jgi.p|Nanoce1779_2|529570, mRNA_5282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529570
Unique NamemRNA_5282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length867
Alignment locationscaffold_13:66423..67289 +

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Properties
Property NameValue
TranscriptId529656
TrackFilteredModels2
ProteinId529570
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:66423..67289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529570gene_5282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529570mRNA_5282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5282CDS_5282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5282 ID=mRNA_5282|Name=jgi.p|Nanoce1779_2|529570|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGCAAGGGAAAACGGAAGAGGCCCACTCGTATTTCGAGGAGAAGAAGGC
AACAAGCGTGCCTATGTACCGTCAGACCCTCCGCTATCACTGGACGCAAA
CCGAAACTGAAATCCACGTAGGTGTCCCCGTCCCCAAGGCCGTGCGGGGG
GCCAACATGCATTTAATTGTGGCAGAAGACGCATTACAGTTGGCTCTGAC
AGACACTCCGTCCTTTGGAGTCATTGCGGGAAAGTTTGCCGGAGAGATCG
ACCCTTCTACCTCAGGATGGCAACTGAAGCAGAAGCCCGATGGCAGCCAT
TCGGTGTCTATGACACTGAAAAAACAGACGCAGCCAGGCACGCATTCTCT
GTGGTACCAACTAATGCAGGGGGAGAAGCTGGCAACCTGTATGCAGTTTA
GGGGCCAGGGAGGGAGGGACGGCGAAGAGAGGTATCATTGGAATCAAGAT
TTGGACTACATGAATGTTTTCATCCCGATCCCAATGGAGGTGAGGGGTAA
AGCGGTCCAGCTCACGATTGATGCTGCAGGCAAGAGTATGGAGCTGAGTT
ATCCCGTGGAGGCGGGAGAGGGAGAGGGAGGGAGGGTGAGGGTAGGGGGG
GAGTTTTCGGGTTTGGTAAGTCCAGATGAGTGTTCGTGGGTAATTGATGA
GGATGAGAAGGGGGTGCGGTGTGTATGCCTTAGTTTGAGAAAGAGGAGGA
GGGAGGCACGTGAGTCAACGTGGTGGTCGAGGTGTTTTAGAGAGGAGGAG
AATGTGGTTCCGCCCGAGATGCAAGGTTCGTTGGAGGAGGGGCAGGAGAA
GGTAAGGGAAGAGCGGGAGAGGTACGAGAGGGAATTGAATGGGGAGGATG
GTTGGGGGGATGAGTAA
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protein sequence of jgi.p|Nanoce1779_2|529570

