Properties
Property Name | Value |
TranscriptId | 114858 |
Track | FilteredModels2 |
ProteinId | 114772 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_17 | supercontig | scaffold_17:227350..229638 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6838 ID=mRNA_6838|Name=jgi.p|Nanoce1779_2|114772|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp CAGGGCACGCTCTGTGCAACGCCCGCGATTCCGACCTTATCTAGTCTGCC TCAGCTCACCCCTGTCCCTCTTCCCCCCTCCAATTAACAGGCTAGGCAAG GGCGATGGTGTGCCTCCCACCCCTACTCGATAATCTGCGGGGCTTTATCT GGTCTATAGTCCTCTCTACTTCTTTCCTTATATTGGCCGGGCTGGTGCTG GGTGTCTGGCTTCTGTGTGAAATTGTCTTTTACTTCTACCTCCGATACAT CGTCCTGCCGGAGCTGAATCGATTAACAACACCGGAGGACAGCGTCCATA CGCCTTGGGATGAGTTTCATAAGATTATTGATGTCGTCAGTCAGCTCAAG GGTTCCTACGCATTCGAGCAGTTTTTCTCCGGCTGGTTCCTAGGCTCGCC GATTCAAGACATACGCCGAGGAAATGTCAGAGAAATGCTTGCTTGGGCCC TCTACAGCACAGCGCAATCAGCCTTGACAGTCAGGCAGAAGGCTTGTGTT GAAGATGTGCTATACTGGCTTAAAATGCGCTTCCAGATCGACTGTCCCGA AGGCTACAACCCTAAGGTCCGGCCGATGCTGCTAACGCTGGACCCAGTCA AATACAATCATCGCCCCCTTTTGTTTTACGCTGTCTTGACTGTGATTCAA GTTTTGGGCCATGGGGTGTTAATGCTGTTGGGTTTTACGCGCCATGAGGT CAATGGGATTGCGTATTGGTACCGGTCGCGGGTGAAGGATGTACCCGCAG GAGAGCAGGCGAGTTTACCAATGATTTTCTTTCATGGCATCTCGCCGGGG TTGAATTTATATTTGCTGGTGATTCATATTTTGTCGAAGGGACGGAAAGT GGTTTTGATGGAGGTGCCACACATCGCCATGTGTTTGAATTTCAAAGCGA AGCGACTGGGTGACATGGTTAAGACCGTCGAGATCATAGCCAAACGCCAT CGGATGCCGCATTTTGCAGTGGCGGGACACTCATTCGGGAGTCTATGCGC GGCCTGGGTGACCAAACACCTCAAACATAATGTCCGCCAGCTCATCCTTC TCGACCCGGTCTCTCTCCTCCTCGGCCTGCCCGACGTGTGTTACAACTTT TTACACAAACGACCGCGAACAATAATGGAATATATACTCCACTACGGCGG ATCTACGGAAATCACTATCCATCACACCTTGCGTCGGCAGTTCTGGTGGT ACGAAGGCCAGCTTTTTTTAGATGCAATCAAATGCCCTGTTTTCATTGGT TTGAGTGGAAACGACGAGATTGTTCCCTCGCCGGTCCTGAAAGTTTATAT CGAGGACCACTTGAAAAAGATCCATGCAGAGGAGCATCAGCGGTACCAGG CGCGGTCCAAGTGCAGCAACAGCAGCAGCAACGACAGCACATCAGCGCAA CGACAGTGTAGTTTGAGCTCTAGTGGAACAGGCAACGGGAATCACTACAG CAATCATGGCAGCATCAGCAACGACAATCTACCTAAGTCGAGTCACAGCA GCAGCAACGATGGAAAAGGTTACAATAGCAGCAGCAGCGGCAGCAGCAGC AGCAGGAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCGGTGGACCTAGTGA AAAAGCCGTAGTGTCGTTTGAGCTGACAGCTTCGGAAAGAGCCAAAAGTA CCAATGGTGGGTGTAGCGGTGAATGTGGAGCAGCAGCAGGAGCAACAGCT TCTTGTTATCTGGGAGATAAACGCGGGTGCGTCTTAGAGAGAGTCCAGTA CTCCTACTGGGAAGGATGGTCGCATGGGGAGATATTGTTCCGATTTCCTC AACTCAAGGCTTTGGATGTGGCAATGCGGGAGCAAGAAAAGCTCTTTCGC TCTCCGGAGGTGACGGTAGCGATGGAAGCTTCGACGAAGGCACCATCGAG GCAGAGTAGTTTAAAATAGTGTCGCGTTGATGGTGGTGCTGCAGCGGCGC ACCATTATTCGAGAAAACCGAGCACGAGTCTGAGTGCAGCGGTGGT back to topprotein sequence of jgi.p|Nanoce1779_2|114772 >mRNA_6838-protein ID=mRNA_6838-protein|Name=jgi.p|Nanoce1779_2|114772|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp MVCLPPLLDNLRGFIWSIVLSTSFLILAGLVLGVWLLCEIVFYFYLRYIV LPELNRLTTPEDSVHTPWDEFHKIIDVVSQLKGSYAFEQFFSGWFLGSPI QDIRRGNVREMLAWALYSTAQSALTVRQKACVEDVLYWLKMRFQIDCPEG YNPKVRPMLLTLDPVKYNHRPLLFYAVLTVIQVLGHGVLMLLGFTRHEVN GIAYWYRSRVKDVPAGEQASLPMIFFHGISPGLNLYLLVIHILSKGRKVV LMEVPHIAMCLNFKAKRLGDMVKTVEIIAKRHRMPHFAVAGHSFGSLCAA WVTKHLKHNVRQLILLDPVSLLLGLPDVCYNFLHKRPRTIMEYILHYGGS TEITIHHTLRRQFWWYEGQLFLDAIKCPVFIGLSGNDEIVPSPVLKVYIE DHLKKIHAEEHQRYQARSKCSNSSSNDSTSAQRQCSLSSSGTGNGNHYSN HGSISNDNLPKSSHSSSNDGKGYNSSSSGSSSSRSSSSSSRSSSGGPSEK AVVSFELTASERAKSTNGGCSGECGAAAGATASCYLGDKRGCVLERVQYS YWEGWSHGEILFRFPQLKALDVAMREQEKLFRSPEVTVAMEASTKAPSRQ SSLK* back to topmRNA from alignment at scaffold_17:227350..229638- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6838 ID=mRNA_6838|Name=jgi.p|Nanoce1779_2|114772|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp|location=Sequence derived from alignment at scaffold_17:227350..229638- (Nannochloropsis oceanica) CAGGGCACGCTCTGTGCAACGCCCGCGATTCCGACCTTATCTAGTCTGCC
TCAGCTCACCCCTGTCCCTCTTCCCCCCTCCAATTAACAGGCTAGGCAAG
GGCGATGGTGTGCCTCCCACCCCTACTCGATAATCTGCGGGGCTTTATCT
GGTCTATAGTCCTCTCTACTTCTTTCCTTATATTGGCCGGGCTGGTGCTG
GGTGTCTGGCTTCTGTGTGAAATTGTCTTTTACTTCTACCTCCGATACAT
CGTCCTGCCGGAGCTGAATCGATTAACAACACCGGAGGACAGCGTCCATA
CGCCTTGGGATGAGTTTCATAAGATTATTGATGTCGTCAGTCAGCTCAAG
GTGTGTTGTGAATCTCAACCCTCTACTCTCACCCATGCACCATTCAACAA
