jgi.p|Nanoce1779_2|591006, mRNA_4980 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591006
Unique Name	mRNA_4980
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1680
Alignment location	scaffold_12:173666..175967 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591092
Track	FilteredModels2
ProteinId	591006

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:173666..175967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591006	gene_4980	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591006	mRNA_4980-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4980	CDS_4980	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:173666..175967+
coding sequence from alignment at scaffold_12:173666..175967+

mRNA sequence

>mRNA_4980 ID=mRNA_4980|Name=jgi.p|Nanoce1779_2|591006|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp
CAGGTCGCGCCCTTGCAACAAGACTTTCAAGCGAACCGAGAACACACTTC
AGCTAGCGGCGCGCTCCGTGCCCCACGGCCCCGTCTTCCCCCAGCGAGCA
CCACGGGAGCCAAGACATCTCAAGTATGGCTTATGTATTGAATCCTCGTT
TCTTGATGGGATTATCTTTGACCGTCATATGCTTGGCCCTGGCGTTGGGT
GCCGTCCTGACAGGGGAGTTTGCCAATGGGATGGCCGTGGTCAGCGGCAG
TGAAGGCTATGCATCCGTGAAGTTGGGTTTGTGGTACGGTAAATCCAAAA
GGGCAGGTCGGCGCGAAGTATTTCGATACCAGTGGTGCGATGTCGATAGC
CCTTCCTTCCACGGGCCCCACTGCACACAACTGCAGGTTGCTCGAACTGC
GGCATGCACGGGTGTCTGTCTTCTGGTCGCCCTGGTGGTCCTCCTTGTTC
TCCTCACCACCTGCACCATAAAGATTCCTATGGAGGGGCAGTTGACGCGG
ATGGCTGCGGGATTGTCCGCGACGGCCTCATTCTGTTTTGTGGTATGTTT
GGCCGTGTGGACGATTCTGGTCCTGTCGTTAAGCGAAAAGGGAGATGACA
GCAAGGCCCACCTAGCGATCGGTATGTCCTGGCTGGCGGAAGGTGGTGCG
TTTATCATCGCCTTCCTCCTCACCATCAACATGCTTCAAACGGCCAAAAG
AATAGAGCAGGAGGCGTCGGCCTCCATCCTGAATGCCGAAGAGAAGACTG
GCTGGGTGGAGGCAGGCAAGGCAAGTGCTGCTGGCGGCGGTGACAACCCC
AGGAAAATAGAAAAGCCACGGGCTGGCAGGCGCTCGCATGGCGGAGGAGA
CCTTGAGGCATAAGCATTCATATGTAAATGATTAACAAGTTATCTTTAAA
GGAAAAAATCTCATCAAAATGAGCTCACACCATAGTAGATTGGAAATTAT
TATCAATCAATTTTCCTTTCTTTTTCACTCAGCTTCAAACAAACAGTTAT
TATACATACATACCGCGCCATACTCCTCCTGCTCCTACTGTTGCTGCTGT
TGTTTGTCCCAATCTCTCTCAGCACTTCTTCGTGCCATTCCCAAGACCAC
TAACACCGCTGCTGGAGTCCTTGTCGTTAATAAGAAAGTTGGGGTCGTCC
ACCATCAGACATTGGTAGATTTTGGTGGAAAGGGATTTGAAATGCCTCGG
CGCCTTGCCAACAGGACAGGTTTCCATCTTATCGGCGAGCCAATTTATTT
TTTGCTCTTGCGTGTACCTGGGATCCTCGTACACGTCCAGCAGGCTCCGA
AGCGTGCGGTGGTGATTTTTCACCACGTAGAGAGACTTGCTATCACTCAT
TCCCGGAATGACCTCCAACTGCCGCGCCCAAGCCGTGGCATTCTTGTCCG
ACTCGCTCCAATTCTGCGTTTGACCCGCCCCACTTCCCCCTCCCCCTCCA
CTGCTGATAACTGCCTTTCCCTTCGTCGCGCTTATGAGATCAGTAGCCCT
ATCACGAAAGGGCCTTTCAGCCAATGCGCGCGTTGCCTCTCGGAGGTACA
TGGCTGTCTCTACCGGATCCTTCGTCTCCTTGTACTCAATCCCCTTCGAT
AACAACAACCAGACCAATGCATCTGCATAGTCATCCGACGTCACACACGC
CCCCCCAGTGCCCCCACTCCCCTGCCCCTT

protein sequence of jgi.p|Nanoce1779_2|591006

>mRNA_4980-protein ID=mRNA_4980-protein|Name=jgi.p|Nanoce1779_2|591006|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MAYVLNPRFLMGLSLTVICLALALGAVLTGEFANGMAVVSGSEGYASVKL
GLWYGKSKRAGRREVFRYQWCDVDSPSFHGPHCTQLQVARTAACTGVCLL
VALVVLLVLLTTCTIKIPMEGQLTRMAAGLSATASFCFVVCLAVWTILVL
SLSEKGDDSKAHLAIGMSWLAEGGAFIIAFLLTINMLQTAKRIEQEASAS
ILNAEEKTGWVEAGKASAAGGGDNPRKIEKPRAGRRSHGGGDLEA*

