jgi.p|Nanoce1779_2|592034, mRNA_5293 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592034
Unique NamemRNA_5293
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1242
Alignment locationscaffold_13:89468..90970 -

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Properties
Property NameValue
TranscriptId592120
TrackFilteredModels2
ProteinId592034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:89468..90970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592034gene_5293Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592034mRNA_5293-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5293CDS_5293Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5293 ID=mRNA_5293|Name=jgi.p|Nanoce1779_2|592034|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ACGACAGGCAAAGGCAGTCCCGACAGGCACCCAGAGGGCCGAAGATCAAG
ACCTTTTCCGCGCAAGTGAGAAGAAAACCTCCTGCCTTTTGCTTCCATAC
CTTCCACACCATGCGCGTCTCCGTCAAAAACATGACATTGGGCGTCGGAA
GTTACCTGGGCATCATCGGCGGGGGCTACTGGTGGGCCTTGAGCCAACGG
GAAGACGCTGCTAAGAAAGAGCTCGGGGAAAAGGCAGAGGACGAGCAGGG
CAACCCTAAGCAATTCTCAGAGGAAGAGCGTCTGGCAATCTTTCGAGAGG
GGGCCTCGGGCTACGACAAGCAGATTGGAACTGATGAGACAGTTATGGGC
TTAAACTTGTTGCGGCGATGGTTGTTGCGCGAAGCCAAGGGGAAGGTTTT
AGAAGTGGCGGGCGGGACGGGAAGGAACCTGGAGTATTTCCCTCAAAGTG
TGGAGCTGACGATTATCGATTTGTGCGAGGGGATGATGGCTGAGACTGAG
CGCAAATTGAGGAAAAGCCGTCGCGGCGATGTGACATTTGGTAGAATGGA
CGTGAACCGCATGAGCTTCCCCAGCCGTACCTTCGACACAGTCTGCGATA
CTTTTGGTCTATGCTCATTCGAGGACCCCCAACAATCATTGCAAGAGATG
GAAAGGGTGTGTAAGGACGACGGCCAGATTCTGTTGTTGGAGCACGGGCG
GAGTCATTATCAATGGCTGAACGCGATATTGGACAAAAACAGTCATCGGC
ACACTGCTCGGTGGGGATGTGTATGGAACCGGGATATTGAGAAAATGGTC
CGTGAGGCGGGCCTGGAGGTGACGAGTATGACGAGGTGGCATTTCGGGAC
GACTTACCTGATTCATGCCAAGCCGGGAAAGAGGGAGGGAGATCAGATGA
AGAGAGAAGACAAGGGAGGAGATGGAAAGAGGAAGGGAGATCGGAGGAGG
AGAGAAGATGAGGGAGGAGATGGAAAGAGGAGGGGGTGGTGGGCCTGGCT
GAGTGGTAGGAGGCCAACGTGGACAAAACAGCAACCGTAATGTAAAATAT
ACGTATTCATCAAAAGAGCACGATGACTAGAACGAAAACATGTCTCCTAG
GAGCTCACTGTACGCGAGTGATTCATTGGTACTTTCGTCACCCTTTTCTG
GCCTTGTTGGTTTCCACACCCCACACCTTCGACCGTTCTCCTTCTCTTCC
TTTTCCCCCTCCGCCTCTCCCTTCCCTTCCTCCTCGGCCTCT
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protein sequence of jgi.p|Nanoce1779_2|592034

>mRNA_5293-protein ID=mRNA_5293-protein|Name=jgi.p|Nanoce1779_2|592034|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRVSVKNMTLGVGSYLGIIGGGYWWALSQREDAAKKELGEKAEDEQGNPK
