jgi.p|Nanoce1779_2|595256, mRNA_7007 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595256
Unique NamemRNA_7007
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1155
Alignment locationscaffold_16:29969..32416 -

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Properties
Property NameValue
TranscriptId595342
TrackFilteredModels2
ProteinId595256
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:29969..32416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595256gene_7007Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595256mRNA_7007-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7007CDS_7007Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7007 ID=mRNA_7007|Name=jgi.p|Nanoce1779_2|595256|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
GGGAAATGAAATGCCAACGCGGGTAAGAAACCAAAAAAAGGAAGGAAAAG
TACAATACAAGAAGGGAAGGAAAGAGGAAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGAAAATAACGGGCGTCTTTCTTCATGCGCAAGCCC
GTGCTCTTCATTCACCAAGCACAATTTCGCATCCTGTGCGTTTGAATTTT
CAAAAAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGGGGCGA
CTTCTGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCACGGCG
CGCGACTTGGACGGTGACGAGGTCGACAATTTCGATGAGACCATCCTGCC
CTCGGACTTCGAGGAAGCCGGCCAGATACTGGATGATGAGATCCACGCCA
TACTGGTCGCCGCCCTTCCCGTCGGTGTCCGTCTCACTGCCATCTTCGAC
TCCTGCCACTCCGGGAGCGCCCTGGATCTCCCCTGGTCCTACAAGGTTGA
CGGCTCCCTCGACGTGGTCATTATCGATAATCGCAAGGCGGCATTGGAGT
CTGCTTTCAACGCTGGGATGGCCTACTTCCAGGGAGACAAACAGCGGGCC
ATGGGGCACGGCATGGACGCCGTGAAGCACCTGCTGAGCGCGGGCGGGAA
CGAGGAAGCGAGGAAAAAAGCCGAGAAAGAGAGAACAAACACCGATGCTG
ACGTCATCCAGTTCTCCGGGTGCCGTGATGATCAGACGAGCGCGGACGCC
AGGATCGATGGCCAACCCACGGGCGCCGCCTCCTTCGCCCTCTTGAGCTG
CCTCCGAGCTAATCCCAATCAGAATTACACCGAGCTCCTCCAGAACATGC
GCAAGACCCTGGCTGGCAAGTACACGCAGGTGCCCCAGCTTTCCACCGCC
CATCCCATTGACCTGAACGTGGCCTTCAACTTGTGATGCAAAGAGAGGAC
GGGAAGGAGAGCGGGGGGGGACAAGGTGAGAGGGAGAGCGGACAGATGGA
TTCTTCCGCCTCGAAACCTTGTGTGAAAAAAAATTGAACAGGGACAAGCA
AAGCAGATTGGTATGCTTGGTGTGGGTGCTATAGATGATGAAATAGTACG
ACACACATTCAAAAACGAATCACGAATTTAAAAAAAAGACAGAGGTGATC
CACTA
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protein sequence of jgi.p|Nanoce1779_2|595256

>mRNA_7007-protein ID=mRNA_7007-protein|Name=jgi.p|Nanoce1779_2|595256|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MAYFQGDKQRAMGHGMDAVKHLLSAGGNEEARKKAEKERTNTDADVIQFS
GCRDDQTSADARIDGQPTGAASFALLSCLRANPNQNYTELLQNMRKTLAG
KYTQVPQLSTAHPIDLNVAFNL*