CAGCTTTTTGGTGATATGTTTAATCTCTGTTGTTTGTTGTGTATGTCTTC
TTTTTTCGGCCGCCCACCCATCCTCCCCCTCTCCATGCTCCCCTCCCTAT
GCAAAGGGTTCCTACGCATTCGAGCAGTTTTTCTCCGGCTGGTTCCTAGG
CTCGCCGATTCAAGACATACGCCGAGGAAATGTCAGAGAAATGCTTGCTT
GGGCCCTCTACAGCACAGCGCAATCAGCCTTGACAGTCAGGCAGAAGGCT
TGTGTTGAAGATGTGAGTGAGAGGGGGGAGGATGGGAGAGCGGGAAGGGG
AATGGAATGTATGTGGACATGTATATCTACGCGTCTTCTCCATACACTTT
CCGAAAGCATTCTTAAGGCTCTCCTTCCATCTCTTCCACCCTCCCGTAGG
TGCTATACTGGCTTAAAATGCGCTTCCAGATCGACTGTCCCGAAGGCTAC
AACCCTAAGGTCCGGCCGATGCTGCTAACGCTGGACCCAGTCAAATACAA
TCATCGCCCCCTTTTGTTTTACGCTGTCTTGACTGTGATTCAAGTTTTGG
GCCATGGGGTGTTAATGCTGTTGGGTTTTACGCGCCATGAGGTCAATGGG
ATTGCGTATTGGTACCGGTCGCGGGTGAAGGATGTACCCGCAGGAGAGCA
GGCGAGTTTACCAATGATTTTCTTTCATGGCATCTCGCCGGGGTTGAATT
TATATTTGCTGGTGATTCATATTTTGTCGAAGGGACGGAAAGTGGTTTTG
ATGGAGGTGCCACACATCGCCATGTGTTTGAATTTCAAAGCGAAGCGACT
GGGTGACATGGTTAAGACCGTCGAGATCATAGCCAAACGCCATCGGATGC
CGCATTTTGCAGTGGCGGGACACTCATTCGGGAGTCTATGCGCGGCCTGG
GTGACCAAACACCTCAAACATAATGTCCGCCAGCTCATCCTTCTCGACCC
GGTCTCTCTCCTCCTCGGCCTGCCCGACGTGTGTTACAACTTTTTACACA
AACGACCGCGAACAATAATGGAATATATACTCCACTACGGCGGATCTACG
GAAATCACTATCCATCACACCTTGCGTCGGCAGTTCTGGTGGTACGAAGG
CCAGCTTTTTTTAGATGCAATCAAATGCCCTGTTTTCATTGGTTTGAGTG
GAAACGACGAGATTGTTCCCTCGCCGGTCCTGAAAGTTTATATCGAGGAC
CACTTGAAAAAGATCCATGCAGAGGAGCATCAGCGGTACCAGGCGCGGTC
CAAGTGCAGCAACAGCAGCAGCAACGACAGCACATCAGCGCAACGACAGT
GTAGTTTGAGCTCTAGTGGAACAGGCAACGGGAATCACTACAGCAATCAT
GGCAGCATCAGCAACGACAATCTACCTAAGTCGAGTCACAGCAGCAGCAA
CGATGGAAAAGGTTACAATAGCAGCAGCAGCGGCAGCAGCAGCAGCAGGA
GCAGCAGCAGCAGCAGCAGGAGCAGCAGCGGTGGACCTAGTGAAAAAGCC
GTAGTGTCGTTTGAGCTGACAGCTTCGGAAAGAGCCAAAAGTACCAATGG
TGGGTGTAGCGGTGAATGTGGAGCAGCAGCAGGAGCAACAGCTTCTTGTT
ATCTGGGAGATAAACGCGGGTGCGTCTTAGAGAGAGTCCAGTACTCCTAC
TGGGAAGGATGGTCGCATGGGGAGATATTGTTCCGATTTCCTCAACTCAA
GGCTTTGGATGTGGCAATGCGGGAGCAAGAAAAGCTCTTTCGCTCTCCGG
AGGTGACGGTAGCGATGGAAGCTTCGACGAAGGCACCATCGAGGCAGAGT
AGTTTAAAATAGTGTCGCGTTGATGGTGGTGCTGCAGCGGCGCACCATTA
