jgi.p|Nanoce1779_2|601440, mRNA_8285 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601440
Unique NamemRNA_8285
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1222
Alignment locationscaffold_23:269922..271143 +

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Properties
Property NameValue
TranscriptId601526
TrackFilteredModels2
ProteinId601440
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:269922..271143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601440gene_8285Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601440mRNA_8285-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8285CDS_8285Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8285 ID=mRNA_8285|Name=jgi.p|Nanoce1779_2|601440|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp
ACAGGGAATAAGAATATTACGTCTCATACCTTGTGTGCGCGCCCACACGA
TGACCGGCACTCCCGACACTTCTTCTCCTCCCTCCGCCGGCCCGCGAGAG
CACCAAGACTTGAAGAAGGAATCCTTGAGCTTCGTCGTCCTTGAACAAGA
CCCGGACGCAAAGGAAGCCTTGTGCTTCGCTGTCATCGAGGGGTTTCCTA
CTATGATCTTCTCCAAAGATGCCCAACCCGAAACTCGCCATGACGATCGC
CTTGGCTTTCGCTATGTCTATTTCAATGCCTTGATGGACCATGCGAGCGG
CCTGAAGCGCTTGGACATGATCGGGCAGAATGCCTACGACCATTTCAACC
CCACCGATGCCCAGCAGTATTTTGTAGACGATCGACAAGTCATGGCTCTC
CCTCCGAATCGAGACGAAGAGGCTGCTGTTTTTAAAATTTACGAGCCTTG
GGTAGTCCCGACAGGGAAACACGTGAATCACACGCGAAAAAAGAACCTGG
GGGATGCTTACATGCTTGGGACGTTTTTGGTTGTGGACGATGTGCACTTA
GGAAAGGTTCAAGAGAAACGGCGTCCCGTGCTACTGCCTCTGTCGGAGGC
TCCAGCGCGCCCCGCGTCTTATTTTTTTTCTGAGGCTTTGGAGCATTTGC
CTGTGCCCGTGCTGGTAGTATCGGGGGCATCGTCGTCTCCTTCTTCCTCG
TCCTCCTTCTCATCCTCCCCTCCGGCAATCCTTTTGAAGAATCGGGCCTA
TCACCATGCGTTTGGCTCTCTTGAGACTGCGACTGCTGCAGCCGCAAGCG
AGAATGAGGGAGGCGGAGGGACAGCTGTTGACAAGTACCTCCTCGGCCTT
AACTCGTTTGCAGTGCCGGGGGAGATATTGGAACGGAGCAACGTTGCGTT
GGGTCGAGGAGACAGAGGACGAGCAAGGCAACATGGGGAGGGGCAACGAG
GGGAGGCAGAACAAATACCCTTATGGCACATTATGCAACGGCCTTTGCGT
TGCGCGGAAAGGGAGGGAGAGCGCGGAAATGATACAGGCGACATGATCAT
AGTGTACGTGCTGTGGCCTCAGGGCGATGAAAGGAAGGCAGCGGCTGCCC
ATGCAAAATTAAAATGATCAAGCATGCGAAAGAATCAGCGGCTTCCAGGC
CTTTCAACTTATGGGGAGATAGTATCACATGTAATTTAGCTAGGCACCAA
CAGCGACATGAACAAGAAAGAC
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protein sequence of jgi.p|Nanoce1779_2|601440