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mRNA from alignment at scaffold_16:29969..32416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7007 ID=mRNA_7007|Name=jgi.p|Nanoce1779_2|595256|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at scaffold_16:29969..32416- (Nannochloropsis oceanica)
GGGAAATGAAATGCCAACGCGGGTAAGAAACCAAAAAAAGGAAGGAAAAG
TACAATACAAGAAGGGAAGGAAAGAGGAAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGAAAATAACGGGCGTCTTTCTTCATGCGCAAGCCC
GTGCTCTTCATTCACCAAGCACAATTTCGCATCCTGTGCGTTTGAATTTT
CAAAAAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGGGGCGA
CTTCTGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCACGGCG
CGCGACTTGGGTGGGTAGCCATGTCAAGAATAGTAGTAGCAGCAGTAGCA
GCATTAGGAGTAGTAGCTGTTCTTTTTCTTGTTCTTGTTCTTCTTGTTGT
TGTGGGAGGAGGAAAAGGAGAGGGAAGGGCAACAGCTGCTGCTGCTTTTC
ATTGCTCCCTCCTTCCTTTCCCATTTCTCTGTATTTCTCTGTTTCAATGA
TATCAATTGTTTGGCACCGACCTCGGCGCTTCCTCTCGTAGAGTCCCATC
ATGAAACACGCACGTGACCCTCCCTCCCTCTCTCCCTCCTCCCCCTCCCT
CCCCACTCCCACCATGCAAAGTACACGTGACACTCTTCCGAACCGTCCAA
CCTTCTTTCCCTCCTTCCCTCCCTCTTTCCCTCCAGACGGTGACGAGGTC
GACAATTTCGATGAGACCATCCTGCCCTCGGACTTCGAGGAAGCCGGCCA
GATACTGGATGATGAGATCCACGTAGGGCGGGAGGGAGGGAGGGAGAGAG
GGAGGGAGGGGAGAATTACACCATCATTCAGTGCTCAGTGCACATAGACC
GCAATTCAATCAACCAGCATAATCAATCGACCTTCCTCCCTCCCCATCCT
GCACTCCTTCAATTCATGAATTGACAGGCCATACTGGTCGCCGCCCTTCC
CGTCGGTGTCCGTCTCACTGCCATCTTCGACTCCTGCCACTCCGGGAGCG
CCCTGGATGTGAGTGTCTTCCCTCCTCTCCTCCCTCCCTCCCTCCCTCCC
TTCCTTCCTTCCTTCCTTTACTCCTTCCTTCCTCCATCCTTTGGCGCGGC
CTTCTGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGTCCAGCTCC
CCTGGTCCTACAAGGTTGACGGCTCCCTCGACGTGGTCATTATCGATAAT
CGCAAGGCGGCATTGGAGTCTGGTGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGGACTAAAAGGGGAAGG
AAGGAGGACACGAAAAGAAGATTTACTCCATAGTGGCATGGAAGGAGGGA
GGGAAGGAGGGGAGGGAGGAATGTAAGGACTCAGCTCGGTAAACCAATCA
TTACCGTACAGCTTTCAACGCTGGGATGGCCTACTTCCAGGGAGACAAAC
AGCGGGCCATGGGGTAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGGGGGAGGGGGAAAAGAATGCACGCTTCTGTATATGCCTTTCTTC
TTCTCAGTCCGATCGACACTCCCTTCCTCCCTCCTTCGACCCCTCAGGCA
CGGCATGGACGCCGTGAAGCACCTGCTGAGCGCGGGCGGGAACGAGGAAG
CGAGGAAAAAAGCCGAGAAAGAGAGAACAAACACCGATGCTGACGTCATC
CAGTTCTCCGGGTGCCGTGATGATCAGACGAGCGCGGACGCCAGGATCGA
TGGTAGGGAGGGAGCAAGGGAAGGAGGAGAGGAGAGGACAGAACGGTGTA
GTGTGTGCGCGTGTGAAGAGACTACAGGGTTTGATGAAGCCCCAAACTGA
TGCTCCTTCCCCCTCCCTCCCTCCCTCAATTCCCGAAGGCCAACCCACGG
GCGCCGCCTCCTTCGCCCTCTTGAGCTGCCTCCGAGCTAATCCCAATCAG