>mRNA_5282-protein ID=mRNA_5282-protein|Name=jgi.p|Nanoce1779_2|529570|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MQGKTEEAHSYFEEKKATSVPMYRQTLRYHWTQTETEIHVGVPVPKAVRG
ANMHLIVAEDALQLALTDTPSFGVIAGKFAGEIDPSTSGWQLKQKPDGSH
SVSMTLKKQTQPGTHSLWYQLMQGEKLATCMQFRGQGGRDGEERYHWNQD
LDYMNVFIPIPMEVRGKAVQLTIDAAGKSMELSYPVEAGEGEGGRVRVGG
EFSGLVSPDECSWVIDEDEKGVRCVCLSLRKRRREARESTWWSRCFREEE
NVVPPEMQGSLEEGQEKVREERERYERELNGEDGWGDE*
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mRNA from alignment at scaffold_13:66423..67289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5282 ID=mRNA_5282|Name=jgi.p|Nanoce1779_2|529570|organism=Nannochloropsis oceanica|type=mRNA|length=867bp|location=Sequence derived from alignment at scaffold_13:66423..67289+ (Nannochloropsis oceanica)
ATGCAAGGGAAAACGGAAGAGGCCCACTCGTATTTCGAGGAGAAGAAGGC
AACAAGCGTGCCTATGTACCGTCAGACCCTCCGCTATCACTGGACGCAAA
CCGAAACTGAAATCCACGTAGGTGTCCCCGTCCCCAAGGCCGTGCGGGGG
GCCAACATGCATTTAATTGTGGCAGAAGACGCATTACAGTTGGCTCTGAC
AGACACTCCGTCCTTTGGAGTCATTGCGGGAAAGTTTGCCGGAGAGATCG
ACCCTTCTACCTCAGGATGGCAACTGAAGCAGAAGCCCGATGGCAGCCAT
TCGGTGTCTATGACACTGAAAAAACAGACGCAGCCAGGCACGCATTCTCT
GTGGTACCAACTAATGCAGGGGGAGAAGCTGGCAACCTGTATGCAGTTTA
GGGGCCAGGGAGGGAGGGACGGCGAAGAGAGGTATCATTGGAATCAAGAT
TTGGACTACATGAATGTTTTCATCCCGATCCCAATGGAGGTGAGGGGTAA
AGCGGTCCAGCTCACGATTGATGCTGCAGGCAAGAGTATGGAGCTGAGTT
ATCCCGTGGAGGCGGGAGAGGGAGAGGGAGGGAGGGTGAGGGTAGGGGGG
GAGTTTTCGGGTTTGGTAAGTCCAGATGAGTGTTCGTGGGTAATTGATGA
GGATGAGAAGGGGGTGCGGTGTGTATGCCTTAGTTTGAGAAAGAGGAGGA
GGGAGGCACGTGAGTCAACGTGGTGGTCGAGGTGTTTTAGAGAGGAGGAG
AATGTGGTTCCGCCCGAGATGCAAGGTTCGTTGGAGGAGGGGCAGGAGAA
GGTAAGGGAAGAGCGGGAGAGGTACGAGAGGGAATTGAATGGGGAGGATG
GTTGGGGGGATGAGTAA
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Coding sequence (CDS) from alignment at scaffold_13:66423..67289+

>mRNA_5282 ID=mRNA_5282|Name=jgi.p|Nanoce1779_2|529570|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_13:66423..67289+ (Nannochloropsis oceanica)
ATGCAAGGGAAAACGGAAGAGGCCCACTCGTATTTCGAGGAGAAGAAGGC
AACAAGCGTGCCTATGTACCGTCAGACCCTCCGCTATCACTGGACGCAAA
CCGAAACTGAAATCCACGTAGGTGTCCCCGTCCCCAAGGCCGTGCGGGGG
GCCAACATGCATTTAATTGTGGCAGAAGACGCATTACAGTTGGCTCTGAC
AGACACTCCGTCCTTTGGAGTCATTGCGGGAAAGTTTGCCGGAGAGATCG
ACCCTTCTACCTCAGGATGGCAACTGAAGCAGAAGCCCGATGGCAGCCAT
TCGGTGTCTATGACACTGAAAAAACAGACGCAGCCAGGCACGCATTCTCT
GTGGTACCAACTAATGCAGGGGGAGAAGCTGGCAACCTGTATGCAGTTTA
GGGGCCAGGGAGGGAGGGACGGCGAAGAGAGGTATCATTGGAATCAAGAT
TTGGACTACATGAATGTTTTCATCCCGATCCCAATGGAGGTGAGGGGTAA
AGCGGTCCAGCTCACGATTGATGCTGCAGGCAAGAGTATGGAGCTGAGTT
ATCCCGTGGAGGCGGGAGAGGGAGAGGGAGGGAGGGTGAGGGTAGGGGGG
GAGTTTTCGGGTTTGGTAAGTCCAGATGAGTGTTCGTGGGTAATTGATGA
GGATGAGAAGGGGGTGCGGTGTGTATGCCTTAGTTTGAGAAAGAGGAGGA
GGGAGGCACGTGAGTCAACGTGGTGGTCGAGGTGTTTTAGAGAGGAGGAG
AATGTGGTTCCGCCCGAGATGCAAGGTTCGTTGGAGGAGGGGCAGGAGAA
GGTAAGGGAAGAGCGGGAGAGGTACGAGAGGGAATTGAATGGGGAGGATG
GTTGGGGGGATGAGTAA
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Synonyms
Publications