jgi.p|Nanoce1779_2|596383, mRNA_6805 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596383
Unique Name	mRNA_6805
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1715
Alignment location	scaffold_17:142322..144400 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596469
Track	FilteredModels2
ProteinId	596383

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:142322..144400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596383	gene_6805	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596383	mRNA_6805-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6805	CDS_6805	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:142322..144400+
coding sequence from alignment at scaffold_17:142322..144400+

mRNA sequence

>mRNA_6805 ID=mRNA_6805|Name=jgi.p|Nanoce1779_2|596383|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp
CCGCCACTCAAAATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGA
GAGCGCCCAGAAGCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACT
TGCTGGTCCGAAGGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGAC
AGCCTGCGAGTTGGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTAT
TGCCGTAGAAGACCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACT
CTGCAACTTTGGCGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTT
ACATACTGTCACCTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGG
ATGTTTCATTGTGACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGC
TATGTGCGCCATTTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTT
TTGCCGCCTGTATTTGTATTGCCTTTTTTCTGTTTGTAGAAAAGAAGCAG
GGAAGCAGCGGGGGGAAAAGAGGGGAAGTAAGAAGCAGTGAAGTGTTCGG
GGGGGCGTTGGTGAGACATACAAAGAATGATAACATTGTATTATCTCGTT
ATCTTGCCTATTTTCCTCCTTTAAAGAAGCAGGAAATGAATGTGGGGGGG
TAGAAATAGATAGGAACAGAGAAGAAATAAAGAGGGGTAGAGAAAGGACG
GACACATGTAATATTCAATTTTGAGACGGGGCATGAGAACAGCTTATAAG
ATCACTCACTCCGCAGAGGGAGGGGGGCAGGGAGTGAAAATATGGCATGA
GCGATGGGTATTTTTCCGTTCGTGACTCTTAGCTGCTTTACACCCCTTCC
CCCTCCTCCTCGTCAACATCCAATACCACCATCGTAAACCGCAGCAATCA
TTTTTGACATCGAAGATACGAAAAAGAAGCGAGAGTGAAAAGAAGGAGTA
CAAAAGAGCCATTATTTCTATCTGGTAGAGGATCAGAGAGACATTCTTCT
ATTGGACAGGAATGGGTAGGAAGGAATGAGGGGAGGAGGGCACAGGGCAA
TGGAGAAATTATTATATGGACAGAGCCAAGAGACTGGGGGAAGAAAGGCG
ATTGAGGACTTAAGCGCTGGAAACTTTCCTTTTTGTTGATTTTGGCTCCT
CAATAAATGCTATTGTGATGCTTCTTTTCAATTCAAACCGTAGTTTCTTC
GCTTGTCTATTTTTAGAATCGATTCGCCACGTCTATCTACTTGTGTGTAC
ATGTCTGTCAACCATCCTCTACTTCCACGACGGGTCTGCCGTTCTGCAGT
CCCACGAAACGCCGCACAGTCACGCGGCGCCGGTCTTCGGCCTTGCGTTG
CGCCTTGGACATGAACAGGAGGCGGAATGGTCTCGGCAATTTCTTCACCA
GATCCTTCCTATCCTTGGCGTTAAAGAGCTTTGCCGTCCCATCCACCGCT
CCATTATACCCGGCCTTCAGAAATGAGGTCAATCGATACCGTACTTCATA
TTTCTTCTCCGCCTCCTCCACCTCCATCCATTTTTTCAATGAGAACTTCT
GCAACGCTTCCATCTTCCTGAGCACCGCATACTTTCTATCGAATGCCTCC
CATTTCTTCGCATAAATATAGCTCAACCTGCCCGTCCGGTACATGAACAC
CAACTGTCTAGTCTTGACTGCAACTTGCCATCCCACTGCGCGGATCACAT
CACTTATCGCCCCCC

protein sequence of jgi.p|Nanoce1779_2|596383

>mRNA_6805-protein ID=mRNA_6805-protein|Name=jgi.p|Nanoce1779_2|596383|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MMPSTRRGEEEGESAQKQRRQQQQQQTTNLLVRRPAGKCLSLAVPDSLRV
GELKSQLSLTTGIAVEDQYLMYQCKLLQDSATLALYGLGGTEGSDLTYCH
LPMVDMGVRQRGGCFIVTFTILSILFFATLCAPFTCGTSLFLYLFLLPPV
FVLPFFCL*

