Properties
| Property Name | Value |
|---|
| TranscriptId | 597730 |
| Track | FilteredModels2 |
| ProteinId | 597644 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:387014..388883 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6663 ID=mRNA_6663|Name=jgi.p|Nanoce1779_2|597644|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
ACAGGAAAGAAATACCACAGCACCATGTTCTTGCGCGCATGCCTTTCCTT
CGCTTCACCATCCTACTTCTCCCCCGCCGCTGCCCTCCACCTGCGGCGTG
CCACCGTCGTCTCGGTCTCCTCCTCTTCCCTGCAACCGTCTCCCAACAAG
CAGCAACGTCGGTCCTTTGCCGGTTCGTCGAATAAATACGACATCAAGAA
GGTGGGCGTTGTGGGCTTGGGACTGATGGGACATGGTATTGGCCTAGTGA
GCGCACAGGCGGGGTATGAAGTGATTGCCGTCGAAGCGCAAGCTGCGGCG
TTGGAGTCGGGCAAGAAGCGGATGGACACCTCGTTGACCAAGCTTTTAAG
CAAGGCCGTGGAGAAGGGAAAGATGACAAAGGAGGCGGCAGAATTAGAGA
AAAAAGCGGTTGAGGGACGGATAACTTATTCCTTGGACGTGAAGTCGTTG
AAAGATGTTGATTTGGTGGTGGAGGCCATCGTGGAGAATTTGGACGTCAA
AATCCCCTTCTACAAGCATCTAGGCAGTCTGGTCAAGCCCAATGCCATCT
TTGGGAGCAATACCTCTTCTTTAAAAATAAGTGATTTTGCTGATCCTTCC
GGTCGACCCGAAAAATTCGTGGGATTACATTTCTTTAACCCTGTGCAACT
GATGCGCTTGGTGGAGATCGTAAAGCTCGACAAGACGGAGCAGGGAGTGT
TTGAAGCCGTGCAGGGGTACGTGAAACGAATTGGCAAGACAGCTGTGACA
TGTAAGGACACTCCGGGATTTATTGTCAACAGATTGTTGGTGCCGGCCCT
GGTGCAAGCAATGCTCATGAAGGAGCGAGGGGACGCAAGCGTGGAAGACA
TTGATGTGGCTATGCAGCTGGGCGCGGGTCACCCTATGGGGCCATTGCAT
CTGGCGGACTACATCGGCCTCGACACCTGCCTCTTCATTCTCGAGGGCTG
GGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCGTGCCGTCCTCCCTGC
GTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAGCGGGGAGGGCTTC
TACATGTGGCAGGGGGATAAAATAGTAAAGCCGGCGATGTGAGGAGAGAG
GGAGGGAGGGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|597644 >mRNA_6663-protein ID=mRNA_6663-protein|Name=jgi.p|Nanoce1779_2|597644|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MFLRACLSFASPSYFSPAAALHLRRATVVSVSSSSLQPSPNKQQRRSFAG
SSNKYDIKKVGVVGLGLMGHGIGLVSAQAGYEVIAVEAQAAALESGKKRM
DTSLTKLLSKAVEKGKMTKEAAELEKKAVEGRITYSLDVKSLKDVDLVVE
AIVENLDVKIPFYKHLGSLVKPNAIFGSNTSSLKISDFADPSGRPEKFVG
LHFFNPVQLMRLVEIVKLDKTEQGVFEAVQGYVKRIGKTAVTCKDTPGFI
VNRLLVPALVQAMLMKERGDASVEDIDVAMQLGAGHPMGPLHLADYIGLD
TCLFILEGWVKKYPDEPAFLVPSSLRTLVSQGKLGRKSGEGFYMWQGDKI
VKPAM* back to topmRNA from alignment at scaffold_18:387014..388883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6663 ID=mRNA_6663|Name=jgi.p|Nanoce1779_2|597644|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp|location=Sequence derived from alignment at scaffold_18:387014..388883- (Nannochloropsis oceanica)