QFSEEERLAIFREGASGYDKQIGTDETVMGLNLLRRWLLREAKGKVLEVA
GGTGRNLEYFPQSVELTIIDLCEGMMAETERKLRKSRRGDVTFGRMDVNR
MSFPSRTFDTVCDTFGLCSFEDPQQSLQEMERVCKDDGQILLLEHGRSHY
QWLNAILDKNSHRHTARWGCVWNRDIEKMVREAGLEVTSMTRWHFGTTYL
IHAKPGKREGDQMKREDKGGDGKRKGDRRRREDEGGDGKRRGWWAWLSGR
RPTWTKQQP*
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mRNA from alignment at scaffold_13:89468..90970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5293 ID=mRNA_5293|Name=jgi.p|Nanoce1779_2|592034|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp|location=Sequence derived from alignment at scaffold_13:89468..90970- (Nannochloropsis oceanica)
ACGACAGGCAAAGGCAGTCCCGACAGGCACCCAGAGGGCCGAAGATCAAG
ACCTTTTCCGCGCAAGTGAGAAGAAAACCTCCTGCCTTTTGCTTCCATAC
CTTCCACACCATGCGCGTCTCCGTCAAAAACATGACATTGGGCGTCGGAA
GTTACCTGGGCATCATCGGCGGGGGCTACTGGTGGGCCTTGAGCCAACGG
GAAGACGCTGCTAAGAAAGAGCTCGGGGAAAAGGCAGAGGACGAGCAGGG
CAACCCTAAGCAATTCTCAGAGGAAGAGCGTCTGGCAATCTTTCGAGAGG
GGGCCTCGGGCTACGACAAGCAGATTGGAACTGATGAGACAGTTATGGGC
TTAAACTTGTTGCGGCGATGGTTGTTGCGCGAAGCCAAGGGGAAGGTTTT
AGAAGTGGCGGGCGGGACGGGAAGGAACCTGGAGTATTTCCCTCAAAGTG
TGGAGCTGACGATTATCGATTTGTGCGAGGGGATGATGGCTGAGACTGAG
CGCAAATTGAGGAAAAGGTAATATGTGAAGAAAAAGGCGAGATGTACGTA
TAACATATTAATGGGAGGCCGGTGGCTCAGAGAGGGCGCAGCATGAAAGG
CCACGATGAGTTGCTTTTTGCTCTTTGGAAGGAAGAATGCTAGGAGTGGC
GCACACGATGAGGGGAAACGGAATGGGGTGGGGGGAAGGAGTCATGGATA
GAAGCAGGTGAAACATCGGGTGTTGTGCCTCATCCCCTTTCTTGCCCTCT
CCCCTACTTCCCTCCTTTTCCCCATCAGCCGTCGCGGCGATGTGACATTT
GGTAGAATGGACGTGAACCGCATGAGCTTCCCCAGCCGTACCTTCGACAC
AGTCTGCGATACTTTTGGTCTATGCTCATTCGAGGACCCCCAACAATCAT
TGCAAGAGATGGAAAGGGTGTGTAAGGACGACGGCCAGATTCTGTTGTTG
GAGCACGGGCGGAGTCATTATCAATGGCTGAACGCGATATTGGACAAAAA
CAGTCATCGGCACACTGCTCGGTGGGGATGTGTATGGAACCGGGATATTG
AGAAAATGGTCCGTGAGGCGGGCCTGGAGGTGACGAGTATGACGAGGTGG
CATTTCGGGACGACTTACCTGATTCATGCCAAGCCGGGAAAGAGGGAGGG
AGATCAGATGAAGAGAGAAGACAAGGGAGGAGATGGAAAGAGGAAGGGAG
ATCGGAGGAGGAGAGAAGATGAGGGAGGAGATGGAAAGAGGAGGGGGTGG
TGGGCCTGGCTGAGTGGTAGGAGGCCAACGTGGACAAAACAGCAACCGTA
ATGTAAAATATACGTATTCATCAAAAGAGCACGATGACTAGAACGAAAAC
ATGTCTCCTAGGAGCTCACTGTACGCGAGTGATTCATTGGTACTTTCGTC
ACCCTTTTCTGGCCTTGTTGGTTTCCACACCCCACACCTTCGACCGTTCT
CCTTCTCTTCCTTTTCCCCCTCCGCCTCTCCCTTCCCTTCCTCCTCGGCC
TCT
