jgi.p|Nanoce1779_2|605104, mRNA_9604 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605104
Unique NamemRNA_9604
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1404
Alignment locationscaffold_31:45735..47393 -

Link to JBrowse

Properties
Property NameValue
TranscriptId605190
TrackFilteredModels2
ProteinId605104
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:45735..47393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605104gene_9604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605104mRNA_9604-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9604CDS_9604Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9604 ID=mRNA_9604|Name=jgi.p|Nanoce1779_2|605104|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ACAGGTAACATTAAAAACTAAGCGACGGACTGCAATAAATAGGAGGGAGT
GCAAGCATTGAGTCGAGGAAATGACGCCGCCGCAGCAGCATCAGCATCAC
TGGCCGTCGTCGTTGCAGTTGCTTCTTCTCCTTTCAAGTGCCCATGCTTT
TATCCCGGCTCATGCTCCCACTGCTCCTGTGACAGCTTTCTTCACATCTA
CTACGGTCATCTCCAGCCTTTCTTCCCGATCCCCCCTCTCTCTAACCTCC
ATCCCCTCTGCCCGCACGCCCCTCCCTTGCCTATGGCAAATTCGCTCCGA
CCAACAGCACACCGAAGACTACTTCCGCTTTATCGAAGGCAAAGAGGCCC
CGGAGAAGGTTGATCAGCCCAGTGTCATTATCGGCAAGGGCAAGTTGGGT
CAAGCACTAGCTGAGTGGAGCACCTTCGGAAAAGATGACGTGCTTGTGGA
CCGTGGGGAAACCATTCCACTCACACTTACGGCCGCCAACGGCACTGTTT
ACGAGAGCTTCCCGATCTATGTGTGTGTGCATGAGTGGCAAGTAGAGGAG
GTGATCTTAGCGTGTCCCAAGGAAAAGAGAAATGACCTGGTGTTCATGCA
GTCTGCATGCCTGGAAAATCTCCTGAAGAGGTATGGCCTATGCAACAAAA
AGACCACACAATGCGTCCCCTACTTCTCTGTGTCCCCTCTTGGCCTTCCC
ATAGATGGCCGAGTGCAGTACGACGTGAGCAAGACGGATGGCGAGCCGAA
GTACGCGGGGCAGACGTCTGTGTGTGGCCTATGGCGCGGGGCGGTCGCCG
AGCGACTCAAGAAGAAGGGGCTGCATGTGGTCACGATGGATTACATGTAC
TGGCGGAAGCAGATGTTGGAGCGCTTATTGTTCGATAGTGTGTTTGGCCT
CCTGGCGTGCGTGCATGCGGGCTCGGGGGAGAAGACGTACGGCGAGCTGG
CCCAAAACCACTGGGAGGAGATCGACGACATACTCTCAGAGCTAAATCGC
GCTGTAGCAAACATCATGGCGGTCGTTTTGCTCACACATGTGGACCGACG
CCTGCGGGGACTGGCGGAGGGGCCCAGTTGGCGGGACAAGAGGCCTCGAA
TGGCCACGGCGCAGGAGTACCCTTATCGAAACGGTGTGCTGCGGTCGTTG
AGTAGGACCTTTACGTCGCGCGGCTTTCCCTCCCCCATGGCCACCCACGA
CGAGTACCTGAACTTCGCCAAGGAGCGGAAGCTAGTGTTGTACGATGTGG
ACATGGAGCGCTAGGATGGGAAGGGAGGCAGTAGGGTGCTTTGTTTTATA
GGGGAGGAGAGGGGAGTGAATGGCGAGACGGAAATAGAAATCATTGGGCG
CAGAAAGCACAATCTTTGAATGTTTATGGCAACGCCTTAATTACAAATAG
TCAC
back to top

protein sequence of jgi.p|Nanoce1779_2|605104

>mRNA_9604-protein ID=mRNA_9604-protein|Name=jgi.p|Nanoce1779_2|605104|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MTPPQQHQHHWPSSLQLLLLLSSAHAFIPAHAPTAPVTAFFTSTTVISSL
SSRSPLSLTSIPSARTPLPCLWQIRSDQQHTEDYFRFIEGKEAPEKVDQP
SVIIGKGKLGQALAEWSTFGKDDVLVDRGETIPLTLTAANGTVYESFPIY
VCVHEWQVEEVILACPKEKRNDLVFMQSACLENLLKRYGLCNKKTTQCVP
YFSVSPLGLPIDGRVQYDVSKTDGEPKYAGQTSVCGLWRGAVAERLKKKG
LHVVTMDYMYWRKQMLERLLFDSVFGLLACVHAGSGEKTYGELAQNHWEE
IDDILSELNRAVANIMAVVLLTHVDRRLRGLAEGPSWRDKRPRMATAQEY
PYRNGVLRSLSRTFTSRGFPSPMATHDEYLNFAKERKLVLYDVDMER*
back to top

