jgi.p|Nanoce1779_2|566834, mRNA_6015 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566834
Unique NamemRNA_6015
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_14:314915..315436 +

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Properties
Property NameValue
TranscriptId566920
TrackFilteredModels2
ProteinId566834
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:314915..315436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566834gene_6015Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566834mRNA_6015-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6015CDS_6015Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6015 ID=mRNA_6015|Name=jgi.p|Nanoce1779_2|566834|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
ATGTCGGGCTTGGTGGTATCCACACGAGCATTACCATTGATAGAGGCGTT
GGCGCAAGTAGAGCGACAAGCCACGCTGCTGGACGCAGGGGCGATTGAAA
CACTGCGACAGCGCTTGGTGCTCCTCAAATCTGAATGGGATAGCTTTAAG
AAAGAGAGGCTCAAGCTTGCGAATACTCTGGATAGGGAAGCAGGATCACA
TTTTCGGAGGGTGGAGAGTGTGTGGGAGATGATGGGACGGTTGGCGCCGG
TGGCGGGCGATTTGCCTCTGTTGGTGAGCCGGTTGAAGGTGTTACAGGAG
CTGCATGGTGAGAGTTTGACGTTCGCAAGACGGATGGGGGAGTTGGAGGA
GGGACAAGGGGTACTGAGAGAGTTGCTGGCGGGGACGAAGAAGAGCGTGG
AGGAGGTGAAGAAGAGTTTGAGGGAGAATGTGGGGGAGATGGAGAGGAAC
GTGAATGAGGTGGATAAGAGGTTACGAAGGCTGATGCTGCTGGAGGGCGA
GGAGGGGGGAGGGAAGGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|566834

>mRNA_6015-protein ID=mRNA_6015-protein|Name=jgi.p|Nanoce1779_2|566834|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSGLVVSTRALPLIEALAQVERQATLLDAGAIETLRQRLVLLKSEWDSFK
KERLKLANTLDREAGSHFRRVESVWEMMGRLAPVAGDLPLLVSRLKVLQE
LHGESLTFARRMGELEEGQGVLRELLAGTKKSVEEVKKSLRENVGEMERN
VNEVDKRLRRLMLLEGEEGGGKE*
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mRNA from alignment at scaffold_14:314915..315436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6015 ID=mRNA_6015|Name=jgi.p|Nanoce1779_2|566834|organism=Nannochloropsis oceanica|type=mRNA|length=522bp|location=Sequence derived from alignment at scaffold_14:314915..315436+ (Nannochloropsis oceanica)
ATGTCGGGCTTGGTGGTATCCACACGAGCATTACCATTGATAGAGGCGTT
GGCGCAAGTAGAGCGACAAGCCACGCTGCTGGACGCAGGGGCGATTGAAA
CACTGCGACAGCGCTTGGTGCTCCTCAAATCTGAATGGGATAGCTTTAAG
AAAGAGAGGCTCAAGCTTGCGAATACTCTGGATAGGGAAGCAGGATCACA
TTTTCGGAGGGTGGAGAGTGTGTGGGAGATGATGGGACGGTTGGCGCCGG
TGGCGGGCGATTTGCCTCTGTTGGTGAGCCGGTTGAAGGTGTTACAGGAG
CTGCATGGTGAGAGTTTGACGTTCGCAAGACGGATGGGGGAGTTGGAGGA
GGGACAAGGGGTACTGAGAGAGTTGCTGGCGGGGACGAAGAAGAGCGTGG
AGGAGGTGAAGAAGAGTTTGAGGGAGAATGTGGGGGAGATGGAGAGGAAC
GTGAATGAGGTGGATAAGAGGTTACGAAGGCTGATGCTGCTGGAGGGCGA
GGAGGGGGGAGGGAAGGAGTGA
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Coding sequence (CDS) from alignment at scaffold_14:314915..315436+

>mRNA_6015 ID=mRNA_6015|Name=jgi.p|Nanoce1779_2|566834|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_14:314915..315436+ (Nannochloropsis oceanica)
ATGTCGGGCTTGGTGGTATCCACACGAGCATTACCATTGATAGAGGCGTT
GGCGCAAGTAGAGCGACAAGCCACGCTGCTGGACGCAGGGGCGATTGAAA
CACTGCGACAGCGCTTGGTGCTCCTCAAATCTGAATGGGATAGCTTTAAG
AAAGAGAGGCTCAAGCTTGCGAATACTCTGGATAGGGAAGCAGGATCACA
TTTTCGGAGGGTGGAGAGTGTGTGGGAGATGATGGGACGGTTGGCGCCGG
TGGCGGGCGATTTGCCTCTGTTGGTGAGCCGGTTGAAGGTGTTACAGGAG
CTGCATGGTGAGAGTTTGACGTTCGCAAGACGGATGGGGGAGTTGGAGGA
GGGACAAGGGGTACTGAGAGAGTTGCTGGCGGGGACGAAGAAGAGCGTGG
AGGAGGTGAAGAAGAGTTTGAGGGAGAATGTGGGGGAGATGGAGAGGAAC
GTGAATGAGGTGGATAAGAGGTTACGAAGGCTGATGCTGCTGGAGGGCGA
GGAGGGGGGAGGGAAGGAGTGA
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Synonyms
Publications