mRNA from alignment at scaffold_17:142322..144400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6805 ID=mRNA_6805|Name=jgi.p|Nanoce1779_2|596383|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at scaffold_17:142322..144400+ (Nannochloropsis oceanica)
CCGCCACTCAAAATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGA
GAGCGCCCAGAAGCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACT
TGCTGGTCCGAAGGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGAC
AGCCTGCGAGTTGGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTAT
TGCCGTAGAAGACCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACT
CTGCAACTTTGGCGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTT
ACATACTGTCACCTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGG
ATGTTTCATTGTGACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGC
TATGTGCGCCATTTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTT
TTGCCGCCTGTATTTGTATTGCCTTTTTTCTGTTTGTAGAAAAGAAGCAG
GGAAGCAGCGGGGGGAAAAGAGGGGAAGTAAGAAGCAGTGAAGTGTTCGG
GGGGGCGTTGGTGAGACATACAAAGAATGATAACATTGTATTATCTCGTT
ATCTTGCCTATTTTCCTCCTTTAAAGAAGCAGGAAATGAATGTGGGGGGG
TAGAAATAGATAGGAACAGAGAAGAAATAAAGAGGGGTAGAGAAAGGACG
GACACATGTAATATTCAATTTTGAGACGGGGCATGAGAACAGCTTATAAG
ATCACTCACTCCGCAGAGGGAGGGGGGCAGGGAGTGAAAATATGGCATGA
GCGATGGGTATTTTTCCGTTCGTGACTCTTAGCTGCTTTACACCCCTTCC
CCCTCCTCCTCGTCAACATCCAATACCACCATCGTAAACCGCAGCAATCA
TTTTTGACATCGAAGATACGAAAAAGAAGCGAGAGTGAAAAGAAGGAGTA
CAAAAGAGCCATTATTTCTATCTGGTAGAGGATCAGAGAGACATTCTTCT
ATTGGACAGGAATGGGTAGGAAGGAATGAGGGGAGGAGGGCACAGGGCAA
TGGAGAAATTATTATATGGACAGAGCCAAGAGACTGGGGGAAGAAAGGCG
ATTGAGGACTTAAGCGCTGGAAACTTTCCTTTTTGTTGATTTTGGCTCCT
CAATAAATGCTATTGTGATGCTTCTTTTCAATTCAAACCGTAGTTTCTTC
GCTTGTCTATTTTTAGAATCGATTCGCCACGTCTATCTACTTGTGTGTAC
ATGTCTGTCAACCATCCTCTACTTCCACGACGGGTCTGCCGTTCTGCAGT
CCCACGAAACGCCGCACAGTCACGCGGCGCCGGTCTTCGGCCTTGCGTTG
CGCCTTGGACATGAACAGGAGGCGGAATGGTCTCTGAAAAGGAGAATGTG
CGTGTGTGTGGGGGGGGGGCCGTGTGTGTGTGTGTGTGTAAGTGTGTGTG
AGAGAAGGGTGTGTAATGAGGGGGATTGTGTACGTAAAGAGAGGAAAGGA
GGGTGGGAGGTGTGCGTGGTGGAGAAGGAAAGGAGGATGAGGGAGAGTAT
GACATGTCAGGGACAACATACATAGATGCAGGCGCGACTACACCCCCAGG
GACGCTTGTGAAAGACGCGATACAAACAAACTCGTTCCACTGCCCGCAAC
AGACTGCGTATGTTCAAAATCTACGTAAATACAGATCCATCCCTCTTTCC
CCTCCCTCTTTTTCAATCACTCCCTTCCCCTCGCCAGATAGACCTACCGG
CAATTTCTTCACCAGATCCTTCCTATCCTTGGCGTTAAAGAGCTTTGCCG
TCCCATCCACCGCTCCATTATACCCGGCCTTCAGAAATGAGGTCAATCGA
TACCGTACTTCATATTTCTTCTCCGCCTCCTCCACCTCCATCCATTTTTT
CAATGAGAACTTCTGCAACGCTTCCATCTTCCTGAGCACCGCATACTTTC
TATCGAATGCCTCCCATTTCTTCGCATAAATATAGCTCAACCTGCCCGTC
CGGTACATGAACACCAACTGTCTAGTCTTGACTGCAACTTGCCATCCCAC
TGCGCGGATCACATCACTTATCGCCCCCC

Coding sequence (CDS) from alignment at scaffold_17:142322..144400+

>mRNA_6805 ID=mRNA_6805|Name=jgi.p|Nanoce1779_2|596383|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_17:142322..144400+ (Nannochloropsis oceanica)
ATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGAGAGCGCCCAGAA
GCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACTTGCTGGTCCGAA
GGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGACAGCCTGCGAGTT
GGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTATTGCCGTAGAAGA
CCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACTCTGCAACTTTGG
CGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTTACATACTGTCAC
CTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGGATGTTTCATTGT
GACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGCTATGTGCGCCAT
TTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTTTTGCCGCCTGTA
TTTGTATTGCCTTTTTTCTGTTTGTAG

Synonyms

Publications