jgi.p|Nanoce1779_2|592622, mRNA_5470 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592622
Unique NamemRNA_5470
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1462
Alignment locationscaffold_13:488407..490572 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592708
TrackFilteredModels2
ProteinId592622
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:488407..490572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592622gene_5470Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592622mRNA_5470-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5470CDS_5470Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5470 ID=mRNA_5470|Name=jgi.p|Nanoce1779_2|592622|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp
AACGACCACACAACTTTCGGTGACTGCGAGAAACCGAATTGGAACACTCA
TCCCAAGCGCCAGCGGCAACTTCAGAGCGATGCTGCTTCAACAAGTCAAG
ACCAACTTTCTACGGCCATCAGCAGACCTCGCCCTCCTCCTCCTCGTTAT
CCTTGTTCTCTTGCCTATCACCACCACAGCGTTCTCTGGTAGCACCTTGA
CAAGCCTGTCGCCGCAAAACCCGCCTCCGCCCAAGGGGGGGATGAGCGTT
GGGATCACCCCACGGGAGTTTTTGATGGAACGCCCTCCGGGTCCTTACAC
TTGCCTTCGAGCCCGCGACGGTGCATTGTTAGGTTTTGACTTTCACATGC
AGCGCTTGATGCACGCGATTCGAGCCTCGGGGGGCAGTGGAAGCAGGGTG
CAAGAGAAGGAAATGCGCATCCAAGTGCTTGACGTGATTGCCGGGGCCCT
GGAAGACGCAGCCCTCCTTCGGAGAGTAGAGGAATCTGGCGAACAGAAGC
CCTTTAAAACCCCCATCGACGCCTTTGTGACTGTCCACGCCGCGATCTCC
TCCTCCTCTTTATCGTCGGGCCTGGTCTTAAACGCCCACGCCGTGACCAT
GCCCTATGCAATCATGCCTCCAGCCATAACCTTGGAAGTCCGAGGCGATG
GGCGGCAACACCCAGAAATCAAACACTCCAGATGGGTACGTGACAGACAA
GAACTCGAGCGGTTTCGCTCGGGTCCTGGGGGGGAGGTAGCTTTGTCTCG
CCCTGTAGGATCTGGGAGGGATAGAGAGGTCTTGGAGGGGTTGGTGAGCA
ATATTTTTGCAGTCAAGGGAGGGAAGCTCGTGACGGCCCAAGATGGTGTG
TTGCCGGGGCATATGCGATCAATGACACTAGAAGCCGCGCGATCTTTAGG
TGTGCCGGTGGGGGAAGTGAATGACTGTTTGAGAATTGAGGAAATCGGGG
AGTGGGAGGAGGCATTTTTGACAGGCTCGGGACGGGTGCTAGTTCCGATT
GGAAGGGTGGAGGGAACGAGTGTGGGGTTGTCGGGAGTAGATCTGCCGAT
GGCACCAGGGCCGATGACCAACTTATTGAGAGCACGGTTGCTATTTGACA
TGAATGAGGGATGGGAAGGCATGGAGGAGCTACGGAGGATGTGAGGGAGG
AACAACAGCAGCCTGGAGGGAAGAAAAGTAGTGAGCGATACAGAAATTAG
ATGATATACAAATCGGATGTTTCCCAGAATTACCCATTACCAGCTGCGAG
ACAGTTTGGGTGACAAATTCAAAAATGCAGATGACTGAGAATTGAATGTA
GATGACATGTGTGTGGTAGTAGGAGAGGGAATATAAGGTAAGAGTCGAGA
GGTAGAAATTTTGACAGGGGGTAATATGATTGATTGGTATGTAGGAGAAG
AAGGCGAAGCGATGCAAAGGCACACATAGATATGCAAACAAGATGACTTT
TTGCAAGCCTTC
back to top

