jgi.p|Nanoce1779_2|126204, mRNA_6737 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|126204
Unique Name	mRNA_6737
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2015
Alignment location	scaffold_18:580845..583039 +

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Properties


Property Name	Value
TranscriptId	126290
Track	FilteredModels2
ProteinId	126204

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:580845..583039 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|126204	gene_6737	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|126204	mRNA_6737-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6737	CDS_6737	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:580845..583039+
coding sequence from alignment at scaffold_18:580845..583039+

mRNA sequence

>mRNA_6737 ID=mRNA_6737|Name=jgi.p|Nanoce1779_2|126204|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
GTAAACCGATGCTGGTCGCTCCCTCTCTCGTCTTTTTCATGTTCTGCTCT
GCCTGCAACAAAATGCAAAGTCATTCAAAACGGACATCGGCGTCGGCACC
ACGCGAAACCACACACTAAGCATACAAAGTACATGTCCGACCCTGTGGAA
AATCAGCCGTCTCCATCCGTGCGGTCATTCATCAGCAAAGCTCTCTCCTA
CCCACCTCTGCCCCCATAATAATCAAATTACAGACCCGCGTTACCATGTA
CTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGCCTTTC
TCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCCACCCC
TGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTCACTAG
CTTGGACACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTTGCTGC
CCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCCTCCAC
GGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCGCCGTT
GGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAAGTCAC
CGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCCCTTCT
CATCACAACTCCGATAATCTTACCGCCGACACCGAGGCCATCAAGCAAGA
AATCAATAATATGATGCTTTCCTCCTCCTCGTCGTCCTCCTCCCTCTCCT
CCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGGGCCCC
TTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCCCAAAT
CGAGGTTTCTCCCTGGGCGTACGACGGCTCTCCACGTCCTCACAGCTGGA
CGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCCTCTCC
TCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGCGCGAG
GGAGGGAGGGAAGGTGATGGAGAGTCGCCACGGGCTTGTGCATCTCGAGA
AGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGGGCGTG
ACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCCTCGGT
GGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTACTCATT
TCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCAAGCCG
GTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGGAGGGC
GAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGAGGAGG
AGGAGAGGAAGAGGATGATGCGTGGTGCTGCCCCGGGTGCAATGGCTGAG
AAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGGAGG
GAGTGGCCCTGGCAAGATTGTTGCGAGTGCGCTTTTCCCTCCCTCTCCTT
TGACCCCTCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGTTAGGC
AGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAACTGTG
CCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGATGAAGG
GGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGATTATGGAACGGATTGCG
TTTGAGTTGGGAGGGACGATGAGTGTGTTTATGTGCATGCGCCTGTATTA
AAGAGAAAAAGAGGGAGGGAGGGAGTGTATATGTGTGTGTGTGAAAGAGA
CGGAAAGATTAAGATGGGGCATGGAGAAAGGGAGAGAGAGAGAATGAGAG
AGGACAGAAAGGACAGACACAAAAACGGCGATTAGACACAAAGGCCGATT
GTACGGCCAAGAGAAGTCCATCGGTAGATAAAGAAAGCGACCCGGCTACA
TAAAACCAAGGGAGGGAAACTCCACGGTCGGTCTGTCGGTCATTTTAAAA
TATATTCAGGCGTCT

protein sequence of jgi.p|Nanoce1779_2|126204

>mRNA_6737-protein ID=mRNA_6737-protein|Name=jgi.p|Nanoce1779_2|126204|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MYWQSHPILFPFLFLLAFLALLPTPSSSSAWDPHPWPSTPPYVEGWYVRL
TSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNP
PLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIK
QEINNMMLSSSSSSSSLSSSSSSPFTTMTAVQEGPLLFLHITLPTARFLA
QIEVSPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEG
AREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPS
SVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEG
RARFVLEGWGEEEGGREEEERKRMMRGAAPGAMAEKREEEEEEEEEEEKK
GGSGPGKIVASALFPPSPLTPRRRRLVLELTFPLGSAACLSGPTGKGFEK
LCQESFQGEARLIASVMKGGGREEVAREVIMERIAFELGGTMSVFMCMRL
Y*

