jgi.p|Nanoce1779_2|84339, mRNA_6188 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|84339
Unique NamemRNA_6188
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length796
Alignment locationscaffold_14:751088..752515 -

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Properties
Property NameValue
TranscriptId84425
TrackFilteredModels2
ProteinId84339
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:751088..752515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84339gene_6188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84339mRNA_6188-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6188CDS_6188Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6188 ID=mRNA_6188|Name=jgi.p|Nanoce1779_2|84339|organism=Nannochloropsis oceanica|type=mRNA|length=796bp
CCTCCTTCCCTCCCACCCTCCCTCCCAGCGACCAAGGAGCAGGAGGAGGT
GGAGTACATCGGGTGTTTCTCGTCCGAGAGCATGTTCCTCGGCAGGGAAT
ACACGGGCGGGGCCGCTGGCGCCAACTTCAACTTGATGCGTCATGTCGCC
TCCCAAAAAGGGAAACGATTTTTTTCCATGGCTCGTGGTGGGCCTGACGG
CCACGGCTACGTCTTCGACGACCTCGACCACCGAGGCCACCCTCACGGTG
ACATGTACGGGGAGGGCTGCGAGCGCACTTGTGCCGATGAGTCTCAGGCG
TTCTGTGGCTGCATGGATGACTTCTGTGCAGGACCTCCGGCGCCAGGAGA
GGAGCACAATCGCCGATGGGCCGTGTATGAGATGAAGGGGACAAGAGGTC
AGCTTAGAGGCAGTCCGCGTAGGCGCTTTCGGTCTCTCGGGTGGTCTAAA
AGGAGGGAAAGAGAAGGGAAAAGGAGACAACCTGGGAAGACGAAAAGGAA
GATTATTGGAATGGTGGAAGTGAGGAGGGAGCAGTTGTCAGGAAAGGAAG
GATGGGAGGGAGAGAGGGAGGGAAGGAGGGAGGAAGGGAGGGAGAGAGGA
TTTCTTCTAGTTTGCCCATTTTTTGATAGCTTGTGCTTTAAGCTTCTCTC
TCATCCCTTCGTTTGCGTTGGAGGTGAGAGATGGTGAGAGAGAGCGGGAG
GGAAAGAGAACATAAAGCTTGAAGGTGAGGCGTAGGTGCACAGAAAGGAG
TGGGAAAGAGAAGGAAGAGAAATTGGAAGAGGAAGCAGGAGGACAA
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protein sequence of jgi.p|Nanoce1779_2|84339

>mRNA_6188-protein ID=mRNA_6188-protein|Name=jgi.p|Nanoce1779_2|84339|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MFLGREYTGGAAGANFNLMRHVASQKGKRFFSMARGGPDGHGYVFDDLDH
RGHPHGDMYGEGCERTCADESQAFCGCMDDFCAGPPAPGEEHNRRWAVYE
MKGTRGQLRGSPRRRFRSLGWSKRREREGKRRQPGKTKRKIIGMVEVRRE
QLSGKEGWEGEREGRREEGRERGFLLVCPFFDSLCFKLLSHPFVCVGGER
W*
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mRNA from alignment at scaffold_14:751088..752515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6188 ID=mRNA_6188|Name=jgi.p|Nanoce1779_2|84339|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at scaffold_14:751088..752515- (Nannochloropsis oceanica)
