jgi.p|Nanoce1779_2|597321, mRNA_6551 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597321
Unique NamemRNA_6551
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length793
Alignment locationscaffold_18:137857..138649 +

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Properties
Property NameValue
TranscriptId597407
TrackFilteredModels2
ProteinId597321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:137857..138649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597321gene_6551Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597321mRNA_6551-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6551CDS_6551Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6551 ID=mRNA_6551|Name=jgi.p|Nanoce1779_2|597321|organism=Nannochloropsis oceanica|type=mRNA|length=793bp
ACAGCAACCTTCCACCACTCCACCAGCATGTACTCCTTCTGCATCACCCT
CCCTTACTCGGGCATGGTCGCCGTGGGCGGTGTTATTGGCTACGTCAACA
AGAACTCCATGCCCTCCCTGCTGGCCGGCCTGGGCTTGGGCGGGGCCTTG
GCCTTGTTGGGGTGCGGTGAGTTGGCCGAGTACAAGAAGACGGGGACCGT
GACGAAGAAATGGACATTGCTCTCCCTTCTCTTGTCAGGGGGTATGACGG
CAGCGATGGGAATGAAGTGCGCCAAGAGCAAGGGTAGCTTGGCCACGGCC
ATCTTTGCTGGGACGTCCGGGTTGGTCTCGTTGTTTTTGGCATACCGTGT
TATGGTGCCCGTGCCGCCCAAGAAGGAGAAGAAGTAAGGTGTAGTGGCGT
AAGAGTTGGATGGGGTGAAAGGGAATGTATCGCGGCAAAAATTTGGGAGA
AAAAGCGAGAGGGAAGCGGATGAAAACGATATAAGTGAAGTTGGTTGCGG
GGGGATCGGGAAATGAATGCGCCGAAAAGGGAGGAGGGCTTACTGTTGGT
TTACGGCGTGGCACGGAGAGAGGGATGAAGGGAGGATTGCACGGATGCAA
CGCATTCAGATGGTGGTAAATATGAATACTGGTCGAGACGTTTCTCGTTG
AGCGTTTATTTTTGAAGATGGGATGAGCAAAAGGCGTGCACTTGCGCTCA
GGCAAGGTAAAGGAAGAAAAATTGGTATGATGCTGCTTTGATTAAGTGTC
TTAGGCATAGCAAACAGAAGTAATTTATCAACACAGATATATA
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protein sequence of jgi.p|Nanoce1779_2|597321

>mRNA_6551-protein ID=mRNA_6551-protein|Name=jgi.p|Nanoce1779_2|597321|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MYSFCITLPYSGMVAVGGVIGYVNKNSMPSLLAGLGLGGALALLGCGELA
EYKKTGTVTKKWTLLSLLLSGGMTAAMGMKCAKSKGSLATAIFAGTSGLV
SLFLAYRVMVPVPPKKEKK*
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mRNA from alignment at scaffold_18:137857..138649+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6551 ID=mRNA_6551|Name=jgi.p|Nanoce1779_2|597321|organism=Nannochloropsis oceanica|type=mRNA|length=793bp|location=Sequence derived from alignment at scaffold_18:137857..138649+ (Nannochloropsis oceanica)
ACAGCAACCTTCCACCACTCCACCAGCATGTACTCCTTCTGCATCACCCT
CCCTTACTCGGGCATGGTCGCCGTGGGCGGTGTTATTGGCTACGTCAACA
AGAACTCCATGCCCTCCCTGCTGGCCGGCCTGGGCTTGGGCGGGGCCTTG
GCCTTGTTGGGGTGCGGTGAGTTGGCCGAGTACAAGAAGACGGGGACCGT
GACGAAGAAATGGACATTGCTCTCCCTTCTCTTGTCAGGGGGTATGACGG
CAGCGATGGGAATGAAGTGCGCCAAGAGCAAGGGTAGCTTGGCCACGGCC
ATCTTTGCTGGGACGTCCGGGTTGGTCTCGTTGTTTTTGGCATACCGTGT
TATGGTGCCCGTGCCGCCCAAGAAGGAGAAGAAGTAAGGTGTAGTGGCGT
AAGAGTTGGATGGGGTGAAAGGGAATGTATCGCGGCAAAAATTTGGGAGA
AAAAGCGAGAGGGAAGCGGATGAAAACGATATAAGTGAAGTTGGTTGCGG
GGGGATCGGGAAATGAATGCGCCGAAAAGGGAGGAGGGCTTACTGTTGGT
TTACGGCGTGGCACGGAGAGAGGGATGAAGGGAGGATTGCACGGATGCAA
CGCATTCAGATGGTGGTAAATATGAATACTGGTCGAGACGTTTCTCGTTG
AGCGTTTATTTTTGAAGATGGGATGAGCAAAAGGCGTGCACTTGCGCTCA
GGCAAGGTAAAGGAAGAAAAATTGGTATGATGCTGCTTTGATTAAGTGTC
TTAGGCATAGCAAACAGAAGTAATTTATCAACACAGATATATA
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Coding sequence (CDS) from alignment at scaffold_18:137857..138649+

>mRNA_6551 ID=mRNA_6551|Name=jgi.p|Nanoce1779_2|597321|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_18:137857..138649+ (Nannochloropsis oceanica)
ATGTACTCCTTCTGCATCACCCTCCCTTACTCGGGCATGGTCGCCGTGGG
CGGTGTTATTGGCTACGTCAACAAGAACTCCATGCCCTCCCTGCTGGCCG
GCCTGGGCTTGGGCGGGGCCTTGGCCTTGTTGGGGTGCGGTGAGTTGGCC
GAGTACAAGAAGACGGGGACCGTGACGAAGAAATGGACATTGCTCTCCCT
TCTCTTGTCAGGGGGTATGACGGCAGCGATGGGAATGAAGTGCGCCAAGA
GCAAGGGTAGCTTGGCCACGGCCATCTTTGCTGGGACGTCCGGGTTGGTC
TCGTTGTTTTTGGCATACCGTGTTATGGTGCCCGTGCCGCCCAAGAAGGA
GAAGAAGTAA
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Synonyms
Publications