mRNA from alignment at scaffold_18:580845..583039+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6737 ID=mRNA_6737|Name=jgi.p|Nanoce1779_2|126204|organism=Nannochloropsis oceanica|type=mRNA|length=2195bp|location=Sequence derived from alignment at scaffold_18:580845..583039+ (Nannochloropsis oceanica)
GTAAACCGATGCTGGTCGCTCCCTCTCTCGTCTTTTTCATGTTCTGCTCT
GCCTGCAACAAAATGCAAAGTCATTCAAAACGGACATCGGCGTCGGCACC
ACGCGAAACCACACACTAAGCATACAAAGTACATGTCCGACCCTGTGGAA
AATCAGCCGTCTCCATCCGTGCGGTCATTCATCAGCAAAGCTCTCTCCTA
CCCACCTCTGCCCCCATAATAATCAAATTACAGACCCGCGTTACCATGTA
CTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGCCTTTC
TCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCCACCCC
TGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTCACTAG
CTTGGACACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTTGCTGC
CCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCCTCCAC
GGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCGCCGTT
GGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAAGTCAC
CGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCCCTTCT
CATCACAACTCCGATAATCTTACCGCCGACACCGAGGCCATCAAGCAAGA
AATCAATAATATGATGCTTTCCTCCTCCTCGTCGTCCTCCTCCCTCTCCT
CCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGGGCCCC
TTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCCCAAAT
CGAGGTTTCTCCCTGGGCGTACGACGGCTCTCCACGTCCTCACAGCTGGA
CGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCCTCTCC
TCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGCGCGAG
GGAGGGAGGGAAGGTGATGGAGAGTCGCCACGGGCTTGTGCATCTCGAGA
AGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGGGCGTG
ACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCCTCGGT
GGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTACTCATT
TCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCAAGCCG
GTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGGAGGGC
GAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGAGGAGG
AGGAGAGGAAGAGGATGATGCGTGGTGCTGCCCCGGGTGCAATGGCTGAG
AAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGGAGG
GAGTGGCCCTGGCAAGATTGTTGCGAGTGCGCTTTTCCCTCCCTCTCCTT
TGACCCCTCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGTTAGGC
AGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAACTGTG
CCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGATGAAGG
GGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGATTATGGAACGGATTGCG
TTTGAGTTGGGAGGGACGATGAGGTGTGAGGGGAAGTGTGAGAATGAGGG
GAAGTAGGAGGAAAGTGGGAAGATGAGGAAGGGAAAGTGGATGAGACGGT
GTAAAGAAGGAAAAATATGAAGGTGTGTTCATGTGCGTGCGCCTGAGTAA
AGAGAAAAGAGAGGGGGAGGGAGAGGAGTGTGTTTATGTGCATGCGCCTG
TATTAAAGAGAAAAAGAGGGAGGGAGGGAGTGTATATGTGTGTGTGTGAA
AGAGACGGAAAGATTAAGATGGGGCATGGAGAAAGGGAGAGAGAGAGAAT
GAGAGAGGGTCCAAGAGAGTGACAAAGAGAGAGACAGAAAGGACAGACAC
AAAAACGGCGATTAGACACAAAGGCCGATTGTACGGCCAAGAGAAGTCCA
TCGGTAGATAAAGAAAGCGACCCGGCTACATAAAACCAAGGGAGGGAAAC
TCCACGGTCGGTCTGTCGGTCATTTTAAAATATATTCAGGCGTCT

Coding sequence (CDS) from alignment at scaffold_18:580845..583039+

>mRNA_6737 ID=mRNA_6737|Name=jgi.p|Nanoce1779_2|126204|organism=Nannochloropsis oceanica|type=CDS|length=3012bp|location=Sequence derived from alignment at scaffold_18:580845..583039+ (Nannochloropsis oceanica)
ATGTACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC
CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC
ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC
ACTAGCTTGGACACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT
GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC
TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG
CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA
GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC
CTTCTCATCACAACTCCGATAATCTTACCGCCGACACCGAGGCCATCAAG
CAAGAAATCAATAATATGATGCTTTCCTCCTCCTCGTCGTCCTCCTCCCT
CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG
GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC
CAAATCGAGGTTTCTCCCTGGGCGTACGACGGCTCTCCACGTCCTCACAG
CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC
TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC
GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGCCACGGGCTTGTGCATCT
CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG
GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC
TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC
TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA
AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG
AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA
GGAGGAGGAGAGGAAGAGGATGATGCGTGGTGCTGCCCCGGGTGCAATGG
CTGAGAAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAG
GGAGGGAGTGGCCCTGGCAAGATTGTTGCGAGTGCGCTTTTCCCTCCCTC
TCCTTTGACCCCTCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT
TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA
CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT
GAAGGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGATTATGGAACGGA
TTGCGTTTGAGTTGGGAGGGACGATGAGTGTGTTTATGTGCATGCGCCTG
TATTAAATGTACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCT
CCTCGCCTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGG
ACCCCCACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTC
CGTCTCACTAGCTTGGACACGTCCGACACTCTAGGGGTTATCTTCGGTGC
CTCCTTGCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCG
CGATCCTCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGG
AACCCGCCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACAT
TACCAAGTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCC
GCACCCCTTCTCATCACAACTCCGATAATCTTACCGCCGACACCGAGGCC
ATCAAGCAAGAAATCAATAATATGATGCTTTCCTCCTCCTCGTCGTCCTC
CTCCCTCTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCC
AGGAGGGCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTT
CTTGCCCAAATCGAGGTTTCTCCCTGGGCGTACGACGGCTCTCCACGTCC
TCACAGCTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCC
ACACCCTCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCA
GAGGGCGCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGCCACGGGCTTGT
GCATCTCGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGG
CGCAGGGCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTC
CCTTCCTCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAAT
ATTTACTCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGG
ACTTCAAGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGT
GAAGGGAGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGG
GAGGGAGGAGGAGGAGAGGAAGAGGATGATGCGTGGTGCTGCCCCGGGTG
CAATGGCTGAGAAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
AAGAAGGGAGGGAGTGGCCCTGGCAAGATTGTTGCGAGTGCGCTTTTCCC
TCCCTCTCCTTTGACCCCTCGACGTCGGCGGCTCGTGCTGGAATTAACGT
TTCCGTTAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTT
GAAAAACTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTC
AGTGATGAAGGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGATTATGG
AACGGATTGCGTTTGAGTTGGGAGGGACGATGAGTGTGTTTATGTGCATG
CGCCTGTATTAA

Synonyms

Publications