mRNA from alignment at scaffold_31:45735..47393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9604 ID=mRNA_9604|Name=jgi.p|Nanoce1779_2|605104|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at scaffold_31:45735..47393- (Nannochloropsis oceanica)
ACAGGTAACATTAAAAACTAAGCGACGGACTGCAATAAATAGGAGGGAGT
GCAAGCATTGAGTCGAGGAAATGACGCCGCCGCAGCAGCATCAGCATCAC
TGGCCGTCGTCGTTGCAGTTGCTTCTTCTCCTTTCAAGTGCCCATGCTTT
TATCCCGGCTCATGCTCCCACTGCTCCTGTGACAGCTTTCTTCACATCTA
CTACGGTCATCTCCAGCCTTTCTTCCCGATCCCCCCTCTCTCTAACCTCC
ATCCCCTCTGCCCGCACGCCCCTCCCTTGCCTATGGCAAATTCGCTCCGA
CCAACAGCACACCGAAGACTACTTCCGCTTTATCGAAGGCAAAGAGGTGT
GTTCATGTGCTAGAACCGAGCGTAGAGATAAAGAAGGAAGGAGCAAACCC
CTTCCACGTGCCTCTGCTGCCAATTTGCCAATTTGGTCGTCGCTTTTAAA
GAGAGCGAGCTATCCATTTAGTGCCCCTCCTGTCTAGACCTCTTTTGTTG
TTCATCGTCCGTTCTCTCCTCCAAGAGACATCTCAGACCACTGCCTTGCA
AAATGTTCACTTTCGTCTCTCATTCTCTTCCTTTTTTCTCTCCATCCTTA
GGCCCCGGAGAAGGTTGATCAGCCCAGTGTCATTATCGGCAAGGGCAAGT
TGGGTCAAGCACTAGCTGAGTGGAGCACCTTCGGAAAAGATGACGTGCTT
GTGGACCGTGGGGAAACCATTCCACTCACACTTACGGCCGCCAACGGCAC
TGTTTACGAGAGCTTCCCGATCTATGTGTGTGTGCATGAGTGGCAAGTAG
AGGAGGTGATCTTAGCGTGTCCCAAGGAAAAGAGAAATGACCTGGTGTTC
ATGCAGTCTGCATGCCTGGAAAATCTCCTGAAGAGGTATGGCCTATGCAA
CAAAAAGACCACACAATGCGTCCCCTACTTCTCTGTGTCCCCTCTTGGCC
TTCCCATAGATGGCCGAGTGCAGTACGACGTGAGCAAGACGGATGGCGAG
CCGAAGTACGCGGGGCAGACGTCTGTGTGTGGCCTATGGCGCGGGGCGGT
CGCCGAGCGACTCAAGAAGAAGGGGCTGCATGTGGTCACGATGGATTACA
TGTACTGGCGGAAGCAGATGTTGGAGCGCTTATTGTTCGATAGTGTGTTT
GGCCTCCTGGCGTGCGTGCATGCGGGCTCGGGGGAGAAGACGTACGGCGA
GCTGGCCCAAAACCACTGGGAGGAGATCGACGACATACTCTCAGAGCTAA
ATCGCGCTGTAGCAAACATCATGGCGGTCGTTTTGCTCACACATGTGGAC
CGACGCCTGCGGGGACTGGCGGAGGGGCCCAGTTGGCGGGACAAGAGGCC
TCGAATGGCCACGGCGCAGGAGTACCCTTATCGAAACGGTGTGCTGCGGT
CGTTGAGTAGGACCTTTACGTCGCGCGGCTTTCCCTCCCCCATGGCCACC
CACGACGAGTACCTGAACTTCGCCAAGGAGCGGAAGCTAGTGTTGTACGA
TGTGGACATGGAGCGCTAGGATGGGAAGGGAGGCAGTAGGGTGCTTTGTT
TTATAGGGGAGGAGAGGGGAGTGAATGGCGAGACGGAAATAGAAATCATT
GGGCGCAGAAAGCACAATCTTTGAATGTTTATGGCAACGCCTTAATTACA
AATAGTCAC
back to top