TTCGAGAAAACCGAGCACGAGTCTGAGTGCAGCGGTGGT back to topCoding sequence (CDS) from alignment at scaffold_17:227350..229638- >mRNA_6838 ID=mRNA_6838|Name=jgi.p|Nanoce1779_2|114772|organism=Nannochloropsis oceanica|type=CDS|length=5445bp|location=Sequence derived from alignment at scaffold_17:227350..229638- (Nannochloropsis oceanica) GTGCTATACTGGCTTAAAATGCGCTTCCAGATCGACTGTCCCGAAGGCTA CAACCCTAAGGTCCGGCCGATGCTGCTAACGCTGGACCCAGTCAAATACA ATCATCGCCCCCTTTTGTTTTACGCTGTCTTGACTGTGATTCAAGTTTTG GGCCATGGGGTGTTAATGCTGTTGGGTTTTACGCGCCATGAGGTCAATGG GATTGCGTATTGGTACCGGTCGCGGGTGAAGGATGTACCCGCAGGAGAGC AGGCGAGTTTACCAATGATTTTCTTTCATGGCATCTCGCCGGGGTTGAAT TTATATTTGCTGGTGATTCATATTTTGTCGAAGGGACGGAAAGTGGTTTT GATGGAGGTGCCACACATCGCCATGTGTTTGAATTTCAAAGCGAAGCGAC TGGGTGACATGGTTAAGACCGTCGAGATCATAGCCAAACGCCATCGGATG CCGCATTTTGCAGTGGCGGGACACTCATTCGGGAGTCTATGCGCGGCCTG GGTGACCAAACACCTCAAACATAATGTCCGCCAGCTCATCCTTCTCGACC CGGTCTCTCTCCTCCTCGGCCTGCCCGACGTGTGTTACAACTTTTTACAC AAACGACCGCGAACAATAATGGAATATATACTCCACTACGGCGGATCTAC GGAAATCACTATCCATCACACCTTGCGTCGGCAGTTCTGGTGGTACGAAG GCCAGCTTTTTTTAGATGCAATCAAATGCCCTGTTTTCATTGGTTTGAGT GGAAACGACGAGATTGTTCCCTCGCCGGTCCTGAAAGTTTATATCGAGGA CCACTTGAAAAAGATCCATGCAGAGGAGCATCAGCGGTACCAGGCGCGGT CCAAGTGCAGCAACAGCAGCAGCAACGACAGCACATCAGCGCAACGACAG TGTAGTTTGAGCTCTAGTGGAACAGGCAACGGGAATCACTACAGCAATCA TGGCAGCATCAGCAACGACAATCTACCTAAGTCGAGTCACAGCAGCAGCA ACGATGGAAAAGGTTACAATAGCAGCAGCAGCGGCAGCAGCAGCAGCAGG AGCAGCAGCAGCAGCAGCAGGAGCAGCAGCGGTGGACCTAGTGAAAAAGC CGTAGTGTCGTTTGAGCTGACAGCTTCGGAAAGAGCCAAAAGTACCAATG GTGGGTGTAGCGGTGAATGTGGAGCAGCAGCAGGAGCAACAGCTTCTTGT TATCTGGGAGATAAACGCGGGTGCGTCTTAGAGAGAGTCCAGTACTCCTA CTGGGAAGGATGGTCGCATGGGGAGATATTGTTCCGATTTCCTCAACTCA AGGCTTTGGATGTGGCAATGCGGGAGCAAGAAAAGCTCTTTCGCTCTCCG GAGGTGACGGTAGCGATGGAAGCTTCGACGAAGGCACCATCGAGGCAGAG TAGTTTAAAATAGGGTTCCTACGCATTCGAGCAGTTTTTCTCCGGCTGGT TCCTAGGCTCGCCGATTCAAGACATACGCCGAGGAAATGTCAGAGAAATG CTTGCTTGGGCCCTCTACAGCACAGCGCAATCAGCCTTGACAGTCAGGCA GAAGGCTTGTGTTGAAGATATGGTGTGCCTCCCACCCCTACTCGATAATC TGCGGGGCTTTATCTGGTCTATAGTCCTCTCTACTTCTTTCCTTATATTG GCCGGGCTGGTGCTGGGTGTCTGGCTTCTGTGTGAAATTGTCTTTTACTT