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Coding sequence (CDS) from alignment at scaffold_13:89468..90970-

>mRNA_5293 ID=mRNA_5293|Name=jgi.p|Nanoce1779_2|592034|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_13:89468..90970- (Nannochloropsis oceanica)
CCGTCGCGGCGATGTGACATTTGGTAGAATGGACGTGAACCGCATGAGCT
TCCCCAGCCGTACCTTCGACACAGTCTGCGATACTTTTGGTCTATGCTCA
TTCGAGGACCCCCAACAATCATTGCAAGAGATGGAAAGGGTGTGTAAGGA
CGACGGCCAGATTCTGTTGTTGGAGCACGGGCGGAGTCATTATCAATGGC
TGAACGCGATATTGGACAAAAACAGTCATCGGCACACTGCTCGGTGGGGA
TGTGTATGGAACCGGGATATTGAGAAAATGGTCCGTGAGGCGGGCCTGGA
GGTGACGAGTATGACGAGGTGGCATTTCGGGACGACTTACCTGATTCATG
CCAAGCCGGGAAAGAGGGAGGGAGATCAGATGAAGAGAGAAGACAAGGGA
GGAGATGGAAAGAGGAAGGGAGATCGGAGGAGGAGAGAAGATGAGGGAGG
AGATGGAAAGAGGAGGGGGTGGTGGGCCTGGCTGAGTGGTAGGAGGCCAA
CGTGGACAAAACAGCAACCGTAAATGCGCGTCTCCGTCAAAAACATGACA
TTGGGCGTCGGAAGTTACCTGGGCATCATCGGCGGGGGCTACTGGTGGGC
CTTGAGCCAACGGGAAGACGCTGCTAAGAAAGAGCTCGGGGAAAAGGCAG
AGGACGAGCAGGGCAACCCTAAGCAATTCTCAGAGGAAGAGCGTCTGGCA
ATCTTTCGAGAGGGGGCCTCGGGCTACGACAAGCAGATTGGAACTGATGA
GACAGTTATGGGCTTAAACTTGTTGCGGCGATGGTTGTTGCGCGAAGCCA
AGGGGAAGGTTTTAGAAGTGGCGGGCGGGACGGGAAGGAACCTGGAGTAT
TTCCCTCAAAGTGTGGAGCTGACGATTATCGATTTGTGCGAGGGGATGAT
GGCTGAGACTGAGCGCAAATTGAGGAAAAGCCGTCGCGGCGATGTGACAT
TTGGTAGAATGGACGTGAACCGCATGAGCTTCCCCAGCCGTACCTTCGAC
ACAGTCTGCGATACTTTTGGTCTATGCTCATTCGAGGACCCCCAACAATC
ATTGCAAGAGATGGAAAGGGTGTGTAAGGACGACGGCCAGATTCTGTTGT
TGGAGCACGGGCGGAGTCATTATCAATGGCTGAACGCGATATTGGACAAA
AACAGTCATCGGCACACTGCTCGGTGGGGATGTGTATGGAACCGGGATAT
TGAGAAAATGGTCCGTGAGGCGGGCCTGGAGGTGACGAGTATGACGAGGT
GGCATTTCGGGACGACTTACCTGATTCATGCCAAGCCGGGAAAGAGGGAG
GGAGATCAGATGAAGAGAGAAGACAAGGGAGGAGATGGAAAGAGGAAGGG
AGATCGGAGGAGGAGAGAAGATGAGGGAGGAGATGGAAAGAGGAGGGGGT
GGTGGGCCTGGCTGAGTGGTAGGAGGCCAACGTGGACAAAACAGCAACCG
TAAATGCGCGTCTCCGTCAAAAACATGACATTGGGCGTCGGAAGTTACCT
GGGCATCATCGGCGGGGGCTACTGGTGGGCCTTGAGCCAACGGGAAGACG
CTGCTAAGAAAGAGCTCGGGGAAAAGGCAGAGGACGAGCAGGGCAACCCT
AAGCAATTCTCAGAGGAAGAGCGTCTGGCAATCTTTCGAGAGGGGGCCTC
GGGCTACGACAAGCAGATTGGAACTGATGAGACAGTTATGGGCTTAAACT
TGTTGCGGCGATGGTTGTTGCGCGAAGCCAAGGGGAAGGTTTTAGAAGTG
GCGGGCGGGACGGGAAGGAACCTGGAGTATTTCCCTCAAAGTGTGGAGCT
GACGATTATCGATTTGTGCGAGGGGATGATGGCTGAGACTGAGCGCAAAT
TGAGGAAAAG
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Synonyms
Publications