ACAGGAAAGAAATACCACAGCACCATGTTCTTGCGCGCATGCCTTTCCTT
CGCTTCACCATCCTACTTCTCCCCCGCCGCTGCCCTCCACCTGCGGCGTG
CCACCGTCGTCTCGGTCTCCTCCTCTTCCCTGCAACCGTCTCCCAACAAG
CAGCAACGTCGGTCCTTTGCCGGTTCGTCGAATAAATACGACATCAAGAA
GGTGGGCGTTGTGGGCTTGGGACTGATGGGACATGGTATTGGCCTAGTGA
GCGCACAGGCGGGGTATGAAGTGATTGCCGTCGAAGCGCAAGCTGCGGCG
TTGGAGTCGGGCAAGAAGCGGATGGACACCTCGTTGACCAAGCTTTTAAG
CAAGGCCGTGGAGAAGGGAAAGATGACAAAGGAGGCGGCAGAATTAGAGA
AAAAAGCGGTTGAGGGACGGATAACTTATTCCTTGGACGTGAAGTCGTTG
AAAGATGTTGATTTGGTGGTGGAGGCCATCGTGGAGAATTTGGGTGAGGA
AACTAACATCATGGTGGGAAGAAAGTTGGATGGAGAGTCCTGGGATGGCT
AAGTGGGGCATTTGCATGCATTTTTCCGGCTGCACCATTCCATGCTCTTT
CTTAAATAACGCAAAATGTGCCGCGCAGTCATTCACTAACTCTCTCTTCC
CCCCTCCCTCCCCTCCTTCCCTTCCAAGACGTCAAAATCCCCTTCTACAA
GCATCTAGGCAGTCTGGTCAAGCCCAATGCCATCTTTGGGAGCAATACCT
CTTCTTTAAAAATAAGTGATTTTGCTGATCCTTCCGGTCGACCCGAAAAA
TTCGTGGGATTACATTTCTTTAACCCTGTGCAACTGATGCGCTTGGTGGA
GATCGTAAAGCTCGACAAGACGGAGCAGGGAGTGTTTGAAGCCGTGCAGG
GGTACGTGAAACGAATTGGCAAGACAGCTGTGACATGTAAGGACACTCCG
GGATTTATTGTCAACAGGTAAGGAGGGGGAGGGAGGGAGGGAGGGAGGGA
GAACGAAAGCGCAACGAGCACAACAACGCCCTGATATCTTTCTTCTCGGC
ACAACACGTAGATTTGTTTCTTGAGTGAAGTTGTTATGGAAATGTTAAGT
GATACATTTTTGCGTGAACTTTTTCTTATTCATCAACCAAGTCTGAGTCA
AAGAAATGTCATCTGGCGGATTCAACCCTCCTCCCTCCCTCGTTTCCTCT
TTCCCTTCCTCCTTTCTAGGTAAATCATCCCTGCCCCAGTGCAAGCGCTG
TTGATGAAGGAGCGAGGAGAAGCAAGCAATCACGCGACTTAAAGCTTCCT
CTGTCCCTCCCTCCTCCCGACCCCCTCTCAATCCCTCCCTCGGCACAACC
CCCTACAAAACAGATTGTTGGTGCCGGCCCTGGTGCAAGCAATGCTCATG
AAGGAGCGAGGGGACGCAAGCGTGGAAGACATTGATGTGGCTATGCAGCT
GGGCGCGGGTCACCCTATGGGGCCATTGCATCTGGTAGGGAGGGAGGGAG
GAGAGGGAGGAATGGGAAGGAGGGAGGGAGGGAAGGAAGGAAGGTGGTAA
GAAGGTATATTTCTCGCGGGAGCACGTCATGTGCAGAGAGTCGTACGCCG
CCCTTTCAACCCTCCCTCCCTCCCTCCCTTCCTTCCTCTCTCCCTTCCTT
TTTCAGGCGGACTACATCGGCCTCGACACCTGCCTCTTCATTCTCGAGGG
CTGGGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCGTGCCGTCCTCCC
TGCGTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAGCGGGGAGGGC
TTCTACATGTGGCAGGGGGATAAAATAGTAAAGCCGGCGATGTGAGGAGA
GAGGGAGGGAGGGAGGGAGG back to topCoding sequence (CDS) from alignment at scaffold_18:387014..388883- >mRNA_6663 ID=mRNA_6663|Name=jgi.p|Nanoce1779_2|597644|organism=Nannochloropsis oceanica|type=CDS|length=4272bp|location=Sequence derived from alignment at scaffold_18:387014..388883- (Nannochloropsis oceanica)
