jgi.p|Nanoce1779_2|520505, mRNA_5378 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|520505
Unique NamemRNA_5378
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length651
Alignment locationscaffold_13:295177..295827 -

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Properties
Property NameValue
TranscriptId520591
TrackFilteredModels2
ProteinId520505
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:295177..295827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|520505gene_5378Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5378CDS_5378Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|520505mRNA_5378-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5378 ID=mRNA_5378|Name=jgi.p|Nanoce1779_2|520505|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
GATGGACTGCCTTCGCGGTGCTACCAACAATTTAAGGCACACGCCACGGA
CGTCAACGACGTGGCTTACAATGAGAATGGTGCCTGGCTGGCCACCGCGG
GTGGAGACGGGTATGTTCGTGTGTGGGAAGAAAGGACGGGTCGCCTGAAA
ACGACATTACATGGAGCGGATGTGATGCTGGGGTTGGATTTTCGGGGAGA
TTTTGTGGTGGGGGGAAGCAGCGACCACACCTGCAAGCTGTGGAGCCTGG
CTTCCGAACGCGTGCATCGCACGTTTGTTGGACATTCAGGTAACGTCTAT
GCAGTAAAAATGGTGGCGGGGGATGGGCGTGCAATTCTAACTGGAGGTGC
GGACCGAACTATCCGCTTGTGGGATGTAGGGAGAGTTAATTGCAAACAGA
TTTTGCGGTCGGGCTCGACGTGTAATGGGCTGGATATAGGCATGGATGGC
CATGTGCCCGTCTCAGCGCACCAGGATGGAGGTCTTCGTGTGTGGGATCT
ACGTGCTGGAAACCCTAGTATGATTGTGCGGGCATTTGAGACGCAAGCAA
CCTCGGTGCAGTATGGGCAGAATTTTACGGTGCTTGCCAACTCTCGTGAC
AATGTCATTAAAATCGTTGACACGCGGACGTTTGAGACCCTCCATGTTCT
G
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protein sequence of jgi.p|Nanoce1779_2|520505

>mRNA_5378-protein ID=mRNA_5378-protein|Name=jgi.p|Nanoce1779_2|520505|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
DGLPSRCYQQFKAHATDVNDVAYNENGAWLATAGGDGYVRVWEERTGRLK
TTLHGADVMLGLDFRGDFVVGGSSDHTCKLWSLASERVHRTFVGHSGNVY
AVKMVAGDGRAILTGGADRTIRLWDVGRVNCKQILRSGSTCNGLDIGMDG
HVPVSAHQDGGLRVWDLRAGNPSMIVRAFETQATSVQYGQNFTVLANSRD
NVIKIVDTRTFETLHVL
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mRNA from alignment at scaffold_13:295177..295827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5378 ID=mRNA_5378|Name=jgi.p|Nanoce1779_2|520505|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at scaffold_13:295177..295827- (Nannochloropsis oceanica)
GATGGACTGCCTTCGCGGTGCTACCAACAATTTAAGGCACACGCCACGGA
CGTCAACGACGTGGCTTACAATGAGAATGGTGCCTGGCTGGCCACCGCGG
GTGGAGACGGGTATGTTCGTGTGTGGGAAGAAAGGACGGGTCGCCTGAAA
ACGACATTACATGGAGCGGATGTGATGCTGGGGTTGGATTTTCGGGGAGA
TTTTGTGGTGGGGGGAAGCAGCGACCACACCTGCAAGCTGTGGAGCCTGG
CTTCCGAACGCGTGCATCGCACGTTTGTTGGACATTCAGGTAACGTCTAT
GCAGTAAAAATGGTGGCGGGGGATGGGCGTGCAATTCTAACTGGAGGTGC
GGACCGAACTATCCGCTTGTGGGATGTAGGGAGAGTTAATTGCAAACAGA
TTTTGCGGTCGGGCTCGACGTGTAATGGGCTGGATATAGGCATGGATGGC
CATGTGCCCGTCTCAGCGCACCAGGATGGAGGTCTTCGTGTGTGGGATCT
ACGTGCTGGAAACCCTAGTATGATTGTGCGGGCATTTGAGACGCAAGCAA
CCTCGGTGCAGTATGGGCAGAATTTTACGGTGCTTGCCAACTCTCGTGAC
AATGTCATTAAAATCGTTGACACGCGGACGTTTGAGACCCTCCATGTTCT
G
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Coding sequence (CDS) from alignment at scaffold_13:295177..295827-

>mRNA_5378 ID=mRNA_5378|Name=jgi.p|Nanoce1779_2|520505|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_13:295177..295827- (Nannochloropsis oceanica)
GATGGACTGCCTTCGCGGTGCTACCAACAATTTAAGGCACACGCCACGGA
CGTCAACGACGTGGCTTACAATGAGAATGGTGCCTGGCTGGCCACCGCGG
GTGGAGACGGGTATGTTCGTGTGTGGGAAGAAAGGACGGGTCGCCTGAAA
ACGACATTACATGGAGCGGATGTGATGCTGGGGTTGGATTTTCGGGGAGA
TTTTGTGGTGGGGGGAAGCAGCGACCACACCTGCAAGCTGTGGAGCCTGG
CTTCCGAACGCGTGCATCGCACGTTTGTTGGACATTCAGGTAACGTCTAT
GCAGTAAAAATGGTGGCGGGGGATGGGCGTGCAATTCTAACTGGAGGTGC
GGACCGAACTATCCGCTTGTGGGATGTAGGGAGAGTTAATTGCAAACAGA
TTTTGCGGTCGGGCTCGACGTGTAATGGGCTGGATATAGGCATGGATGGC
CATGTGCCCGTCTCAGCGCACCAGGATGGAGGTCTTCGTGTGTGGGATCT
ACGTGCTGGAAACCCTAGTATGATTGTGCGGGCATTTGAGACGCAAGCAA
CCTCGGTGCAGTATGGGCAGAATTTTACGGTGCTTGCCAACTCTCGTGAC
AATGTCATTAAAATCGTTGACACGCGGACGTTTGAGACCCTCCATGTTCT
G
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Synonyms
Publications