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Properties
| Property Name | Value |
|---|
| TranscriptId | 557925 |
| Track | FilteredModels2 |
| ProteinId | 557839 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:280344..282700 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6859 ID=mRNA_6859|Name=jgi.p|Nanoce1779_2|557839|organism=Nannochloropsis oceanica|type=mRNA|length=2051bp
ATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCTTTACAAAAC
AAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGTTCGTGCAAG
TATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAGTTTGAGAAA
AAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAACACCTGGCT
GCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCGAAGGCCGAA
AATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTGAATCTGGGA
CGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTCCATTCTAGG
TACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGCATAAGAATT
TCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTATGGTGATGGG
GCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGTCTTTGAATT
GGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTATGTTTCTGC
ATTGGTACCACCACGTGACGGTGCTCCTCTACACATGGTTCTCCTACTCG
GCTCGCAATCCCGGCATTTATTTCGTCGCCATGAACTACTCCGTGCACGC
CGTCATGTACTCCTACTACTTCCTGACGGAGATCAAGCTCTGGCCGAAAT
GGTTCAACCCTATGTGGATCACCATGGCCCAAATATCGCAGATGCTTGCC
GGGGTCGGTATCACCATCGCCTCGTTCCTCTACGCCCGTGACCCTTCCTG
CGGAGTTGTTCGGGATATGATTCCCTGGTGCGCGGGGATGTACGCGACCT
ACCTGTACTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGGCCGTCCATT
TTGAATTCATCATCATCATCATCATCATCATCATCATCATCATCGTCATC
GTCGTCGTCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAAAATGGAAGG
AGTTGGGACGGGGGGAGAATAATGAGGCAGGAACAGCTCCGGCGGCTGGA
GGGGTGGGAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAGGAAAGAAGA
ATAGCGTCAGAGAGGCAGCAACGATCAAAAAGAGATGGTAGAAGCGAGAG
ACAAGGACATTCACAACGAAGTGAAAGAGGGAGACGACAAACAACGACCG
AGCGTCGTAGAGAGACATAGGTAAAAAGAAGAAAGCGAGGAGGGAGGAAT
GGATGGAACGAGGCTGTGTATCAATAGATGGAGGACCCGCCAAGGAATGG
AAAGCGAGAGGGCGATGGACACGGACATACACTAAAACTTTCAGGGTGAT
GAAATTCATCCAGAAATGCCCGTGTGCTTGTGTGCCCCGTTAGACGCAAA
ATAGGGTGAAGGGAGGGAGGGAGGGAGAGAGCAAGGGGATGAGATGGACA
GAGAAAGAGATTGAATACATGAAAATTCATGTGTATGTTGGGGCCTCGTC
GCCATCTTAGAAGAGGACGGTAGAACCTTTCTGTGAGATATAGACCTTCA
TCCTGTCTCGTGAATTCGTTCACTTACAGGGTCACTTTTTATTTTTTTAT
GCATACACATATTAGAATGATATTCTATTATATTTATATGCATTATAGTA
ATATTTTGATGTATAACTGTACTCATGAATAGAGCAGGAAAAGCAAGCAG
CAGTAAAGTAGAAGAGATGCTTGACGCAAGGCGATAATACGCCCAGGAAA
AACAAAAGCGAGTAGAGAGATATTCGTGAAGAGGAGGGGAAAGTAGATGA
TGACGAAGAAGCCTGTGAAACAAGAAAAGCCATTTATCTCCCCTGCTCTT
CCCGCCCTTCCCTCTCCCTCCTCATCATTTCCACTACTACCACCTAGAAC
GACACCGACGAGGCTGAGGGGAAGTGGGAGAACTAAAGAAAGGTAAACCC
AACGATCAGATTGAGGTGAGAGGCAGAAGGGAGCTCAATTCTCCCGTCTA
CTTGTTCCTATTCGAGGTGACCAAAAAGAAATTACAACCATCTTCGTCGT
C back to topprotein sequence of jgi.p|Nanoce1779_2|557839 >mRNA_6859-protein ID=mRNA_6859-protein|Name=jgi.p|Nanoce1779_2|557839|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MSLPPWLWQDPTPLYKTSQYITRDPLNPRRFVQVFQSIPVLEPLYTEFEK
KFNVKESYRIIRDNTWLPIIATILYLSFMIEGRKYVERRKLEGKGPVNLG
RFPAFWNAFLASFSILGTLRVVPHLLFMFTHKNFRGTVCEPPDTAGYGDG
AAGMWVMLFTVSKVFELVDTMILVLKGKNPMFLHWYHHVTVLLYTWFSYS
ARNPGIYFVAMNYSVHAVMYSYYFLTEIKLWPKWFNPMWITMAQISQMLA
GVGITIASFLYARDPSCGVVRDMIPWCAGMYATYLYFFVLFFMERFWPSI
LNSSSSSSSSSSSSSSSSSSSSSSSSSSRRKWKELGRGENNEAGTAPAAG
GVGRRTATRGGKSRKEE* back to topmRNA from alignment at scaffold_17:280344..282700- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6859 ID=mRNA_6859|Name=jgi.p|Nanoce1779_2|557839|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at scaffold_17:280344..282700- (Nannochloropsis oceanica)
ATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCTTTACAAAAC
AAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGTTCGTGCAAG
TATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAGTTTGAGAAA
AAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAACACCTGGCT
GCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCGAAGGCCGAA
AATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTGAATCTGGGA
CGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTCCATTCTAGG
TACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGCATAAGAATT
TCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTATGGTGATGGG
GCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGTCTTTGAATT
GGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTATGTTTCTGC
ATTGGTGAGGAAGACGTGTGGGAGGAGGGAGGGAGGGATGGAGGGATGGC
GGGCGGGAAAAGCATTCGAAATATCACCATACTTATTCCACTCGTCGCTC
TCTTCGTCCCGACTCTTCACCACAGGTACCACCACGTGACGGTGCTCCTC
TACACATGGTTCTCCTACTCGGCTCGCAATCCCGGCATTTATTTCGTCGC
CATGAACTACTCCGTGCACGCCGTCATGTACTCCTACTACTTCCTGACGG
AGATCAAGCTCTGGCCGAAATGGTTCAAGTATGTGCCCTTCTTTCCCTCT
CGCTCTTCCTTACTCCCTCCCTTTCTCCTTCTTCCCTTCATTGCGTCATT
CATTTCCACAAGGATCCCCCTTCCTTCCACCCACCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCAGCCCTATGTGGATCACCATGGCCCAAATATCGCAGATG
CTTGCCGGGGTCGGTATCACCATCGCCTCGTTCCTCTACGCCCGTGACCC
TTCCTGCGGAGTTGTTCGGGATATGATTCCCTGGTGCGCGGGGATGTACG
CGACCTACCTGTACTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGGCCG
TCCATTTTGAATTCATCATCATCATCATCATCATCATCATCATCATCATC
GTCATCGTCGTCGTCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAAAAT
GGAAGGAGTTGGGACGGGGGGAGAATAATGAGGCAGGAACAGCTCCGGCG
GCTGGAGGGGTGGGAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAGGAA
AGAAGAATAGCGTCAGAGAGGCAGCAACGATCAAAAAGAGATGGTAGAAG
CGAGAGACAAGGACATTCACAACGAAGTGAAAGAGGGAGACGACAAACAA
CGACCGAGCGTCGTAGAGAGACATAGGTAAAAAGAAGAAAGCGAGGAGGG
AGGAATGGATGGAACGAGGCTGTGTATCAATAGATGGAGGACCCGCCAAG
GAATGGAAAGCGAGAGGGCGATGGACACGGACATACACTAAAACTTTCAG
GGTGATGAAATTCATCCAGAAATGCCCGTGTGCTTGTGTGCCCCGTTAGA
CGCAAAATAGGGTGAAGGGAGGGAGGGAGGGAGAGAGCAAGGGGATGAGA
TGGACAGAGAAAGAGATTGAATACATGAAAATTCATGTGTATGTTGGGGC
CTCGTCGCCATCTTAGAAGAGGACGGTAGAACCTTTCTGTGAGATATAGA
CCTTCATCCTGTCTCGTGAATTCGTTCACTTACAGGGTCACTTTTTATTT
TTTTATGCATACACATATTAGAATGATATTCTATTATATTTATATGCATT
ATAGTAATATTTTGATGTATAACTGTACTCATGAATAGAGCAGGAAAAGC
AAGCAGCAGTAAAGTAGAAGAGATGCTTGACGCAAGGCGATAATACGCCC
AGGAAAAACAAAAGCGAGTAGAGAGATATTCGTGAAGAGGAGGGGAAAGT
AGATGATGACGAAGAAGCCTGTGAAACAAGAAAAGCCATTTATCTCCCCT
GCTCTTCCCGCCCTTCCCTCTCCCTCCTCATCATTTCCACTACTACCACC
TAGAACGACACCGACGAGGCTGAGGGGAAGTGGGAGAACTAAAGAAAGGT
AAACCCAACGATCAGATTGAGGTGAGAGGCAGAAGGGAGCTCAATTCTCC
CGTCTACTTGTTCCTATTCGAGGTGACCAAAAAGAAATTACAACCATCTT
CGTCGTC back to topCoding sequence (CDS) from alignment at scaffold_17:280344..282700- >mRNA_6859 ID=mRNA_6859|Name=jgi.p|Nanoce1779_2|557839|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_17:280344..282700- (Nannochloropsis oceanica)
CCCTATGTGGATCACCATGGCCCAAATATCGCAGATGCTTGCCGGGGTCG
GTATCACCATCGCCTCGTTCCTCTACGCCCGTGACCCTTCCTGCGGAGTT
GTTCGGGATATGATTCCCTGGTGCGCGGGGATGTACGCGACCTACCTGTA
CTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGGCCGTCCATTTTGAATT
CATCATCATCATCATCATCATCATCATCATCATCATCGTCATCGTCGTCG
TCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAAAATGGAAGGAGTTGGG
ACGGGGGGAGAATAATGAGGCAGGAACAGCTCCGGCGGCTGGAGGGGTGG
GAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAGGAAAGAAGAATAGGTA
CCACCACGTGACGGTGCTCCTCTACACATGGTTCTCCTACTCGGCTCGCA
ATCCCGGCATTTATTTCGTCGCCATGAACTACTCCGTGCACGCCGTCATG
TACTCCTACTACTTCCTGACGGAGATCAAGCTCTGGCCGAAATGGTTCAA
ATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCTTTACAAAAC
AAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGTTCGTGCAAG
TATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAGTTTGAGAAA
AAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAACACCTGGCT
GCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCGAAGGCCGAA
AATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTGAATCTGGGA
CGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTCCATTCTAGG
TACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGCATAAGAATT
TCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTATGGTGATGGG
GCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGTCTTTGAATT
GGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTATGTTTCTGC
ATTGCCCTATGTGGATCACCATGGCCCAAATATCGCAGATGCTTGCCGGG
GTCGGTATCACCATCGCCTCGTTCCTCTACGCCCGTGACCCTTCCTGCGG
AGTTGTTCGGGATATGATTCCCTGGTGCGCGGGGATGTACGCGACCTACC
TGTACTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGGCCGTCCATTTTG
AATTCATCATCATCATCATCATCATCATCATCATCATCATCGTCATCGTC
GTCGTCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAAAATGGAAGGAGT
TGGGACGGGGGGAGAATAATGAGGCAGGAACAGCTCCGGCGGCTGGAGGG
GTGGGAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAGGAAAGAAGAATA
GGTACCACCACGTGACGGTGCTCCTCTACACATGGTTCTCCTACTCGGCT
CGCAATCCCGGCATTTATTTCGTCGCCATGAACTACTCCGTGCACGCCGT
CATGTACTCCTACTACTTCCTGACGGAGATCAAGCTCTGGCCGAAATGGT
TCAAATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCTTTACA
AAACAAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGTTCGTG
CAAGTATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAGTTTGA
GAAAAAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAACACCT
GGCTGCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCGAAGGC
CGAAAATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTGAATCT
GGGACGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTCCATTC
TAGGTACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGCATAAG
AATTTCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTATGGTGA
TGGGGCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGTCTTTG
AATTGGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTATGTTT
CTGCATTGCCCTATGTGGATCACCATGGCCCAAATATCGCAGATGCTTGC
CGGGGTCGGTATCACCATCGCCTCGTTCCTCTACGCCCGTGACCCTTCCT
GCGGAGTTGTTCGGGATATGATTCCCTGGTGCGCGGGGATGTACGCGACC
TACCTGTACTTCTTCGTCTTGTTTTTCATGGAGCGTTTCTGGCCGTCCAT
TTTGAATTCATCATCATCATCATCATCATCATCATCATCATCATCGTCAT
CGTCGTCGTCATCGTCGTCGTCGTCGTCGTCGTCAAGAAGAAAATGGAAG
GAGTTGGGACGGGGGGAGAATAATGAGGCAGGAACAGCTCCGGCGGCTGG
AGGGGTGGGAAGGAGGACAGCCACGAGGGGAGGAAAGTCTAGGAAAGAAG
AATAGGTACCACCACGTGACGGTGCTCCTCTACACATGGTTCTCCTACTC
GGCTCGCAATCCCGGCATTTATTTCGTCGCCATGAACTACTCCGTGCACG
CCGTCATGTACTCCTACTACTTCCTGACGGAGATCAAGCTCTGGCCGAAA
TGGTTCAAATGTCACTACCCCCGTGGCTATGGCAAGACCCCACCCCTCTT
TACAAAACAAGCCAGTATATCACTCGCGACCCCTTGAACCCGCGGCGGTT
CGTGCAAGTATTTCAATCCATCCCAGTCCTTGAACCGCTCTATACCGAGT
TTGAGAAAAAATTTAATGTGAAGGAATCGTATCGCATCATCCGGGACAAC
ACCTGGCTGCCCATAATTGCCACCATTCTGTACCTCTCCTTCATGATCGA
AGGCCGAAAATACGTGGAACGCCGGAAGCTTGAGGGCAAAGGACCCGTGA
ATCTGGGACGATTCCCAGCGTTCTGGAATGCTTTCCTGGCGTCGTTTTCC
ATTCTAGGTACCTTGCGCGTAGTGCCGCATCTGTTGTTCATGTTCACGCA
TAAGAATTTCAGGGGGACGGTTTGCGAGCCGCCTGATACGGCGGGGTATG
GTGATGGGGCGGCGGGGATGTGGGTGATGCTATTTACGGTTTCCAAGGTC
TTTGAATTGGTGGACACGATGATCTTGGTGTTGAAGGGGAAGAATCCTAT
GTTTCTGCATTG back to top
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