CCTCCTTCCCTCCCACCCTCCCTCCCAGCGACCAAGGAGCAGGAGGAGGT GGAGTACATCGGGTGTTTCTCGTCCGAGAGCATGTTCCTCGGCAGGGAAT ACACGGGCGGGGCCGCTGGCGCCAACTTCAACTTGATGCGTCATGTCGCC TCCCAAAAAGGGAAACGGTGAGCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCCTCCCTTCCTTCCTGCCTTCCTTTCCGTCTGTTCTGATGT GCGCGGTTGCATTTCTCCTCTTCCCTTCCATGCTTTCAGCATTCATCCTC CCTCCCTTCCTCCCTCCCTCCAGATTTTTTTCCATGGCTCGTGGTGGGCC TGACGGCCACGGCTACGTCTTCGACGACCTCGACCACCGAGGCCACCCTC ACGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAG GGTAGGATACATATGCAAACAGGCAAGAAGGATTTAATATAAATAAGCTC ACAGGCTTAGGTTCCATACCCTCCCTCTCATATCCCTCCCTCCTTGTCAT TTCCCCTATCGTTTTCCTCTTTCTGTAAAATTTATAAATATATCACAACT CATATTAATCTATATACCTACCTATTATATTAATTTACACCCACCTATTA CTAGGGTGACATGTACGGGGAGGGCTGCGAGCGCACTTGTGCCGATGAGT CTCAGGCGTTCTGTGGCTGCATGGATGACTTCTGTGCAGGTACGTCCCCC CCTCCCTCCCTCCCTCCCCTCCTCAATTCGTGATATCCAATTCGCCCTGT AAGATTATTGACATTGAGCGTCCTCCCTCTCTCCCTCTCTCCCTCCCTCC CTCCTTTCCTCCCTCTCTCCCTCCTTCCCTCCCTTCCTACCTCAGGACCT CCGGCGCCAGGAGAGGAGCACAATCGCCGATGGGCCGTGTATGAGATGAA GGGGAAGAAGAGAGGGAAGAAGGGAGGGAAGAGAAAGTCATCGTAAGCTC TACGTGTGGGATGAAGGGAAGGACAAGAGGTCAGCTTAGAGGCAGTCCGC GTAGGCGCTTTCGGTCTCTCGGGTGGTCTAAAAGGAGGGAAAGAGAAGGG AAAAGGAGACAACCTGGGAAGACGAAAAGGAAGATTATTGGAATGGTGGA AGTGAGGAGGGAGCAGTTGTCAGGAAAGGAAGGATGGGAGGGAGAGAGGG AGGGAAGGAGGGAGGAAGGGAGGGAGAGAGGATTTCTTCTAGTTTGCCCA TTTTTTGATAGCTTGTGCTTTAAGCTTCTCTCTCATCCCTTCGTTTGCGT TGGAGGTGAGAGATGGTGAGAGAGAGCGGGAGGGAAAGAGAACATAAAGC TTGAAGGTGAGGCGTAGGTGCACAGAAAGGAGTGGGAAAGAGAAGGAAGA GAAATTGGAAGAGGAAGCAGGAGGACAA
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Coding sequence (CDS) from alignment at scaffold_14:751088..752515-

>mRNA_6188 ID=mRNA_6188|Name=jgi.p|Nanoce1779_2|84339|organism=Nannochloropsis oceanica|type=CDS|length=3030bp|location=Sequence derived from alignment at scaffold_14:751088..752515- (Nannochloropsis oceanica)
GACAAGAGGTCAGCTTAGAGGCAGTCCGCGTAGGCGCTTTCGGTCTCTCG
GGTGGTCTAAAAGGAGGGAAAGAGAAGGGAAAAGGAGACAACCTGGGAAG
ACGAAAAGGAAGATTATTGGAATGGTGGAAGTGAGGAGGGAGCAGTTGTC
AGGAAAGGAAGGATGGGAGGGAGAGAGGGAGGGAAGGAGGGAGGAAGGGA
GGGAGAGAGGATTTCTTCTAGTTTGCCCATTTTTTGATAGCTTGTGCTTT
AAGCTTCTCTCTCATCCCTTCGTTTGCGTTGGAGGTGAGAGATGGTGAGA
CCTCCGGCGCCAGGAGAGGAGCACAATCGCCGATGGGCCGTGTATGAGAT
GAAGGGGGTGACATGTACGGGGAGGGCTGCGAGCGCACTTGTGCCGATGA
GTCTCAGGCGTTCTGTGGCTGCATGGATGACTTCTGTGCAGATTTTTTTC
CATGGCTCGTGGTGGGCCTGACGGCCACGGCTACGTCTTCGACGACCTCG
ACCACCGAGGCCACCCTCACATGTTCCTCGGCAGGGAATACACGGGCGGG
GCCGCTGGCGCCAACTTCAACTTGATGCGTCATGTCGCCTCCCAAAAAGG
GAAACGGACAAGAGGTCAGCTTAGAGGCAGTCCGCGTAGGCGCTTTCGGT
CTCTCGGGTGGTCTAAAAGGAGGGAAAGAGAAGGGAAAAGGAGACAACCT
