jgi.p|Nanoce1779_2|568673, mRNA_8591 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568673
Unique NamemRNA_8591
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length636
Alignment locationscaffold_26:290490..291441 -

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Properties
Property NameValue
TranscriptId568759
TrackFilteredModels2
ProteinId568673
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:290490..291441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568673gene_8591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568673mRNA_8591-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8591CDS_8591Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8591 ID=mRNA_8591|Name=jgi.p|Nanoce1779_2|568673|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
ATGTCCCCCAAGCGCCTAGCCTGGTTGTTGAGTGCATTCAGTAGCTTCAT
TACTGCCTCGTTGAGCTTATCGGCGTTGTATCAATTATTTGAGCAGGCAT
GGGTGATAGAGAATGTGCTGTTCGCAGACGATCGACTCAGTCGCTTTACA
GCCACTTTCTTCATTGCTTTTCTGATGCTTGACTTAGGGTTTGGCATGAG
ATATTACCCTTCTCAAGTCCAGGTTTTGAGTGGTTGGGTGCACCACATAT
TCTACTTGGGAGTGCTGGCATGGGCACTGATCTCTCACTTCACCCTGGGC
TTCTGCTTGTTTTTGCCCTTGGAAATCCCGACCTTTATTCTCGCGGTGGG
AAGTCTGTACCCGCAACGGAGGAGCGACTGGTTGTTTGGATTAACCTTCT
TTATCACACGGATATGCTACCACTTGTTGTTGTTCTTATTGGTCAGGGAG
ATTAAGGACCCCCGGTTGCCGTTGTGGGTTGTGGTGGCGGTGACGTTTTG
GTTGCACATGTACTGGTTTGTGATGTGGGCCAAGGGCTGGGCGAGGAGGA
GGAGGAAATCGGGGAAGGCAGCAGCGGTGGGAGGCTCAGAGATGGAATTT
GTGAGGGATGGGAGGGGAGATATTAAATCATCGTAA
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protein sequence of jgi.p|Nanoce1779_2|568673

>mRNA_8591-protein ID=mRNA_8591-protein|Name=jgi.p|Nanoce1779_2|568673|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MSPKRLAWLLSAFSSFITASLSLSALYQLFEQAWVIENVLFADDRLSRFT
ATFFIAFLMLDLGFGMRYYPSQVQVLSGWVHHIFYLGVLAWALISHFTLG
FCLFLPLEIPTFILAVGSLYPQRRSDWLFGLTFFITRICYHLLLFLLVRE
IKDPRLPLWVVVAVTFWLHMYWFVMWAKGWARRRRKSGKAAAVGGSEMEF
VRDGRGDIKSS*
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mRNA from alignment at scaffold_26:290490..291441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8591 ID=mRNA_8591|Name=jgi.p|Nanoce1779_2|568673|organism=Nannochloropsis oceanica|type=mRNA|length=952bp|location=Sequence derived from alignment at scaffold_26:290490..291441- (Nannochloropsis oceanica)
ATGTCCCCCAAGCGCCTAGCCTGGTTGTTGAGTGCATTCAGTAGCTTCAT
TACTGCCTCGTTGAGCTTATCGGCGTTGTATCAATTATTTGAGCAGGCAT
GGGTGATAGAGAATGTGCTGTTCGCAGACGATCGACTCAGTCGCTTTACA
GCCACTTTCTTCATTGCTTTTCTGATGCTTGACTTAGGGTTTGGCATGAG
GTATGTACTTAGGAGAGAAGGGAGGAGGGATTGGATGGATGGAGGGTGAT
ATGGACGATAGCTTGTACAGTGTCAGGTCTCCGTTTCAACTCAACGCCGT
GGCCCAGGGCCTCTTATTCCCTCACCAACCCCACCCCTCCCTCCCCTTTC
TCCCCTCCACGTATGAAATCCCTGTGAAATTCATCTCTGAAGTGATAAGG
TGCACCATAGACCTCTTGCTTCACCCTGGGCCTCGGTCTTTTTTCTCGCC
CTTCCCTCTCTCCTGCCCTCCCTCCGATCCACCCTCCCTCCCTTCCTCTC
TCCCTCCCTTCCACAGATATTACCCTTCTCAAGTCCAGGTTTTGAGTGGT
TGGGTGCACCACATATTCTACTTGGGAGTGCTGGCATGGGCACTGATCTC
TCACTTCACCCTGGGCTTCTGCTTGTTTTTGCCCTTGGAAATCCCGACCT
TTATTCTCGCGGTGGGAAGTCTGTACCCGCAACGGAGGAGCGACTGGTTG
TTTGGATTAACCTTCTTTATCACACGGATATGCTACCACTTGTTGTTGTT
CTTATTGGTCAGGGAGATTAAGGACCCCCGGTTGCCGTTGTGGGTTGTGG
TGGCGGTGACGTTTTGGTTGCACATGTACTGGTTTGTGATGTGGGCCAAG
GGCTGGGCGAGGAGGAGGAGGAAATCGGGGAAGGCAGCAGCGGTGGGAGG
CTCAGAGATGGAATTTGTGAGGGATGGGAGGGGAGATATTAAATCATCGT
AA
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Coding sequence (CDS) from alignment at scaffold_26:290490..291441-

