jgi.p|Nanoce1779_2|596132, mRNA_7227 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596132
Unique NamemRNA_7227
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length931
Alignment locationscaffold_16:641284..642727 -

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Properties
Property NameValue
TranscriptId596218
TrackFilteredModels2
ProteinId596132
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:641284..642727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596132gene_7227Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596132mRNA_7227-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7227CDS_7227Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7227 ID=mRNA_7227|Name=jgi.p|Nanoce1779_2|596132|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
AAAAAAGCTCGTCGGGCAGGGGGGGCAGGGGGAGGGAGGGGGGGAGGGAA
AGGAGGAGGAAGTGGAGGAGCCAAACGGAACAGCGGCATGGGTGCGAAAG
CAGCAGCAGCAGCAGCCGCAGGAGGGGGAGGAGAGGCGGCTGCCCTCCTT
GCTCGCATCGAAGCGTTGGAAAAACAACTTCAGGCACAAGGAGGAGGAGG
CGGCGGAGTGGGAGGGGGGGTGGCTGCGGGAGGAATGAGCGTGCCAATGG
CGGCAGCAGCAGCAGCAGCAGCTCCGAGCTTCGATCCCACGCAGCCCCTG
ACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCTCCCCCC
TGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGGCAAAGTGTCCGAACC
TGCCCTTGGACGAGGACGGCGAGGTGGAGGTAGACATGGAGCGTCTCGAC
ACACCCGTGCTACGAGACTTGCAGCGGTAGGAAGGGAGGGAGGAACAGAG
GGGGGGAAGGGAGGGAAGGAGGGGAGGAGGGACCGAGGGACGGAGGGAGG
GAGAAATCGGTCATGTTCAAAGTTATCTTAATAATATCTATCTAATATAA
TATCATATAATATCAATATCTATCTAATATCTTCATCACTTTCTCCCTCG
CTCCTTCTCTTCTTCCCCAACCGTAGTTTTGTCGCCTCGTGTGTGTCTTC
CTCGACGGGAGGACGAGGACGGGGACGAGGGGGGGGAAGGGGCGCCAGAG
GCGGCGGTCGTGGTTCACGGGGGGCAGGACGAGGACGAGGCGGTGTGGGA
GGGGGAGGAGGAGGAGGAGGAGGGATGGGGGGAAGGAGCACGACGATGGC
CCAAGCGACCATGTCTACGTTGGCCTACTCAGACGACGATTCGGACTCCG
GGGGCTCTCTAGGATAGGGAAAGAGAGTTTT
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protein sequence of jgi.p|Nanoce1779_2|596132

>mRNA_7227-protein ID=mRNA_7227-protein|Name=jgi.p|Nanoce1779_2|596132|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MGAKAAAAAAAGGGGEAAALLARIEALEKQLQAQGGGGGGVGGGVAAGGM
SVPMAAAAAAAAPSFDPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQA
KCPNLPLDEDGEVEVDMERLDTPVLRDLQR*
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mRNA from alignment at scaffold_16:641284..642727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7227 ID=mRNA_7227|Name=jgi.p|Nanoce1779_2|596132|organism=Nannochloropsis oceanica|type=mRNA|length=1444bp|location=Sequence derived from alignment at scaffold_16:641284..642727- (Nannochloropsis oceanica)
AAAAAAGCTCGTCGGGCAGGGGGGGCAGGGGGAGGGAGGGGGGGAGGGAA
AGGAGGAGGAAGTGGAGGAGCCAAACGGAACAGCGGCATGGGTGCGAAAG
CAGCAGCAGCAGCAGCCGCAGGAGGGGGAGGAGAGGCGGCTGCCCTCCTT
GCTCGCATCGAAGCGTTGGAAAAACAACTTCAGGCACAAGGAGGAGGAGG
CGGCGGAGTGGGAGGGGGGGTGGCTGCGGGAGGAATGAGCGTGCCAATGG
CGGCAGCAGCAGCAGCAGCAGCTCCGAGGTGGGGAGGGAGGGAGGGAGGG
AGGGAGGGAAGGGGAAGAGTCTTGTCGTAAGATACCATTACCTCACCTCT
GTAAGTCAATAAAGCGCCCCAGAGTTTCCACTCACCCTCCATCCCTCCCT
CCCTCCCCTCCTCCCTCCCCCCCTTCCTCAGCTTCGATCCCACGCAGCCC
CTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCTCCC
CCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGGTACGACAAACAC
CTTTCTTCCCTCCCCTCATCCGTGCCCTTCCCTCCCTCTCTCAAACGCCC
GCCTTCCCGGGAGAAAATAGATATTTAAGCCTCGTCCCTCCCCTGACTCC
CTCCCTCCCCTCCCTCCCTCATTCCCTCCCTCATTCCCTCCCTCCCTCCC
TCCCTCCCTCTCTCCCCCCCTCCCGCGTTCCCTACCTCCCTCCCTCCCTC
CCTCCCTTGTAGGCAAAGTGTCCGAACCTGCCCTTGGACGAGGACGGCGA
GGTGGAGGTAGACATGGAGCGTCTCGACACACCCGTGCTACGAGACTTGC
AGCGGTAGGAAGGGAGGGAGGAACAGAGGGGGGGAAGGGAGGGAAGGAGG
GGAGGAGGGACCGAGGGACGGAGGGAGGGAGAAATCGGTCATGTTCAAAG
TTATCTTAATAATATCTATCTAATATAATATCATATAATATCAATATCTA
TCTAATATCTTCATCACTTTCTCCCTCGCTCCTTCTCTTCTTCCCCAACC
GTAGTTTTGTCGCCTCGTGTGTGTCTTCCTCGACGGGAGGACGAGGACGG
GGACGAGGGGGGGGAAGGGGCGCCAGAGGCGGCGGTCGTGGTTCACGGGG
GGCAGGACGAGGACGAGGCGGTGTGGGAGGGGGAGGAGGAGGAGGAGGAG
GGATGGGGGGAAGGAGCACGACGATGGCCCAAGTACGTTTAAACTCCCTC
CCTCCCTCCCTCCCTCCCTTCCTTCCTGCATTCCATACTCACCCTCCTTC
TCTGAAATCTCAGTAGGCTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCCCCTCCCTGACAGGCGACCATGTCTACGTTGGCCTACTCAGACGAC
GATTCGGACTCCGGGGGCTCTCTAGGATAGGGAAAGAGAGTTTT
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Coding sequence (CDS) from alignment at scaffold_16:641284..642727-