protein sequence of jgi.p|Nanoce1779_2|592622

>mRNA_5470-protein ID=mRNA_5470-protein|Name=jgi.p|Nanoce1779_2|592622|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MLLQQVKTNFLRPSADLALLLLVILVLLPITTTAFSGSTLTSLSPQNPPP
PKGGMSVGITPREFLMERPPGPYTCLRARDGALLGFDFHMQRLMHAIRAS
GGSGSRVQEKEMRIQVLDVIAGALEDAALLRRVEESGEQKPFKTPIDAFV
TVHAAISSSSLSSGLVLNAHAVTMPYAIMPPAITLEVRGDGRQHPEIKHS
RWVRDRQELERFRSGPGGEVALSRPVGSGRDREVLEGLVSNIFAVKGGKL
VTAQDGVLPGHMRSMTLEAARSLGVPVGEVNDCLRIEEIGEWEEAFLTGS
GRVLVPIGRVEGTSVGLSGVDLPMAPGPMTNLLRARLLFDMNEGWEGMEE
LRRM*
back to top

mRNA from alignment at scaffold_13:488407..490572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5470 ID=mRNA_5470|Name=jgi.p|Nanoce1779_2|592622|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at scaffold_13:488407..490572+ (Nannochloropsis oceanica)
AACGACCACACAACTTTCGGTGACTGCGAGAAACCGAATTGGAACACTCA
TCCCAAGCGCCAGCGGCAACTTCAGAGCGATGCTGCTTCAACAAGTCAAG
ACCAACTTTCTACGGCCATCAGCAGACCTCGCCCTCCTCCTCCTCGTTAT
CCTTGTTCTCTTGCCTATCACCACCACAGCGTTCTCTGGTAGCACCTTGA
CAAGCCTGTCGCCGCAAAACCCGCCTCCGCCCAAGGGGGGGATGAGCGTT
GGGATCACCCCACGGGAGTTTTTGATGGAACGCCCTCCGGGTCCTTACAC
TTGCCTTCGAGCCCGCGACGGTGCATTGTTAGGTTTTGACTTTCACATGC
AGCGCTTGATGCACGCGATTCGAGCCTCGGGGGGCAGTGGAAGCAGGGTG
CAAGAGAAGGAAATGCGCATCCAAGTGCTTGACGTGATTGCCGGGGCCCT
GGAAGACGCAGCCCTCCTTCGGAGAGTAGAGGAATCTGGCGAACAGAAGC
CCTTTAAAACCCCCATCGACGCCTTTGTGACTGTCCACGCCGCGATCTCC
TCCTCCTCTTTATCGTCGGGCCTGGTCTTAAACGCCCACGCCGTGACCAT
GCCCTATGCAATCATGCCTCCAGCCATAACCTTGGAAGTCCGAGGCGATG
GGCGGCAACACCCAGAAATCAAACACTCCAGATGGGTACGTGACAGACAA
GAACTCGAGCGGTTTCGCTCGGGTCCTGGGGGGGAGGTAGCTTTGTCTCG
CCCTGTAGGATCTGGGAGGGATAGAGAGGTCTTGGAGGGGTTGGTGAGCA
ATATTTTTGCAGTCAAGGGAGGGAAGCTCGTGACGGCCCAAGATGGTGTG
TTGCCGGGGCATATGCGATCAATGACACTAGAAGCCGCGCGATCTTTAGG
TGTGCCGGTGGGGGAAGTGAATGACTGTTTGAGAATTGAGGAAATCGGGG
AGTGGGAGGAGGCATTTTTGACAGGCTCGGGACGGGTGCTAGTTCCGATT
GGAAGGGTGGAGGGAACGAGTGTGGGGTTGTCGGGAGTAGATCTGCCGAT
GGCACCAGGGCCGATGACCAACTTATTGAGAGCACGGTTGCTATTTGACA
TGAATGAGGGATGGGAAGGCATGGAGGAGCTACGGAGGATGTGAGGGAGG
AACAACAGCAGCCTGGAGGGAAGAAAAGTAGTGAGCGGTAAGTTTTTGGT
CGTCGGTGAAAGAGCGGGAAGGATAGTTCTGTGTATTTTAATTTGTACAC
CGTATCTCAAATCTCTCCTGGCATGTGTGTCTGTCCGTTTACCATTGTGT
GCGCACTCTTTCCTTTGTCTCCTGTCTCTTCCCCTCCCTCCCCGCCTCCC
CTCCTCCCTCAATCGCCGCCTTATGACAATTAAAAGGAGTTCCTTCATCC
TACGGACATTCACTTTTACGAAAAGGTCGGCAGATTCATTTTTTATAACA
ACACTCTTTCCATCCCTCTTGCCTTTGAACAATCATGGCATCACCGGACT
TCCAAGGGAGTGCACATCTCTTTCCGTTGATTGGACGATTTCTTCTTGTA
CATATACATACACCTGCCGCTGTGTGTATGTGTGTGTGCTTCTGTGTCGC
TGAGATTGTATGTCTGCATTTCTCACCGCCCCTCTCCCTAGCTCTAAATG
TATGTCGCTGCTTCTGTCGGTGTGAGTAAGGAAGTTGGTAATTAATTGTG
TCATGCCAGGTCCGTCTTCGTAGTCCCTCTCCATCTCTCATTCTCACGAG
TCGTACGTTTTATCAGTCCCTCCTGTATATTCTTTCTATCGTTAGAAAAC
CTCAAGGTTTATCCTCTTCTCACATTTTCAATCACTGATCCTCTTTCCTT
CTTCCCCTCCGCGCTTGGTTTCCTCCCGCCTTCGGCACAAGATACAGAAA
TTAGATGATATACAAATCGGATGTTTCCCAGAATTACCCATTACCAGCTG
CGAGACAGTTTGGGTGACAAATTCAAAAATGCAGATGACTGAGAATTGAA
TGTAGATGACATGTGTGTGGTAGTAGGAGAGGGAATATAAGGTAAGAGTC
GAGAGGTAGAAATTTTGACAGGGGGTAATATGATTGATTGGTATGTAGGA
GAAGAAGGCGAAGCGATGCAAAGGCACACATAGATATGCAAACAAGATGA
CTTTTTGCAAGCCTTC
back to top