AATTACACCGAGCTCCTCCAGAACATGCGCAAGACCCTGGCTGGTACTTT
GAAAACAAGCCCACCCTCCCTTCCTCCCTCTCTCCCTCCCTCTCTCCCTT
AAAGTCCTTCGCGCAGCATTTGTGTCTCTAATAGCTCCTGCATCGCTCAT
CAAACTTTCATATCCTCCCTTCCTCCCTTCGTTCCTTCCCTCCCTCCCTT
TCCCTTAGGCAAGTACACGCAGGTGCCCCAGCTTTCCACCGCCCATCCCA
TTGACCTGAACGTGGCCTTCAACTTGTGATGCAAAGAGAGGACGGGAAGG
AGAGCGGGGGGGGACAAGGTGAGAGGGAGAGCGGACAGATGGATTCTTCC
GCCTCGAAACCTTGTGTGAAAAAAAATTGAACAGGGACAAGCAAAGCAGA
TTGGTATGCTTGGTGTGGGTGCTATAGATGATGAAATAGTACGACACACA
TTCAAAAACGAATCACGAATTTAAAAAAAAGACAGAGGTGATCCACTA
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Coding sequence (CDS) from alignment at scaffold_16:29969..32416-

>mRNA_7007 ID=mRNA_7007|Name=jgi.p|Nanoce1779_2|595256|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_16:29969..32416- (Nannochloropsis oceanica)
GCAAGTACACGCAGGTGCCCCAGCTTTCCACCGCCCATCCCATTGACCTG
AACGTGGCCTTCAACTTGTGAGCCAACCCACGGGCGCCGCCTCCTTCGCC
CTCTTGAGCTGCCTCCGAGCTAATCCCAATCAGAATTACACCGAGCTCCT
CCAGAACATGCGCAAGACCCTGGCTGGCACGGCATGGACGCCGTGAAGCA
CCTGCTGAGCGCGGGCGGGAACGAGGAAGCGAGGAAAAAAGCCGAGAAAG
AGAGAACAAACACCGATGCTGACGTCATCCAGTTCTCCGGGTGCCGTGAT
GATCAGACGAGCGCGGACGCCAGGATCGATGATGGCCTACTTCCAGGGAG
ACAAACAGCGGGCCATGGGGCAAGTACACGCAGGTGCCCCAGCTTTCCAC
CGCCCATCCCATTGACCTGAACGTGGCCTTCAACTTGTGAGCCAACCCAC
GGGCGCCGCCTCCTTCGCCCTCTTGAGCTGCCTCCGAGCTAATCCCAATC
AGAATTACACCGAGCTCCTCCAGAACATGCGCAAGACCCTGGCTGGCACG
GCATGGACGCCGTGAAGCACCTGCTGAGCGCGGGCGGGAACGAGGAAGCG
AGGAAAAAAGCCGAGAAAGAGAGAACAAACACCGATGCTGACGTCATCCA
GTTCTCCGGGTGCCGTGATGATCAGACGAGCGCGGACGCCAGGATCGATG
ATGGCCTACTTCCAGGGAGACAAACAGCGGGCCATGGGGCAAGTACACGC
AGGTGCCCCAGCTTTCCACCGCCCATCCCATTGACCTGAACGTGGCCTTC
AACTTGTGAGCCAACCCACGGGCGCCGCCTCCTTCGCCCTCTTGAGCTGC
CTCCGAGCTAATCCCAATCAGAATTACACCGAGCTCCTCCAGAACATGCG
CAAGACCCTGGCTGGCACGGCATGGACGCCGTGAAGCACCTGCTGAGCGC
GGGCGGGAACGAGGAAGCGAGGAAAAAAGCCGAGAAAGAGAGAACAAACA
CCGATGCTGACGTCATCCAGTTCTCCGGGTGCCGTGATGATCAGACGAGC
GCGGACGCCAGGATCGATGATGGCCTACTTCCAGGGAGACAAACAGCGGG
CCATGGGGCAAGTACACGCAGGTGCCCCAGCTTTCCACCGCCCATCCCAT
TGACCTGAACGTGGCCTTCAACTTGTGAGCCAACCCACGGGCGCCGCCTC
CTTCGCCCTCTTGAGCTGCCTCCGAGCTAATCCCAATCAGAATTACACCG
AGCTCCTCCAGAACATGCGCAAGACCCTGGCTGGCACGGCATGGACGCCG
TGAAGCACCTGCTGAGCGCGGGCGGGAACGAGGAAGCGAGGAAAAAAGCC
GAGAAAGAGAGAACAAACACCGATGCTGACGTCATCCAGTTCTCCGGGTG
CCGTGATGATCAGACGAGCGCGGACGCCAGGATCGATGATGGCCTACTTC
CAGGGAGACAAACAGCGGGCCATGGG
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Synonyms
Publications