>mRNA_7227 ID=mRNA_7227|Name=jgi.p|Nanoce1779_2|596132|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_16:641284..642727- (Nannochloropsis oceanica)
GCAAAGTGTCCGAACCTGCCCTTGGACGAGGACGGCGAGGTGGAGGTAGA
CATGGAGCGTCTCGACACACCCGTGCTACGAGACTTGCAGCGGTAGCTTC
GATCCCACGCAGCCCCTGACCCACGACGAGAAGAGGAATCTCCGCACCTC
CATCGAGCGCCTCCCCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCC
AGATGGGTGCGAAAGCAGCAGCAGCAGCAGCCGCAGGAGGGGGAGGAGAG
GCGGCTGCCCTCCTTGCTCGCATCGAAGCGTTGGAAAAACAACTTCAGGC
ACAAGGAGGAGGAGGCGGCGGAGTGGGAGGGGGGGTGGCTGCGGGAGGAA
TGAGCGTGCCAATGGCGGCAGCAGCAGCAGCAGCAGCTCCGAGGCAAAGT
GTCCGAACCTGCCCTTGGACGAGGACGGCGAGGTGGAGGTAGACATGGAG
CGTCTCGACACACCCGTGCTACGAGACTTGCAGCGGTAGCTTCGATCCCA
CGCAGCCCCTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAG
CGCCTCCCCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGATGGG
TGCGAAAGCAGCAGCAGCAGCAGCCGCAGGAGGGGGAGGAGAGGCGGCTG
CCCTCCTTGCTCGCATCGAAGCGTTGGAAAAACAACTTCAGGCACAAGGA
GGAGGAGGCGGCGGAGTGGGAGGGGGGGTGGCTGCGGGAGGAATGAGCGT
GCCAATGGCGGCAGCAGCAGCAGCAGCAGCTCCGAGGCAAAGTGTCCGAA
CCTGCCCTTGGACGAGGACGGCGAGGTGGAGGTAGACATGGAGCGTCTCG
ACACACCCGTGCTACGAGACTTGCAGCGGTAGCTTCGATCCCACGCAGCC
CCTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCTCC
CCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGATGGGTGCGAAA
GCAGCAGCAGCAGCAGCCGCAGGAGGGGGAGGAGAGGCGGCTGCCCTCCT
TGCTCGCATCGAAGCGTTGGAAAAACAACTTCAGGCACAAGGAGGAGGAG
GCGGCGGAGTGGGAGGGGGGGTGGCTGCGGGAGGAATGAGCGTGCCAATG
GCGGCAGCAGCAGCAGCAGCAGCTCCGAG
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Synonyms
Publications