCCTCATCGTCCAGCTATGTGG
AAATGATCCTGAAATTCTCTTGGCTGCTGCCAAGGAAATTTGCCGCATCG
ACGGCGTGTGCGCGATCGACCTAAATCTCGGCTGCCCCCAAGGAATAGCT
CGCAAGGGTAAATACGGCGCGTTTTTACTGCACCAGACTGATTTGGTCGT
GAAAATTGTTTCTACTCTGGCTCAGGGGCTGGATAAACCCGTGACGTGTA
AAATTCGTTTATTGCCTTCTTTTAAGGATACGATGTCGTTGTGCCATGCC
CTGGTAGCGGCAGGTTGTTCCCTTTTGACGGTGCATGGGCGAACCAAGGA
TCAGAACAAACATTTGGTGGGCATGTGCGATTGGGAGATGATTAGGCGGA
TAAAGGAAGAGATGGTGATTCCGGTGTTCGCGAACGGTGGGATTAGTGAC
TTGGATGATGTGCTGAGGTGTATGGAGGCCACGGGAGTGGACGGGGTCAT
GAGCTCTGAAGCGCTTTTGGAAAATCCGGGGCTGTTCTCGAGGAATATGA
GGTTAAGTAAGCAAGGAGAGAAAGTAAAGGAGGTGTATAGACCTGGGGGG
GGGGAGAAGAGGGAAGAAAAGAAGAGAGGGAAGGAAGGCAACGATCGCCG
CCGACAGCAACAGGAAGAGGAACGCAGCCTCCGCCGATCTAATCAATTGG
ATCTCGCTGAGGAATACTTGCAAATAGTCGATCAACACCCCCCCGAGAGG
CTCAAATGCGTCCGAGCCCATGTCTTCAAAATGGCATTCACGGGCGTGCA
GCTCTACGAGGATTTAAGGGATAATTTGGTGGTGGCGGAGACAGTGGAGG
AAATAAAGGAAGTGGTCAGAGAGATAAGGAGGAGAGCCGTGGAGGAAGGG
AGGGAGGAAGGGGTGGGAGAACGATCGTGGTATTGGCGACATTGGACAGA
GGAGAAGGATGGGGGAGGAGAGAGTGGGGTGTTGGAAGTGGTGGAGCACG
ACGGTGTGGGGGAGGAGGGGTTCGATGGCATGGGCTGTCTTTTCGGAGGC
GAGGAGGGAGATTGA back to topCoding sequence (CDS) from alignment at scaffold_12:486256..489470- >mRNA_5109 ID=mRNA_5109|Name=jgi.p|Nanoce1779_2|556024|organism=Nannochloropsis oceanica|type=CDS|length=3807bp|location=Sequence derived from alignment at scaffold_12:486256..489470- (Nannochloropsis oceanica)
CCTCCGCCGATCTAATCAATTGGATCTCGCTGAGGAATACTTGCAAATAG
TCGATCAACACCCCCCCGAGAGGCTCAAATGCGTCCGAGCCCATGTCTTC
AAAATGGCATTCACGGGCGTGCAGCTCTACGAGGATTTAAGGGATAATTT
GGTGGTGGCGGAGACAGTGGAGGAAATAAAGGAAGTGGTCAGAGAGATAA
GGAGGAGAGCCGTGGAGGAAGGGAGGGAGGAAGGGGTGGGAGAACGATCG
TGGTATTGGCGACATTGGACAGAGGAGAAGGATGGGGGAGGAGAGAGTGG
GGTGTTGGAAGTGGTGGAGCACGACGGTGTGGGGGAGGAGGGGTTCGATG
GCATGGGCTGTCTTTTCGGAGGCGAGGAGGGAGATTGATCGCTACGGCAC
CCAACTCGCCTACTCCCCCATGGTTCACGCTGCCTGCTACCTTCGTGAAA
AACGGAGCAAGCGAAACGATATTTTTTTCTGCAACACCACTCCTGAAGAC
TATCCCCTCATCGTCCAGCTATGTGGAAATGATCCTGAAATTCTCTTGGC
TGCTGCCAAGGAAATTTGCCGCATCGACGGCGTGTGCGCGATCGACCTAA
ATCTCGGCTGCCCCCAAGGAATAGCTCGCAAGGGTAAATACGGCGCGTTT
TTACTGCACCAGACTGATTTGGTCGTGAAAATTGTTTCTACTCTGGCTCA
GGGGCTGGATAAACCCGTGACGTGTAAAATTCGTTTATTGCCTTCTTTTA
AGGATACGATGTCGTTGTGCCATGCCCTGGTAGCGGCAGGTTGTTCCCTT
TTGACGGTGCATGGGCGAACCAAGGATCAGAACAAACATTTGGTGGGCAT
GTGCGATTGGGAGATGATTAGGCGGATAAAGGAAGAGATGGTGATTCCGG
TGTTCGCGAACGGTGGGATTAGTGACTTGGATGATGTGCTGAGGTGTATG
GAGGCCACGGGAGTGGACGGGGTCATGAGCTCTGAAGCGCTTTTGGAAAA
TCCGGGGCTGTTCTCGAGGAATATGAGATGCCTCTTTCCTCGGTCCTCCT
TGCCCCTTCCGCTCTCAAGCACACAGATATGACGGCACCTGATCCTGCCT
CGGAGCACACGGCAGGGGGTGTCCCCCAATCCGCCACATCATCACCAACC
TTTGATCTAGCATCGCATGCGGCCCAGGCGTGGGAATGGTACCGGAACAT
GGGGAGCCCGCAGTACGTGTGTGCCCCCATGGTGGATCAGTCAGAGCTGG
CTTTTCGATTGTTGTGCCGCCTCCGCCGATCTAATCAATTGGATCTCGCT
GAGGAATACTTGCAAATAGTCGATCAACACCCCCCCGAGAGGCTCAAATG