>mRNA_8591 ID=mRNA_8591|Name=jgi.p|Nanoce1779_2|568673|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_26:290490..291441- (Nannochloropsis oceanica)
ATATTACCCTTCTCAAGTCCAGGTTTTGAGTGGTTGGGTGCACCACATAT
TCTACTTGGGAGTGCTGGCATGGGCACTGATCTCTCACTTCACCCTGGGC
TTCTGCTTGTTTTTGCCCTTGGAAATCCCGACCTTTATTCTCGCGGTGGG
AAGTCTGTACCCGCAACGGAGGAGCGACTGGTTGTTTGGATTAACCTTCT
TTATCACACGGATATGCTACCACTTGTTGTTGTTCTTATTGGTCAGGGAG
ATTAAGGACCCCCGGTTGCCGTTGTGGGTTGTGGTGGCGGTGACGTTTTG
GTTGCACATGTACTGGTTTGTGATGTGGGCCAAGGGCTGGGCGAGGAGGA
GGAGGAAATCGGGGAAGGCAGCAGCGGTGGGAGGCTCAGAGATGGAATTT
GTGAGGGATGGGAGGGGAGATATTAAATCATCGTAAATGTCCCCCAAGCG
CCTAGCCTGGTTGTTGAGTGCATTCAGTAGCTTCATTACTGCCTCGTTGA
GCTTATCGGCGTTGTATCAATTATTTGAGCAGGCATGGGTGATAGAGAAT
GTGCTGTTCGCAGACGATCGACTCAGTCGCTTTACAGCCACTTTCTTCAT
TGCTTTTCTGATGCTTGACTTAGGGTTTGGCATGAGATATTACCCTTCTC
AAGTCCAGGTTTTGAGTGGTTGGGTGCACCACATATTCTACTTGGGAGTG
CTGGCATGGGCACTGATCTCTCACTTCACCCTGGGCTTCTGCTTGTTTTT
GCCCTTGGAAATCCCGACCTTTATTCTCGCGGTGGGAAGTCTGTACCCGC
AACGGAGGAGCGACTGGTTGTTTGGATTAACCTTCTTTATCACACGGATA
TGCTACCACTTGTTGTTGTTCTTATTGGTCAGGGAGATTAAGGACCCCCG
GTTGCCGTTGTGGGTTGTGGTGGCGGTGACGTTTTGGTTGCACATGTACT
GGTTTGTGATGTGGGCCAAGGGCTGGGCGAGGAGGAGGAGGAAATCGGGG
AAGGCAGCAGCGGTGGGAGGCTCAGAGATGGAATTTGTGAGGGATGGGAG
GGGAGATATTAAATCATCGTAAATGTCCCCCAAGCGCCTAGCCTGGTTGT
TGAGTGCATTCAGTAGCTTCATTACTGCCTCGTTGAGCTTATCGGCGTTG
TATCAATTATTTGAGCAGGCATGGGTGATAGAGAATGTGCTGTTCGCAGA
CGATCGACTCAGTCGCTTTACAGCCACTTTCTTCATTGCTTTTCTGATGC
TTGACTTAGGGTTTGGCATGAG
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Synonyms
Publications