CTACCTCCGATACATCGTCCTGCCGGAGCTGAATCGATTAACAACACCGG AGGACAGCGTCCATACGCCTTGGGATGAGTTTCATAAGATTATTGATGTC GTCAGTCAGCTCAAGGTGCTATACTGGCTTAAAATGCGCTTCCAGATCGA CTGTCCCGAAGGCTACAACCCTAAGGTCCGGCCGATGCTGCTAACGCTGG ACCCAGTCAAATACAATCATCGCCCCCTTTTGTTTTACGCTGTCTTGACT GTGATTCAAGTTTTGGGCCATGGGGTGTTAATGCTGTTGGGTTTTACGCG CCATGAGGTCAATGGGATTGCGTATTGGTACCGGTCGCGGGTGAAGGATG TACCCGCAGGAGAGCAGGCGAGTTTACCAATGATTTTCTTTCATGGCATC TCGCCGGGGTTGAATTTATATTTGCTGGTGATTCATATTTTGTCGAAGGG ACGGAAAGTGGTTTTGATGGAGGTGCCACACATCGCCATGTGTTTGAATT TCAAAGCGAAGCGACTGGGTGACATGGTTAAGACCGTCGAGATCATAGCC AAACGCCATCGGATGCCGCATTTTGCAGTGGCGGGACACTCATTCGGGAG TCTATGCGCGGCCTGGGTGACCAAACACCTCAAACATAATGTCCGCCAGC TCATCCTTCTCGACCCGGTCTCTCTCCTCCTCGGCCTGCCCGACGTGTGT TACAACTTTTTACACAAACGACCGCGAACAATAATGGAATATATACTCCA CTACGGCGGATCTACGGAAATCACTATCCATCACACCTTGCGTCGGCAGT TCTGGTGGTACGAAGGCCAGCTTTTTTTAGATGCAATCAAATGCCCTGTT TTCATTGGTTTGAGTGGAAACGACGAGATTGTTCCCTCGCCGGTCCTGAA AGTTTATATCGAGGACCACTTGAAAAAGATCCATGCAGAGGAGCATCAGC GGTACCAGGCGCGGTCCAAGTGCAGCAACAGCAGCAGCAACGACAGCACA TCAGCGCAACGACAGTGTAGTTTGAGCTCTAGTGGAACAGGCAACGGGAA TCACTACAGCAATCATGGCAGCATCAGCAACGACAATCTACCTAAGTCGA GTCACAGCAGCAGCAACGATGGAAAAGGTTACAATAGCAGCAGCAGCGGC AGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCGGTGG ACCTAGTGAAAAAGCCGTAGTGTCGTTTGAGCTGACAGCTTCGGAAAGAG CCAAAAGTACCAATGGTGGGTGTAGCGGTGAATGTGGAGCAGCAGCAGGA GCAACAGCTTCTTGTTATCTGGGAGATAAACGCGGGTGCGTCTTAGAGAG AGTCCAGTACTCCTACTGGGAAGGATGGTCGCATGGGGAGATATTGTTCC GATTTCCTCAACTCAAGGCTTTGGATGTGGCAATGCGGGAGCAAGAAAAG CTCTTTCGCTCTCCGGAGGTGACGGTAGCGATGGAAGCTTCGACGAAGGC ACCATCGAGGCAGAGTAGTTTAAAATAGGGTTCCTACGCATTCGAGCAGT TTTTCTCCGGCTGGTTCCTAGGCTCGCCGATTCAAGACATACGCCGAGGA AATGTCAGAGAAATGCTTGCTTGGGCCCTCTACAGCACAGCGCAATCAGC CTTGACAGTCAGGCAGAAGGCTTGTGTTGAAGATATGGTGTGCCTCCCAC CCCTACTCGATAATCTGCGGGGCTTTATCTGGTCTATAGTCCTCTCTACT TCTTTCCTTATATTGGCCGGGCTGGTGCTGGGTGTCTGGCTTCTGTGTGA AATTGTCTTTTACTTCTACCTCCGATACATCGTCCTGCCGGAGCTGAATC GATTAACAACACCGGAGGACAGCGTCCATACGCCTTGGGATGAGTTTCAT