GGGAAGACGAAAAGGAAGATTATTGGAATGGTGGAAGTGAGGAGGGAGCA
GTTGTCAGGAAAGGAAGGATGGGAGGGAGAGAGGGAGGGAAGGAGGGAGG
AAGGGAGGGAGAGAGGATTTCTTCTAGTTTGCCCATTTTTTGATAGCTTG
TGCTTTAAGCTTCTCTCTCATCCCTTCGTTTGCGTTGGAGGTGAGAGATG
GTGAGACCTCCGGCGCCAGGAGAGGAGCACAATCGCCGATGGGCCGTGTA
TGAGATGAAGGGGGTGACATGTACGGGGAGGGCTGCGAGCGCACTTGTGC
CGATGAGTCTCAGGCGTTCTGTGGCTGCATGGATGACTTCTGTGCAGATT
TTTTTCCATGGCTCGTGGTGGGCCTGACGGCCACGGCTACGTCTTCGACG
ACCTCGACCACCGAGGCCACCCTCACATGTTCCTCGGCAGGGAATACACG
GGCGGGGCCGCTGGCGCCAACTTCAACTTGATGCGTCATGTCGCCTCCCA
AAAAGGGAAACGGACAAGAGGTCAGCTTAGAGGCAGTCCGCGTAGGCGCT
TTCGGTCTCTCGGGTGGTCTAAAAGGAGGGAAAGAGAAGGGAAAAGGAGA
CAACCTGGGAAGACGAAAAGGAAGATTATTGGAATGGTGGAAGTGAGGAG
GGAGCAGTTGTCAGGAAAGGAAGGATGGGAGGGAGAGAGGGAGGGAAGGA
GGGAGGAAGGGAGGGAGAGAGGATTTCTTCTAGTTTGCCCATTTTTTGAT
AGCTTGTGCTTTAAGCTTCTCTCTCATCCCTTCGTTTGCGTTGGAGGTGA
GAGATGGTGAGACCTCCGGCGCCAGGAGAGGAGCACAATCGCCGATGGGC
CGTGTATGAGATGAAGGGGGTGACATGTACGGGGAGGGCTGCGAGCGCAC
TTGTGCCGATGAGTCTCAGGCGTTCTGTGGCTGCATGGATGACTTCTGTG
CAGATTTTTTTCCATGGCTCGTGGTGGGCCTGACGGCCACGGCTACGTCT
TCGACGACCTCGACCACCGAGGCCACCCTCACATGTTCCTCGGCAGGGAA
TACACGGGCGGGGCCGCTGGCGCCAACTTCAACTTGATGCGTCATGTCGC
CTCCCAAAAAGGGAAACGGACAAGAGGTCAGCTTAGAGGCAGTCCGCGTA
GGCGCTTTCGGTCTCTCGGGTGGTCTAAAAGGAGGGAAAGAGAAGGGAAA
AGGAGACAACCTGGGAAGACGAAAAGGAAGATTATTGGAATGGTGGAAGT
GAGGAGGGAGCAGTTGTCAGGAAAGGAAGGATGGGAGGGAGAGAGGGAGG
GAAGGAGGGAGGAAGGGAGGGAGAGAGGATTTCTTCTAGTTTGCCCATTT
TTTGATAGCTTGTGCTTTAAGCTTCTCTCTCATCCCTTCGTTTGCGTTGG
AGGTGAGAGATGGTGAGACCTCCGGCGCCAGGAGAGGAGCACAATCGCCG
ATGGGCCGTGTATGAGATGAAGGGGGTGACATGTACGGGGAGGGCTGCGA
GCGCACTTGTGCCGATGAGTCTCAGGCGTTCTGTGGCTGCATGGATGACT
TCTGTGCAGATTTTTTTCCATGGCTCGTGGTGGGCCTGACGGCCACGGCT
ACGTCTTCGACGACCTCGACCACCGAGGCCACCCTCACATGTTCCTCGGC
AGGGAATACACGGGCGGGGCCGCTGGCGCCAACTTCAACTTGATGCGTCA
TGTCGCCTCCCAAAAAGGGAAACGGACAAGAGGTCAGCTTAGAGGCAGTC
CGCGTAGGCGCTTTCGGTCTCTCGGGTGGTCTAAAAGGAGGGAAAGAGAA
GGGAAAAGGAGACAACCTGGGAAGACGAAAAGGAAGATTATTGGAATGGT
GGAAGTGAGGAGGGAGCAGTTGTCAGGAAAGGAAGGATGGGAGGGAGAGA
GGGAGGGAAGGAGGGAGGAAGGGAGGGAGAGAGGATTTCTTCTAGTTTGC
CCATTTTTTGATAGCTTGTGCTTTAAGCTTCTCTCTCATCCCTTCGTTTG
CGTTGGAGGTGAGAGATGGTGAGACCTCCGGCGCCAGGAGAGGAGCACAA
TCGCCGATGGGCCGTGTATGAGATGAAGGGGGTGACATGTACGGGGAGGG
CTGCGAGCGCACTTGTGCCGATGAGTCTCAGGCGTTCTGTGGCTGCATGG
ATGACTTCTGTGCAGATTTTTTTCCATGGCTCGTGGTGGGCCTGACGGCC
ACGGCTACGTCTTCGACGACCTCGACCACCGAGGCCACCCTCACATGTTC
CTCGGCAGGGAATACACGGGCGGGGCCGCTGGCGCCAACTTCAACTTGAT
GCGTCATGTCGCCTCCCAAAAAGGGAAACG
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Synonyms
Publications