CGTCCGAGCCCATGTCTTCAAAATGGCATTCACGGGCGTGCAGCTCTACG
AGGATTTAAGGGATAATTTGGTGGTGGCGGAGACAGTGGAGGAAATAAAG
GAAGTGGTCAGAGAGATAAGGAGGAGAGCCGTGGAGGAAGGGAGGGAGGA
AGGGGTGGGAGAACGATCGTGGTATTGGCGACATTGGACAGAGGAGAAGG
ATGGGGGAGGAGAGAGTGGGGTGTTGGAAGTGGTGGAGCACGACGGTGTG
GGGGAGGAGGGGTTCGATGGCATGGGCTGTCTTTTCGGAGGCGAGGAGGG
AGATTGATCGCTACGGCACCCAACTCGCCTACTCCCCCATGGTTCACGCT
GCCTGCTACCTTCGTGAAAAACGGAGCAAGCGAAACGATATTTTTTTCTG
CAACACCACTCCTGAAGACTATCCCCTCATCGTCCAGCTATGTGGAAATG
ATCCTGAAATTCTCTTGGCTGCTGCCAAGGAAATTTGCCGCATCGACGGC
GTGTGCGCGATCGACCTAAATCTCGGCTGCCCCCAAGGAATAGCTCGCAA
GGGTAAATACGGCGCGTTTTTACTGCACCAGACTGATTTGGTCGTGAAAA
TTGTTTCTACTCTGGCTCAGGGGCTGGATAAACCCGTGACGTGTAAAATT
CGTTTATTGCCTTCTTTTAAGGATACGATGTCGTTGTGCCATGCCCTGGT
AGCGGCAGGTTGTTCCCTTTTGACGGTGCATGGGCGAACCAAGGATCAGA
ACAAACATTTGGTGGGCATGTGCGATTGGGAGATGATTAGGCGGATAAAG
GAAGAGATGGTGATTCCGGTGTTCGCGAACGGTGGGATTAGTGACTTGGA
TGATGTGCTGAGGTGTATGGAGGCCACGGGAGTGGACGGGGTCATGAGCT
CTGAAGCGCTTTTGGAAAATCCGGGGCTGTTCTCGAGGAATATGAGATGC
CTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACAGATATG
ACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCCCCAATC
CGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCCAGGCGT
GGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCCCCCATG
GTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGCCTCCGCCGATC
TAATCAATTGGATCTCGCTGAGGAATACTTGCAAATAGTCGATCAACACC
CCCCCGAGAGGCTCAAATGCGTCCGAGCCCATGTCTTCAAAATGGCATTC
ACGGGCGTGCAGCTCTACGAGGATTTAAGGGATAATTTGGTGGTGGCGGA
GACAGTGGAGGAAATAAAGGAAGTGGTCAGAGAGATAAGGAGGAGAGCCG
TGGAGGAAGGGAGGGAGGAAGGGGTGGGAGAACGATCGTGGTATTGGCGA
CATTGGACAGAGGAGAAGGATGGGGGAGGAGAGAGTGGGGTGTTGGAAGT
GGTGGAGCACGACGGTGTGGGGGAGGAGGGGTTCGATGGCATGGGCTGTC
TTTTCGGAGGCGAGGAGGGAGATTGATCGCTACGGCACCCAACTCGCCTA
CTCCCCCATGGTTCACGCTGCCTGCTACCTTCGTGAAAAACGGAGCAAGC
GAAACGATATTTTTTTCTGCAACACCACTCCTGAAGACTATCCCCTCATC
GTCCAGCTATGTGGAAATGATCCTGAAATTCTCTTGGCTGCTGCCAAGGA
AATTTGCCGCATCGACGGCGTGTGCGCGATCGACCTAAATCTCGGCTGCC
CCCAAGGAATAGCTCGCAAGGGTAAATACGGCGCGTTTTTACTGCACCAG
ACTGATTTGGTCGTGAAAATTGTTTCTACTCTGGCTCAGGGGCTGGATAA
ACCCGTGACGTGTAAAATTCGTTTATTGCCTTCTTTTAAGGATACGATGT
CGTTGTGCCATGCCCTGGTAGCGGCAGGTTGTTCCCTTTTGACGGTGCAT
GGGCGAACCAAGGATCAGAACAAACATTTGGTGGGCATGTGCGATTGGGA
GATGATTAGGCGGATAAAGGAAGAGATGGTGATTCCGGTGTTCGCGAACG
GTGGGATTAGTGACTTGGATGATGTGCTGAGGTGTATGGAGGCCACGGGA
GTGGACGGGGTCATGAGCTCTGAAGCGCTTTTGGAAAATCCGGGGCTGTT
CTCGAGGAATATGAGATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGC
TCTCAAGCACACAGATATGACGGCACCTGATCCTGCCTCGGAGCACACGG
CAGGGGGTGTCCCCCAATCCGCCACATCATCACCAACCTTTGATCTAGCA
TCGCATGCGGCCCAGGCGTGGGAATGGTACCGGAACATGGGGAGCCCGCA
GTACGTGTGTGCCCCCATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGT
TGTGCCG back to top
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