AAGATTATTGATGTCGTCAGTCAGCTCAAGGTGCTATACTGGCTTAAAAT GCGCTTCCAGATCGACTGTCCCGAAGGCTACAACCCTAAGGTCCGGCCGA TGCTGCTAACGCTGGACCCAGTCAAATACAATCATCGCCCCCTTTTGTTT TACGCTGTCTTGACTGTGATTCAAGTTTTGGGCCATGGGGTGTTAATGCT GTTGGGTTTTACGCGCCATGAGGTCAATGGGATTGCGTATTGGTACCGGT CGCGGGTGAAGGATGTACCCGCAGGAGAGCAGGCGAGTTTACCAATGATT TTCTTTCATGGCATCTCGCCGGGGTTGAATTTATATTTGCTGGTGATTCA TATTTTGTCGAAGGGACGGAAAGTGGTTTTGATGGAGGTGCCACACATCG CCATGTGTTTGAATTTCAAAGCGAAGCGACTGGGTGACATGGTTAAGACC GTCGAGATCATAGCCAAACGCCATCGGATGCCGCATTTTGCAGTGGCGGG ACACTCATTCGGGAGTCTATGCGCGGCCTGGGTGACCAAACACCTCAAAC ATAATGTCCGCCAGCTCATCCTTCTCGACCCGGTCTCTCTCCTCCTCGGC CTGCCCGACGTGTGTTACAACTTTTTACACAAACGACCGCGAACAATAAT GGAATATATACTCCACTACGGCGGATCTACGGAAATCACTATCCATCACA CCTTGCGTCGGCAGTTCTGGTGGTACGAAGGCCAGCTTTTTTTAGATGCA ATCAAATGCCCTGTTTTCATTGGTTTGAGTGGAAACGACGAGATTGTTCC CTCGCCGGTCCTGAAAGTTTATATCGAGGACCACTTGAAAAAGATCCATG CAGAGGAGCATCAGCGGTACCAGGCGCGGTCCAAGTGCAGCAACAGCAGC AGCAACGACAGCACATCAGCGCAACGACAGTGTAGTTTGAGCTCTAGTGG AACAGGCAACGGGAATCACTACAGCAATCATGGCAGCATCAGCAACGACA ATCTACCTAAGTCGAGTCACAGCAGCAGCAACGATGGAAAAGGTTACAAT AGCAGCAGCAGCGGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAG GAGCAGCAGCGGTGGACCTAGTGAAAAAGCCGTAGTGTCGTTTGAGCTGA CAGCTTCGGAAAGAGCCAAAAGTACCAATGGTGGGTGTAGCGGTGAATGT GGAGCAGCAGCAGGAGCAACAGCTTCTTGTTATCTGGGAGATAAACGCGG GTGCGTCTTAGAGAGAGTCCAGTACTCCTACTGGGAAGGATGGTCGCATG GGGAGATATTGTTCCGATTTCCTCAACTCAAGGCTTTGGATGTGGCAATG CGGGAGCAAGAAAAGCTCTTTCGCTCTCCGGAGGTGACGGTAGCGATGGA AGCTTCGACGAAGGCACCATCGAGGCAGAGTAGTTTAAAATAGGGTTCCT ACGCATTCGAGCAGTTTTTCTCCGGCTGGTTCCTAGGCTCGCCGATTCAA GACATACGCCGAGGAAATGTCAGAGAAATGCTTGCTTGGGCCCTCTACAG CACAGCGCAATCAGCCTTGACAGTCAGGCAGAAGGCTTGTGTTGAAGATA TGGTGTGCCTCCCACCCCTACTCGATAATCTGCGGGGCTTTATCTGGTCT ATAGTCCTCTCTACTTCTTTCCTTATATTGGCCGGGCTGGTGCTGGGTGT CTGGCTTCTGTGTGAAATTGTCTTTTACTTCTACCTCCGATACATCGTCC TGCCGGAGCTGAATCGATTAACAACACCGGAGGACAGCGTCCATACGCCT TGGGATGAGTTTCATAAGATTATTGATGTCGTCAGTCAGCTCAAG back to top
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