>mRNA_8285-protein ID=mRNA_8285-protein|Name=jgi.p|Nanoce1779_2|601440|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MTGTPDTSSPPSAGPREHQDLKKESLSFVVLEQDPDAKEALCFAVIEGFP
TMIFSKDAQPETRHDDRLGFRYVYFNALMDHASGLKRLDMIGQNAYDHFN
PTDAQQYFVDDRQVMALPPNRDEEAAVFKIYEPWVVPTGKHVNHTRKKNL
GDAYMLGTFLVVDDVHLGKVQEKRRPVLLPLSEAPARPASYFFSEALEHL
PVPVLVVSGASSSPSSSSSFSSSPPAILLKNRAYHHAFGSLETATAAAAS
ENEGGGGTAVDKYLLGLNSFAVPGEILERSNVALGRGDRGRARQHGEGQR
GEAEQIPLWHIMQRPLRCAEREGERGNDTGDMIIVYVLWPQGDERKAAAA
HAKLK*
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mRNA from alignment at scaffold_23:269922..271143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8285 ID=mRNA_8285|Name=jgi.p|Nanoce1779_2|601440|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp|location=Sequence derived from alignment at scaffold_23:269922..271143+ (Nannochloropsis oceanica)
ACAGGGAATAAGAATATTACGTCTCATACCTTGTGTGCGCGCCCACACGA
TGACCGGCACTCCCGACACTTCTTCTCCTCCCTCCGCCGGCCCGCGAGAG
CACCAAGACTTGAAGAAGGAATCCTTGAGCTTCGTCGTCCTTGAACAAGA
CCCGGACGCAAAGGAAGCCTTGTGCTTCGCTGTCATCGAGGGGTTTCCTA
CTATGATCTTCTCCAAAGATGCCCAACCCGAAACTCGCCATGACGATCGC
CTTGGCTTTCGCTATGTCTATTTCAATGCCTTGATGGACCATGCGAGCGG
CCTGAAGCGCTTGGACATGATCGGGCAGAATGCCTACGACCATTTCAACC
CCACCGATGCCCAGCAGTATTTTGTAGACGATCGACAAGTCATGGCTCTC
CCTCCGAATCGAGACGAAGAGGCTGCTGTTTTTAAAATTTACGAGCCTTG
GGTAGTCCCGACAGGGAAACACGTGAATCACACGCGAAAAAAGAACCTGG
GGGATGCTTACATGCTTGGGACGTTTTTGGTTGTGGACGATGTGCACTTA
GGAAAGGTTCAAGAGAAACGGCGTCCCGTGCTACTGCCTCTGTCGGAGGC
TCCAGCGCGCCCCGCGTCTTATTTTTTTTCTGAGGCTTTGGAGCATTTGC
CTGTGCCCGTGCTGGTAGTATCGGGGGCATCGTCGTCTCCTTCTTCCTCG
TCCTCCTTCTCATCCTCCCCTCCGGCAATCCTTTTGAAGAATCGGGCCTA
TCACCATGCGTTTGGCTCTCTTGAGACTGCGACTGCTGCAGCCGCAAGCG
AGAATGAGGGAGGCGGAGGGACAGCTGTTGACAAGTACCTCCTCGGCCTT
AACTCGTTTGCAGTGCCGGGGGAGATATTGGAACGGAGCAACGTTGCGTT
GGGTCGAGGAGACAGAGGACGAGCAAGGCAACATGGGGAGGGGCAACGAG
GGGAGGCAGAACAAATACCCTTATGGCACATTATGCAACGGCCTTTGCGT
TGCGCGGAAAGGGAGGGAGAGCGCGGAAATGATACAGGCGACATGATCAT
AGTGTACGTGCTGTGGCCTCAGGGCGATGAAAGGAAGGCAGCGGCTGCCC
ATGCAAAATTAAAATGATCAAGCATGCGAAAGAATCAGCGGCTTCCAGGC
CTTTCAACTTATGGGGAGATAGTATCACATGTAATTTAGCTAGGCACCAA
CAGCGACATGAACAAGAAAGAC
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Coding sequence (CDS) from alignment at scaffold_23:269922..271143+

>mRNA_8285 ID=mRNA_8285|Name=jgi.p|Nanoce1779_2|601440|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_23:269922..271143+ (Nannochloropsis oceanica)
ATGACCGGCACTCCCGACACTTCTTCTCCTCCCTCCGCCGGCCCGCGAGA
GCACCAAGACTTGAAGAAGGAATCCTTGAGCTTCGTCGTCCTTGAACAAG
ACCCGGACGCAAAGGAAGCCTTGTGCTTCGCTGTCATCGAGGGGTTTCCT
ACTATGATCTTCTCCAAAGATGCCCAACCCGAAACTCGCCATGACGATCG
CCTTGGCTTTCGCTATGTCTATTTCAATGCCTTGATGGACCATGCGAGCG
GCCTGAAGCGCTTGGACATGATCGGGCAGAATGCCTACGACCATTTCAAC
CCCACCGATGCCCAGCAGTATTTTGTAGACGATCGACAAGTCATGGCTCT
CCCTCCGAATCGAGACGAAGAGGCTGCTGTTTTTAAAATTTACGAGCCTT
GGGTAGTCCCGACAGGGAAACACGTGAATCACACGCGAAAAAAGAACCTG
GGGGATGCTTACATGCTTGGGACGTTTTTGGTTGTGGACGATGTGCACTT
AGGAAAGGTTCAAGAGAAACGGCGTCCCGTGCTACTGCCTCTGTCGGAGG
CTCCAGCGCGCCCCGCGTCTTATTTTTTTTCTGAGGCTTTGGAGCATTTG
CCTGTGCCCGTGCTGGTAGTATCGGGGGCATCGTCGTCTCCTTCTTCCTC
GTCCTCCTTCTCATCCTCCCCTCCGGCAATCCTTTTGAAGAATCGGGCCT
ATCACCATGCGTTTGGCTCTCTTGAGACTGCGACTGCTGCAGCCGCAAGC
GAGAATGAGGGAGGCGGAGGGACAGCTGTTGACAAGTACCTCCTCGGCCT
TAACTCGTTTGCAGTGCCGGGGGAGATATTGGAACGGAGCAACGTTGCGT
TGGGTCGAGGAGACAGAGGACGAGCAAGGCAACATGGGGAGGGGCAACGA
GGGGAGGCAGAACAAATACCCTTATGGCACATTATGCAACGGCCTTTGCG
TTGCGCGGAAAGGGAGGGAGAGCGCGGAAATGATACAGGCGACATGATCA
TAGTGTACGTGCTGTGGCCTCAGGGCGATGAAAGGAAGGCAGCGGCTGCC
CATGCAAAATTAAAATGA
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Synonyms
Publications