jgi.p|Nanoce1779_2|556704, mRNA_5921 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556704
Unique NamemRNA_5921
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1031
Alignment locationscaffold_14:68711..69741 +

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Properties
Property NameValue
TranscriptId556790
TrackFilteredModels2
ProteinId556704
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:68711..69741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556704gene_5921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556704mRNA_5921-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5921CDS_5921Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5921 ID=mRNA_5921|Name=jgi.p|Nanoce1779_2|556704|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
ACAGTGCGATAAGTAGCCATAAATTTCCACGAGAGCGTAAGTATAAGATT
ATGTCACCTGCTGCTCAACACAAGCTCGTCTCCCCATTTTCCTCCCTCGA
CCCCTCCGCCCTGCCCCCTCCCCTCATGACTGCCCAGGGCGTGCCCTTTC
ACCCCATCTGGCAGCTTATCCCGGCCCTGTCGCCCTTCTACACATCCTAT
GAGAAGCATTTTGATGCCACCGCCTCCTTTATTTTCCTCTATCGCCACAC
CTGGGTCCCTCTCCTGGCCACTGCCCTTTACTTCGCCTTTTGCTACTACG
GCCCGAAAGCGATGCGTCACCGCAAGGCTTTTGACCTCAAGACCATTCTC
TGCCTTTGGAATCTGTCGTTGTCACTCATAAGTTTTGCGGGCGCCGTCCG
TGTGGGTACCCATCTCTTGTACCTGCTGTCCCCGTGGGGCGGATTTTCCT
TTCGAGACACGATCTGCGAGTCCCCTGAAGCGACTTACGCCGACAACGCC
ACGGGCCTTTGGTGCGTCGTCTTCACTGTTTCCAAGCTCCTCGAATTAGT
CGACACTATATTTGTGGTGTTGCGGAAGAAGCCTCTCATTTTCCTGCATT
GGTACCACCATGCGACTGTCCTTTTGTGCTCATGGTTCGGGCATGTCACG
TTCACGCCAGCCCTTTATTTCATGGCAATTAATTACTCGATTCACGGCGT
GATGTACTTGTACTTCTTTCTAATGGCAATTAAAAAAGTCCCACAGTGGT
TCAATCCTATGTGGCTGACGGTAGCGCAGATCAGCCAAATGTTTGTGGGC
ATTTGGGTGATTGTCATGAGTTGTTACTATAAGTATTTCGAGGGCGCTCA
GGGAGAAGGAATGGGGAAGGGATGCGCGATTGACGGCCGAATGATTGTGG
CGATTTGTTTAATGTATTCGACGTACCTAGTATTGTTCGTCAAGTTTTTT
GTACAACGATATGCGGGCCAACAAAAGCGCAAGGGAGCGAGGGAGGTGGC
GGTGGTGGGGAAGGAGGATAAGGCGACATGA
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protein sequence of jgi.p|Nanoce1779_2|556704

