jgi.p|Nanoce1779_2|636367, mRNA_1127 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636367
Unique NamemRNA_1127
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length357
Alignment locationscaffold_2:1296729..1297404 -

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Properties
Property NameValue
TranscriptId636453
TrackFilteredModels2
ProteinId636367
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1296729..1297404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636367gene_1127Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636367mRNA_1127-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1127CDS_1127Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1127 ID=mRNA_1127|Name=jgi.p|Nanoce1779_2|636367|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGACGTCCTCCAATTTCGTTGTTTTGTGTTGGATGAGGTTGAGTTTGAA
AGAGGAAGCAATTGCCCTAGCCGTCCAGCATCGGCGGTGGGACGCCCAGG
ACGAGGACGGGGTGCAAGGAACGCTGTGTGCGGACGCTCGAGGCCTGTGC
GTCCAAGCAAGTGGTACGGCAGATCCGAATACCGCTGGCTTCTTCACGGC
CTTGGTTCGCCGCGCTGCCACTCTGGCAGGACCTCCGATAGACGAGAGTA
GCGGGGAAAGGGAAGGGTTGACAGTGTCTATTGAGACGGAGAAGCTCTGT
ATCATTATCAAGGAGTATGACGACCTCACCCTGGCCGTGTACCACGCCAG
GAGATAG
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protein sequence of jgi.p|Nanoce1779_2|636367

>mRNA_1127-protein ID=mRNA_1127-protein|Name=jgi.p|Nanoce1779_2|636367|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTSSNFVVLCWMRLSLKEEAIALAVQHRRWDAQDEDGVQGTLCADARGLC
VQASGTADPNTAGFFTALVRRAATLAGPPIDESSGEREGLTVSIETEKLC
IIIKEYDDLTLAVYHARR*
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mRNA from alignment at scaffold_2:1296729..1297404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1127 ID=mRNA_1127|Name=jgi.p|Nanoce1779_2|636367|organism=Nannochloropsis oceanica|type=mRNA|length=676bp|location=Sequence derived from alignment at scaffold_2:1296729..1297404- (Nannochloropsis oceanica)
ATGACGTCCTCCAATTTCGTTGTTTTGTGTTGGATGAGGTTGAGTTTGAA
AGAGGAAGCAATTGCCCTAGCCGTCCAGCATCGGCGGTGGGGTACGTTGG
GACCTCCCCTCTCTTACAATCTCAATTTCTCACACAACACCACGAATAAT
CCACACAGCGCCGCTCTGGAAAATCCATCAGCAGCATAATAATGTCCTAT
ACGACACCCTTCGCAGACGCCCAGGACGAGGACGGGGTGCAAGGAACGCT
GTGTGCGGACGCTCGAGGCCTGTGCGTCCAAGCAAGTGGTACGGCAGATC
CGAATACCGCTGGCTTCTTCACGGCCTTGGTTCGCCGCGCTGCCACTCTG
GCAGGACCTCCGATAGACGAGAGTAGCGGGGAAAGGGAAGGGTTGACAGT
GTCTATTGAGACGGAGAAGCTGTAAGTTTGTCGTGGTCGGGAGGACGGGC
GGTGGGCGGGAGGGTGGCAGGAAGACAAGAGGATGGTTGGATCGATGGCA
CCCATCAAGGCTGAAAACCTCTTCCTCATGGCTTCGTTTCACTTTACTAA
GAGTCGAGATCTAATATTCTCACATTCATTTATCAACATCTCGCCCTCCT
ACCTCTGCCACTCAGCTGTATCATTATCAAGGAGTATGACGACCTCACCC
TGGCCGTGTACCACGCCAGGAGATAG
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Coding sequence (CDS) from alignment at scaffold_2:1296729..1297404-

>mRNA_1127 ID=mRNA_1127|Name=jgi.p|Nanoce1779_2|636367|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_2:1296729..1297404- (Nannochloropsis oceanica)
CTGTATCATTATCAAGGAGTATGACGACCTCACCCTGGCCGTGTACCACG
CCAGGAGATAGACGCCCAGGACGAGGACGGGGTGCAAGGAACGCTGTGTG
CGGACGCTCGAGGCCTGTGCGTCCAAGCAAGTGGTACGGCAGATCCGAAT
ACCGCTGGCTTCTTCACGGCCTTGGTTCGCCGCGCTGCCACTCTGGCAGG
ACCTCCGATAGACGAGAGTAGCGGGGAAAGGGAAGGGTTGACAGTGTCTA
TTGAGACGGAGAAGCTATGACGTCCTCCAATTTCGTTGTTTTGTGTTGGA
TGAGGTTGAGTTTGAAAGAGGAAGCAATTGCCCTAGCCGTCCAGCATCGG
CGGTGGGCTGTATCATTATCAAGGAGTATGACGACCTCACCCTGGCCGTG
TACCACGCCAGGAGATAGACGCCCAGGACGAGGACGGGGTGCAAGGAACG
CTGTGTGCGGACGCTCGAGGCCTGTGCGTCCAAGCAAGTGGTACGGCAGA
TCCGAATACCGCTGGCTTCTTCACGGCCTTGGTTCGCCGCGCTGCCACTC
TGGCAGGACCTCCGATAGACGAGAGTAGCGGGGAAAGGGAAGGGTTGACA
GTGTCTATTGAGACGGAGAAGCTATGACGTCCTCCAATTTCGTTGTTTTG
TGTTGGATGAGGTTGAGTTTGAAAGAGGAAGCAATTGCCCTAGCCGTCCA
GCATCGGCGGTGGGCTGTATCATTATCAAGGAGTATGACGACCTCACCCT
GGCCGTGTACCACGCCAGGAGATAGACGCCCAGGACGAGGACGGGGTGCA
AGGAACGCTGTGTGCGGACGCTCGAGGCCTGTGCGTCCAAGCAAGTGGTA
CGGCAGATCCGAATACCGCTGGCTTCTTCACGGCCTTGGTTCGCCGCGCT
GCCACTCTGGCAGGACCTCCGATAGACGAGAGTAGCGGGGAAAGGGAAGG
GTTGACAGTGTCTATTGAGACGGAGAAGCTATGACGTCCTCCAATTTCGT
TGTTTTGTGTTGGATGAGGTTGAGTTTGAAAGAGGAAGCAATTGCCCTAG
CCGTCCAGCATCGGCGGTGGG
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Synonyms
Publications