GCGGACTACATCGGCCTCGACACCTGCCTCTTCATTCTCGAGGGCTGGGT
CAAAAAATACCCGGACGAGCCTGCCTTTCTCGTGCCGTCCTCCCTGCGTA
CCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAGCGGGGAGGGCTTCTAC
ATGTGGCAGGGGGATAAAATAGTAAAGCCGGCGATGTGAATTGTTGGTGC
CGGCCCTGGTGCAAGCAATGCTCATGAAGGAGCGAGGGGACGCAAGCGTG
GAAGACATTGATGTGGCTATGCAGCTGGGCGCGGGTCACCCTATGGGGCC
ATTGCATCTGACGTCAAAATCCCCTTCTACAAGCATCTAGGCAGTCTGGT
CAAGCCCAATGCCATCTTTGGGAGCAATACCTCTTCTTTAAAAATAAGTG
ATTTTGCTGATCCTTCCGGTCGACCCGAAAAATTCGTGGGATTACATTTC
TTTAACCCTGTGCAACTGATGCGCTTGGTGGAGATCGTAAAGCTCGACAA
GACGGAGCAGGGAGTGTTTGAAGCCGTGCAGGGGTACGTGAAACGAATTG
GCAAGACAGCTGTGACATGTAAGGACACTCCGGGATTTATTGTCAACAGA
TGTTCTTGCGCGCATGCCTTTCCTTCGCTTCACCATCCTACTTCTCCCCC
GCCGCTGCCCTCCACCTGCGGCGTGCCACCGTCGTCTCGGTCTCCTCCTC
TTCCCTGCAACCGTCTCCCAACAAGCAGCAACGTCGGTCCTTTGCCGGTT
CGTCGAATAAATACGACATCAAGAAGGTGGGCGTTGTGGGCTTGGGACTG
ATGGGACATGGTATTGGCCTAGTGAGCGCACAGGCGGGGTATGAAGTGAT
TGCCGTCGAAGCGCAAGCTGCGGCGTTGGAGTCGGGCAAGAAGCGGATGG
ACACCTCGTTGACCAAGCTTTTAAGCAAGGCCGTGGAGAAGGGAAAGATG
ACAAAGGAGGCGGCAGAATTAGAGAAAAAAGCGGTTGAGGGACGGATAAC
TTATTCCTTGGACGTGAAGTCGTTGAAAGATGTTGATTTGGTGGTGGAGG
CCATCGTGGAGAATTTGGGCGGACTACATCGGCCTCGACACCTGCCTCTT
CATTCTCGAGGGCTGGGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCG
TGCCGTCCTCCCTGCGTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAG
AGCGGGGAGGGCTTCTACATGTGGCAGGGGGATAAAATAGTAAAGCCGGC
GATGTGAATTGTTGGTGCCGGCCCTGGTGCAAGCAATGCTCATGAAGGAG
CGAGGGGACGCAAGCGTGGAAGACATTGATGTGGCTATGCAGCTGGGCGC
GGGTCACCCTATGGGGCCATTGCATCTGACGTCAAAATCCCCTTCTACAA
GCATCTAGGCAGTCTGGTCAAGCCCAATGCCATCTTTGGGAGCAATACCT
CTTCTTTAAAAATAAGTGATTTTGCTGATCCTTCCGGTCGACCCGAAAAA
TTCGTGGGATTACATTTCTTTAACCCTGTGCAACTGATGCGCTTGGTGGA
GATCGTAAAGCTCGACAAGACGGAGCAGGGAGTGTTTGAAGCCGTGCAGG
GGTACGTGAAACGAATTGGCAAGACAGCTGTGACATGTAAGGACACTCCG
GGATTTATTGTCAACAGATGTTCTTGCGCGCATGCCTTTCCTTCGCTTCA
CCATCCTACTTCTCCCCCGCCGCTGCCCTCCACCTGCGGCGTGCCACCGT
CGTCTCGGTCTCCTCCTCTTCCCTGCAACCGTCTCCCAACAAGCAGCAAC
GTCGGTCCTTTGCCGGTTCGTCGAATAAATACGACATCAAGAAGGTGGGC
GTTGTGGGCTTGGGACTGATGGGACATGGTATTGGCCTAGTGAGCGCACA
GGCGGGGTATGAAGTGATTGCCGTCGAAGCGCAAGCTGCGGCGTTGGAGT
CGGGCAAGAAGCGGATGGACACCTCGTTGACCAAGCTTTTAAGCAAGGCC
GTGGAGAAGGGAAAGATGACAAAGGAGGCGGCAGAATTAGAGAAAAAAGC
GGTTGAGGGACGGATAACTTATTCCTTGGACGTGAAGTCGTTGAAAGATG