Coding sequence (CDS) from alignment at scaffold_13:488407..490572+

>mRNA_5470 ID=mRNA_5470|Name=jgi.p|Nanoce1779_2|592622|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_13:488407..490572+ (Nannochloropsis oceanica)
ATGCTGCTTCAACAAGTCAAGACCAACTTTCTACGGCCATCAGCAGACCT
CGCCCTCCTCCTCCTCGTTATCCTTGTTCTCTTGCCTATCACCACCACAG
CGTTCTCTGGTAGCACCTTGACAAGCCTGTCGCCGCAAAACCCGCCTCCG
CCCAAGGGGGGGATGAGCGTTGGGATCACCCCACGGGAGTTTTTGATGGA
ACGCCCTCCGGGTCCTTACACTTGCCTTCGAGCCCGCGACGGTGCATTGT
TAGGTTTTGACTTTCACATGCAGCGCTTGATGCACGCGATTCGAGCCTCG
GGGGGCAGTGGAAGCAGGGTGCAAGAGAAGGAAATGCGCATCCAAGTGCT
TGACGTGATTGCCGGGGCCCTGGAAGACGCAGCCCTCCTTCGGAGAGTAG
AGGAATCTGGCGAACAGAAGCCCTTTAAAACCCCCATCGACGCCTTTGTG
ACTGTCCACGCCGCGATCTCCTCCTCCTCTTTATCGTCGGGCCTGGTCTT
AAACGCCCACGCCGTGACCATGCCCTATGCAATCATGCCTCCAGCCATAA
CCTTGGAAGTCCGAGGCGATGGGCGGCAACACCCAGAAATCAAACACTCC
AGATGGGTACGTGACAGACAAGAACTCGAGCGGTTTCGCTCGGGTCCTGG
GGGGGAGGTAGCTTTGTCTCGCCCTGTAGGATCTGGGAGGGATAGAGAGG
TCTTGGAGGGGTTGGTGAGCAATATTTTTGCAGTCAAGGGAGGGAAGCTC
GTGACGGCCCAAGATGGTGTGTTGCCGGGGCATATGCGATCAATGACACT
AGAAGCCGCGCGATCTTTAGGTGTGCCGGTGGGGGAAGTGAATGACTGTT
TGAGAATTGAGGAAATCGGGGAGTGGGAGGAGGCATTTTTGACAGGCTCG
GGACGGGTGCTAGTTCCGATTGGAAGGGTGGAGGGAACGAGTGTGGGGTT
GTCGGGAGTAGATCTGCCGATGGCACCAGGGCCGATGACCAACTTATTGA
GAGCACGGTTGCTATTTGACATGAATGAGGGATGGGAAGGCATGGAGGAG
CTACGGAGGATGTGA
back to top
Synonyms
Publications