jgi.p|Nanoce1779_2|651801, mRNA_6731 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651801
Unique Name	mRNA_6731
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	738
Alignment location	scaffold_18:568037..568774 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651887
Track	FilteredModels2
ProteinId	651801

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:568037..568774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651801	gene_6731	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651801	mRNA_6731-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6731	CDS_6731	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:568037..568774+
coding sequence from alignment at scaffold_18:568037..568774+

mRNA sequence

>mRNA_6731 ID=mRNA_6731|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
ATGCAGCAGCCATCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
GCCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCGGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGGAAGTCTTTGAATGGAAAGATAAAGAATCAATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCAAGCTAAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA

protein sequence of jgi.p|Nanoce1779_2|651801

>mRNA_6731-protein ID=mRNA_6731-protein|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MQQPSVQKIAERPATLTPEPAIFCIKTFMPHPGHEQDLEVRLKEHWDALH
AAGLTAPNQEPLFLRSRAGRVLEVFEWKDKESIEEAHRRSELHKTWKNLL
DIATMVPLASLGESNEPYAHFHVLIPGVLQTTGAMAKIVAVKPHTGKLND
LVAKLKKHDVALYKAGYTTERPVMHMRGEKEGHLVEIAEWTSLEKVKEAQ
SSEIVQGLWNDFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTLSE*

mRNA from alignment at scaffold_18:568037..568774+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6731 ID=mRNA_6731|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at scaffold_18:568037..568774+ (Nannochloropsis oceanica)
ATGCAGCAGCCATCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
GCCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCGGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGGAAGTCTTTGAATGGAAAGATAAAGAATCAATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCAAGCTAAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA

Coding sequence (CDS) from alignment at scaffold_18:568037..568774+

>mRNA_6731 ID=mRNA_6731|Name=jgi.p|Nanoce1779_2|651801|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_18:568037..568774+ (Nannochloropsis oceanica)
ATGCAGCAGCCATCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
GCCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCGGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGGAAGTCTTTGAATGGAAAGATAAAGAATCAATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCAAGCTAAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA

Synonyms

Publications