mRNA from alignment at scaffold_12:173666..175967+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4980 ID=mRNA_4980|Name=jgi.p|Nanoce1779_2|591006|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at scaffold_12:173666..175967+ (Nannochloropsis oceanica)
CAGGTCGCGCCCTTGCAACAAGACTTTCAAGCGAACCGAGAACACACTTC
AGCTAGCGGCGCGCTCCGTGCCCCACGGCCCCGTCTTCCCCCAGCGAGCA
CCACGGGAGCCAAGACATCTCAAGTATGGCTTATGTATTGAATCCTCGTT
TCTTGATGGGTAAGTGTTTGCTGGGATTGTTGTGCATGCCTTTTGTCCCG
AATCTTTCTTGTCTGTCTCCTTGCCCTGAGCTCCAACGTACGCCCGACTC
CGCCCCGGCGCTTGCTGTCTTTGACGAAGTGGAGGGTGTTAAGCAATCAT
TTTCTCTTTAGCTCCGTCACTTTGTATCGCATATCATTAACAATGAAGCC
TTCGCCTAGCTTCCTCATTATGTCAGGACTGTGCGTCCTTCTGTGCTCCT
ACATCCAGTCTCGGCCACGGCCTCCTCCTTTCCCCCACACTAACCTCTTT
CATTCCCATCTCAAATCAACCCTACATTATTGAATTTCACATCATATACT
GACAGGATTATCTTTGACCGTCATATGCTTGGCCCTGGCGTTGGGTGCCG
TCCTGACAGGGGAGTTTGCCAATGGGATGGCCGTGGTCAGCGGCAGTGAA
GGCTATGCATCCGTGAAGTTGGGTTTGTGGTACGGTAAATCCAAAAGGGC
AGGTCGGCGCGAAGTATTTCGATACCAGTGGTGCGATGTCGATAGCCCTT
CCTTCCACGGGCCCCACTGCACACAACTGCAGGTTGCTCGAACTGCGGCA
TGCACGGGTGTCTGTCTTCTGGTCGCCCTGGTGGTCCTCCTTGTTCTCCT
CACCACCTGCACCATAAAGATTCCTATGGAGGGGCAGTTGACGCGGATGG
CTGCGGGATTGTCCGCGACGGCCTCATTCTGTTTTGTGGTATGTTTGGCC
GTGTGGACGATTCTGGTCCTGTCGTTAAGCGAAAAGGGAGATGACAGCAA
GGCCCACCTAGCGATCGGTATGTCCTGGCTGGCGGAAGGTGGTGCGTTTA
TCATCGCCTTCCTCCTCACCATCAACATGCTTCAAACGGCCAAAAGAATA
GAGCAGGAGGCGTCGGCCTCCATCCTGAATGCCGAAGAGAAGACTGGCTG
GGTGGAGGCAGGCAAGGCAAGTGCTGCTGGCGGCGGTGACAACCCCAGGA
AAATAGAAAAGCCACGGGCTGGCAGGCGCTCGCATGGCGGAGGAGACCTT
GAGGCATAAGCATTCATATGTAAATGATTAACAAGTTATCTTTAAAGGAA
AAAATCTCATCAAAATGAGCTCACACCATAGTAGATTGGAAATTATTATC
AATCAATTTTCCTTTCTTTTTCACTCAGCTTCAAACAAACAGTTATTATA
CATACATACCGCGCCATACTCCTCCTGCTCCTACTGTTGCTGCTGTTGTT
TGTCCCAATCTCTCTCAGCACTTCTTCGTGCCATTCCCAAGACCACTAAC
ACCGCTGCTGGAGTCCTTGTCGTTAATAAGAAAGTTGGGGTCGTCCACCA
TCAGACATTGGTAGATTTTGGTGGAAAGGGATTTGAAATGCCTCGGCGCC
TGTTCGTTTGTTGGTTGATATTAAAAATAATTAAGAGGGTGATTGCGATG
GTTTAGGAAAGCTTAACAGACTGCAGAGGGCCTCCAGTGATGGATGTGTT
TGGTCACTGAAACGGTCACAACAGAGGGGGGAAAGAAAAAGGAGAAAGAA
GACACAAAAAGCGAGCACCACACAGACTCACCTTGCCAACAGGACAGGTT
TCCATCTTATCGGCGAGCCAATTTATTTTTTGCTCTTGCGTGTACCTGGG
ATCCTCGTACACGTCCAGCAGGCTCCGAAGCGTGCGGTGGTGATTTTTCA
CCACGTAGAGAGACTTGCTCTGGATGTGTGAATGAATGTGAGTTAAGATG
TCAAAAAACGATTCATATACGCTCCCCCCCCCCCCCCCTCCCCTTCCCTT
CTTTGTAACGTACATCACTCATTCCCGGAATGACCTCCAACTGCCGCGCC
CAAGCCGTGGCATTCTTGTCCGACTCGCTCCAATTCTGCGTTTGACCCGC
CCCACTTCCCCCTCCCCCTCCACTGCTGATAACTGCCTTTCCCTTCGTCG
CGCTTATGAGATCAGTAGCCCTATCACGAAAGGGCCTTTCAGCCAATGCG
CGCGTTGCCTCTCGGAGGTACATGGCTGTCTCTACCGGATCCTTCGTCTC
CTTGTACTCAATCCCCTTCGATAACAACAACCAGACCAATGCATCTGCAT
AGTCATCCGACGTCACACACGCCCCCCCAGTGCCCCCACTCCCCTGCCCC
TT