>mRNA_5921-protein ID=mRNA_5921-protein|Name=jgi.p|Nanoce1779_2|556704|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSPAAQHKLVSPFSSLDPSALPPPLMTAQGVPFHPIWQLIPALSPFYTSY
EKHFDATASFIFLYRHTWVPLLATALYFAFCYYGPKAMRHRKAFDLKTIL
CLWNLSLSLISFAGAVRVGTHLLYLLSPWGGFSFRDTICESPEATYADNA
TGLWCVVFTVSKLLELVDTIFVVLRKKPLIFLHWYHHATVLLCSWFGHVT
FTPALYFMAINYSIHGVMYLYFFLMAIKKVPQWFNPMWLTVAQISQMFVG
IWVIVMSCYYKYFEGAQGEGMGKGCAIDGRMIVAICLMYSTYLVLFVKFF
VQRYAGQQKRKGAREVAVVGKEDKAT*
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mRNA from alignment at scaffold_14:68711..69741+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5921 ID=mRNA_5921|Name=jgi.p|Nanoce1779_2|556704|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp|location=Sequence derived from alignment at scaffold_14:68711..69741+ (Nannochloropsis oceanica)
ACAGTGCGATAAGTAGCCATAAATTTCCACGAGAGCGTAAGTATAAGATT
ATGTCACCTGCTGCTCAACACAAGCTCGTCTCCCCATTTTCCTCCCTCGA
CCCCTCCGCCCTGCCCCCTCCCCTCATGACTGCCCAGGGCGTGCCCTTTC
ACCCCATCTGGCAGCTTATCCCGGCCCTGTCGCCCTTCTACACATCCTAT
GAGAAGCATTTTGATGCCACCGCCTCCTTTATTTTCCTCTATCGCCACAC
CTGGGTCCCTCTCCTGGCCACTGCCCTTTACTTCGCCTTTTGCTACTACG
GCCCGAAAGCGATGCGTCACCGCAAGGCTTTTGACCTCAAGACCATTCTC
TGCCTTTGGAATCTGTCGTTGTCACTCATAAGTTTTGCGGGCGCCGTCCG
TGTGGGTACCCATCTCTTGTACCTGCTGTCCCCGTGGGGCGGATTTTCCT
TTCGAGACACGATCTGCGAGTCCCCTGAAGCGACTTACGCCGACAACGCC
ACGGGCCTTTGGTGCGTCGTCTTCACTGTTTCCAAGCTCCTCGAATTAGT
CGACACTATATTTGTGGTGTTGCGGAAGAAGCCTCTCATTTTCCTGCATT
GGTACCACCATGCGACTGTCCTTTTGTGCTCATGGTTCGGGCATGTCACG
TTCACGCCAGCCCTTTATTTCATGGCAATTAATTACTCGATTCACGGCGT
GATGTACTTGTACTTCTTTCTAATGGCAATTAAAAAAGTCCCACAGTGGT
TCAATCCTATGTGGCTGACGGTAGCGCAGATCAGCCAAATGTTTGTGGGC
ATTTGGGTGATTGTCATGAGTTGTTACTATAAGTATTTCGAGGGCGCTCA
GGGAGAAGGAATGGGGAAGGGATGCGCGATTGACGGCCGAATGATTGTGG
CGATTTGTTTAATGTATTCGACGTACCTAGTATTGTTCGTCAAGTTTTTT
GTACAACGATATGCGGGCCAACAAAAGCGCAAGGGAGCGAGGGAGGTGGC
GGTGGTGGGGAAGGAGGATAAGGCGACATGA
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Coding sequence (CDS) from alignment at scaffold_14:68711..69741+

>mRNA_5921 ID=mRNA_5921|Name=jgi.p|Nanoce1779_2|556704|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_14:68711..69741+ (Nannochloropsis oceanica)
ATGTCACCTGCTGCTCAACACAAGCTCGTCTCCCCATTTTCCTCCCTCGA
CCCCTCCGCCCTGCCCCCTCCCCTCATGACTGCCCAGGGCGTGCCCTTTC
ACCCCATCTGGCAGCTTATCCCGGCCCTGTCGCCCTTCTACACATCCTAT
GAGAAGCATTTTGATGCCACCGCCTCCTTTATTTTCCTCTATCGCCACAC
CTGGGTCCCTCTCCTGGCCACTGCCCTTTACTTCGCCTTTTGCTACTACG
GCCCGAAAGCGATGCGTCACCGCAAGGCTTTTGACCTCAAGACCATTCTC
TGCCTTTGGAATCTGTCGTTGTCACTCATAAGTTTTGCGGGCGCCGTCCG
TGTGGGTACCCATCTCTTGTACCTGCTGTCCCCGTGGGGCGGATTTTCCT
TTCGAGACACGATCTGCGAGTCCCCTGAAGCGACTTACGCCGACAACGCC
ACGGGCCTTTGGTGCGTCGTCTTCACTGTTTCCAAGCTCCTCGAATTAGT
CGACACTATATTTGTGGTGTTGCGGAAGAAGCCTCTCATTTTCCTGCATT
GGTACCACCATGCGACTGTCCTTTTGTGCTCATGGTTCGGGCATGTCACG
TTCACGCCAGCCCTTTATTTCATGGCAATTAATTACTCGATTCACGGCGT
GATGTACTTGTACTTCTTTCTAATGGCAATTAAAAAAGTCCCACAGTGGT
TCAATCCTATGTGGCTGACGGTAGCGCAGATCAGCCAAATGTTTGTGGGC
ATTTGGGTGATTGTCATGAGTTGTTACTATAAGTATTTCGAGGGCGCTCA
GGGAGAAGGAATGGGGAAGGGATGCGCGATTGACGGCCGAATGATTGTGG
CGATTTGTTTAATGTATTCGACGTACCTAGTATTGTTCGTCAAGTTTTTT
GTACAACGATATGCGGGCCAACAAAAGCGCAAGGGAGCGAGGGAGGTGGC
GGTGGTGGGGAAGGAGGATAAGGCGACATGA
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Synonyms
Publications