TTGATTTGGTGGTGGAGGCCATCGTGGAGAATTTGGGCGGACTACATCGG
CCTCGACACCTGCCTCTTCATTCTCGAGGGCTGGGTCAAAAAATACCCGG
ACGAGCCTGCCTTTCTCGTGCCGTCCTCCCTGCGTACCTTGGTTAGCCAA
GGCAAGCTGGGGAGGAAGAGCGGGGAGGGCTTCTACATGTGGCAGGGGGA
TAAAATAGTAAAGCCGGCGATGTGAATTGTTGGTGCCGGCCCTGGTGCAA
GCAATGCTCATGAAGGAGCGAGGGGACGCAAGCGTGGAAGACATTGATGT
GGCTATGCAGCTGGGCGCGGGTCACCCTATGGGGCCATTGCATCTGACGT
CAAAATCCCCTTCTACAAGCATCTAGGCAGTCTGGTCAAGCCCAATGCCA
TCTTTGGGAGCAATACCTCTTCTTTAAAAATAAGTGATTTTGCTGATCCT
TCCGGTCGACCCGAAAAATTCGTGGGATTACATTTCTTTAACCCTGTGCA
ACTGATGCGCTTGGTGGAGATCGTAAAGCTCGACAAGACGGAGCAGGGAG
TGTTTGAAGCCGTGCAGGGGTACGTGAAACGAATTGGCAAGACAGCTGTG
ACATGTAAGGACACTCCGGGATTTATTGTCAACAGATGTTCTTGCGCGCA
TGCCTTTCCTTCGCTTCACCATCCTACTTCTCCCCCGCCGCTGCCCTCCA
CCTGCGGCGTGCCACCGTCGTCTCGGTCTCCTCCTCTTCCCTGCAACCGT
CTCCCAACAAGCAGCAACGTCGGTCCTTTGCCGGTTCGTCGAATAAATAC
GACATCAAGAAGGTGGGCGTTGTGGGCTTGGGACTGATGGGACATGGTAT
TGGCCTAGTGAGCGCACAGGCGGGGTATGAAGTGATTGCCGTCGAAGCGC
AAGCTGCGGCGTTGGAGTCGGGCAAGAAGCGGATGGACACCTCGTTGACC
AAGCTTTTAAGCAAGGCCGTGGAGAAGGGAAAGATGACAAAGGAGGCGGC
AGAATTAGAGAAAAAAGCGGTTGAGGGACGGATAACTTATTCCTTGGACG
TGAAGTCGTTGAAAGATGTTGATTTGGTGGTGGAGGCCATCGTGGAGAAT
TTGGGCGGACTACATCGGCCTCGACACCTGCCTCTTCATTCTCGAGGGCT
GGGTCAAAAAATACCCGGACGAGCCTGCCTTTCTCGTGCCGTCCTCCCTG
CGTACCTTGGTTAGCCAAGGCAAGCTGGGGAGGAAGAGCGGGGAGGGCTT
CTACATGTGGCAGGGGGATAAAATAGTAAAGCCGGCGATGTGAATTGTTG
GTGCCGGCCCTGGTGCAAGCAATGCTCATGAAGGAGCGAGGGGACGCAAG
CGTGGAAGACATTGATGTGGCTATGCAGCTGGGCGCGGGTCACCCTATGG
GGCCATTGCATCTGACGTCAAAATCCCCTTCTACAAGCATCTAGGCAGTC
TGGTCAAGCCCAATGCCATCTTTGGGAGCAATACCTCTTCTTTAAAAATA
AGTGATTTTGCTGATCCTTCCGGTCGACCCGAAAAATTCGTGGGATTACA
TTTCTTTAACCCTGTGCAACTGATGCGCTTGGTGGAGATCGTAAAGCTCG
ACAAGACGGAGCAGGGAGTGTTTGAAGCCGTGCAGGGGTACGTGAAACGA
ATTGGCAAGACAGCTGTGACATGTAAGGACACTCCGGGATTTATTGTCAA
CAGATGTTCTTGCGCGCATGCCTTTCCTTCGCTTCACCATCCTACTTCTC
CCCCGCCGCTGCCCTCCACCTGCGGCGTGCCACCGTCGTCTCGGTCTCCT
CCTCTTCCCTGCAACCGTCTCCCAACAAGCAGCAACGTCGGTCCTTTGCC
GGTTCGTCGAATAAATACGACATCAAGAAGGTGGGCGTTGTGGGCTTGGG
ACTGATGGGACATGGTATTGGCCTAGTGAGCGCACAGGCGGGGTATGAAG
TGATTGCCGTCGAAGCGCAAGCTGCGGCGTTGGAGTCGGGCAAGAAGCGG
ATGGACACCTCGTTGACCAAGCTTTTAAGCAAGGCCGTGGAGAAGGGAAA
GATGACAAAGGAGGCGGCAGAATTAGAGAAAAAAGCGGTTGAGGGACGGA
TAACTTATTCCTTGGACGTGAAGTCGTTGAAAGATGTTGATTTGGTGGTG
GAGGCCATCGTGGAGAATTTGG back to top
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