Coding sequence (CDS) from alignment at scaffold_12:173666..175967+

>mRNA_4980 ID=mRNA_4980|Name=jgi.p|Nanoce1779_2|591006|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_12:173666..175967+ (Nannochloropsis oceanica)
ATGGCTTATGTATTGAATCCTCGTTTCTTGATGGGATTATCTTTGACCGT
CATATGCTTGGCCCTGGCGTTGGGTGCCGTCCTGACAGGGGAGTTTGCCA
ATGGGATGGCCGTGGTCAGCGGCAGTGAAGGCTATGCATCCGTGAAGTTG
GGTTTGTGGTACGGTAAATCCAAAAGGGCAGGTCGGCGCGAAGTATTTCG
ATACCAGTGGTGCGATGTCGATAGCCCTTCCTTCCACGGGCCCCACTGCA
CACAACTGCAGGTTGCTCGAACTGCGGCATGCACGGGTGTCTGTCTTCTG
GTCGCCCTGGTGGTCCTCCTTGTTCTCCTCACCACCTGCACCATAAAGAT
TCCTATGGAGGGGCAGTTGACGCGGATGGCTGCGGGATTGTCCGCGACGG
CCTCATTCTGTTTTGTGGTATGTTTGGCCGTGTGGACGATTCTGGTCCTG
TCGTTAAGCGAAAAGGGAGATGACAGCAAGGCCCACCTAGCGATCGGTAT
GTCCTGGCTGGCGGAAGGTGGTGCGTTTATCATCGCCTTCCTCCTCACCA
TCAACATGCTTCAAACGGCCAAAAGAATAGAGCAGGAGGCGTCGGCCTCC
ATCCTGAATGCCGAAGAGAAGACTGGCTGGGTGGAGGCAGGCAAGGCAAG
TGCTGCTGGCGGCGGTGACAACCCCAGGAAAATAGAAAAGCCACGGGCTG
GCAGGCGCTCGCATGGCGGAGGAGACCTTGAGGCATAAATGGCTTATGTA
TTGAATCCTCGTTTCTTGATGGGATTATCTTTGACCGTCATATGCTTGGC
CCTGGCGTTGGGTGCCGTCCTGACAGGGGAGTTTGCCAATGGGATGGCCG
TGGTCAGCGGCAGTGAAGGCTATGCATCCGTGAAGTTGGGTTTGTGGTAC
GGTAAATCCAAAAGGGCAGGTCGGCGCGAAGTATTTCGATACCAGTGGTG
CGATGTCGATAGCCCTTCCTTCCACGGGCCCCACTGCACACAACTGCAGG
TTGCTCGAACTGCGGCATGCACGGGTGTCTGTCTTCTGGTCGCCCTGGTG
GTCCTCCTTGTTCTCCTCACCACCTGCACCATAAAGATTCCTATGGAGGG
GCAGTTGACGCGGATGGCTGCGGGATTGTCCGCGACGGCCTCATTCTGTT
TTGTGGTATGTTTGGCCGTGTGGACGATTCTGGTCCTGTCGTTAAGCGAA
AAGGGAGATGACAGCAAGGCCCACCTAGCGATCGGTATGTCCTGGCTGGC
GGAAGGTGGTGCGTTTATCATCGCCTTCCTCCTCACCATCAACATGCTTC
AAACGGCCAAAAGAATAGAGCAGGAGGCGTCGGCCTCCATCCTGAATGCC
GAAGAGAAGACTGGCTGGGTGGAGGCAGGCAAGGCAAGTGCTGCTGGCGG
CGGTGACAACCCCAGGAAAATAGAAAAGCCACGGGCTGGCAGGCGCTCGC
ATGGCGGAGGAGACCTTGAGGCATAA

Synonyms

Publications