Coding sequence (CDS) from alignment at scaffold_31:45735..47393-

>mRNA_9604 ID=mRNA_9604|Name=jgi.p|Nanoce1779_2|605104|organism=Nannochloropsis oceanica|type=CDS|length=2388bp|location=Sequence derived from alignment at scaffold_31:45735..47393- (Nannochloropsis oceanica)
GCCCCGGAGAAGGTTGATCAGCCCAGTGTCATTATCGGCAAGGGCAAGTT
GGGTCAAGCACTAGCTGAGTGGAGCACCTTCGGAAAAGATGACGTGCTTG
TGGACCGTGGGGAAACCATTCCACTCACACTTACGGCCGCCAACGGCACT
GTTTACGAGAGCTTCCCGATCTATGTGTGTGTGCATGAGTGGCAAGTAGA
GGAGGTGATCTTAGCGTGTCCCAAGGAAAAGAGAAATGACCTGGTGTTCA
TGCAGTCTGCATGCCTGGAAAATCTCCTGAAGAGGTATGGCCTATGCAAC
AAAAAGACCACACAATGCGTCCCCTACTTCTCTGTGTCCCCTCTTGGCCT
TCCCATAGATGGCCGAGTGCAGTACGACGTGAGCAAGACGGATGGCGAGC
CGAAGTACGCGGGGCAGACGTCTGTGTGTGGCCTATGGCGCGGGGCGGTC
GCCGAGCGACTCAAGAAGAAGGGGCTGCATGTGGTCACGATGGATTACAT
GTACTGGCGGAAGCAGATGTTGGAGCGCTTATTGTTCGATAGTGTGTTTG
GCCTCCTGGCGTGCGTGCATGCGGGCTCGGGGGAGAAGACGTACGGCGAG
CTGGCCCAAAACCACTGGGAGGAGATCGACGACATACTCTCAGAGCTAAA
TCGCGCTGTAGCAAACATCATGGCGGTCGTTTTGCTCACACATGTGGACC
GACGCCTGCGGGGACTGGCGGAGGGGCCCAGTTGGCGGGACAAGAGGCCT
CGAATGGCCACGGCGCAGGAGTACCCTTATCGAAACGGTGTGCTGCGGTC
GTTGAGTAGGACCTTTACGTCGCGCGGCTTTCCCTCCCCCATGGCCACCC
ACGACGAGTACCTGAACTTCGCCAAGGAGCGGAAGCTAGTGTTGTACGAT
GTGGACATGGAGCGCTAGATGACGCCGCCGCAGCAGCATCAGCATCACTG
GCCGTCGTCGTTGCAGTTGCTTCTTCTCCTTTCAAGTGCCCATGCTTTTA
TCCCGGCTCATGCTCCCACTGCTCCTGTGACAGCTTTCTTCACATCTACT
ACGGTCATCTCCAGCCTTTCTTCCCGATCCCCCCTCTCTCTAACCTCCAT
CCCCTCTGCCCGCACGCCCCTCCCTTGCCTATGGCAAATTCGCTCCGACC
AACAGCACACCGAAGACTACTTCCGCTTTATCGAAGGCAAAGAGGCCCCG
GAGAAGGTTGATCAGCCCAGTGTCATTATCGGCAAGGGCAAGTTGGGTCA
AGCACTAGCTGAGTGGAGCACCTTCGGAAAAGATGACGTGCTTGTGGACC
GTGGGGAAACCATTCCACTCACACTTACGGCCGCCAACGGCACTGTTTAC
GAGAGCTTCCCGATCTATGTGTGTGTGCATGAGTGGCAAGTAGAGGAGGT
GATCTTAGCGTGTCCCAAGGAAAAGAGAAATGACCTGGTGTTCATGCAGT
CTGCATGCCTGGAAAATCTCCTGAAGAGGTATGGCCTATGCAACAAAAAG
ACCACACAATGCGTCCCCTACTTCTCTGTGTCCCCTCTTGGCCTTCCCAT
AGATGGCCGAGTGCAGTACGACGTGAGCAAGACGGATGGCGAGCCGAAGT
ACGCGGGGCAGACGTCTGTGTGTGGCCTATGGCGCGGGGCGGTCGCCGAG
CGACTCAAGAAGAAGGGGCTGCATGTGGTCACGATGGATTACATGTACTG
GCGGAAGCAGATGTTGGAGCGCTTATTGTTCGATAGTGTGTTTGGCCTCC
TGGCGTGCGTGCATGCGGGCTCGGGGGAGAAGACGTACGGCGAGCTGGCC
CAAAACCACTGGGAGGAGATCGACGACATACTCTCAGAGCTAAATCGCGC
TGTAGCAAACATCATGGCGGTCGTTTTGCTCACACATGTGGACCGACGCC
TGCGGGGACTGGCGGAGGGGCCCAGTTGGCGGGACAAGAGGCCTCGAATG
GCCACGGCGCAGGAGTACCCTTATCGAAACGGTGTGCTGCGGTCGTTGAG
TAGGACCTTTACGTCGCGCGGCTTTCCCTCCCCCATGGCCACCCACGACG
AGTACCTGAACTTCGCCAAGGAGCGGAAGCTAGTGTTGTACGATGTGGAC
ATGGAGCGCTAGATGACGCCGCCGCAGCAGCATCAGCATCACTGGCCGTC
GTCGTTGCAGTTGCTTCTTCTCCTTTCAAGTGCCCATGCTTTTATCCCGG
CTCATGCTCCCACTGCTCCTGTGACAGCTTTCTTCACATCTACTACGGTC
ATCTCCAGCCTTTCTTCCCGATCCCCCCTCTCTCTAACCTCCATCCCCTC
TGCCCGCACGCCCCTCCCTTGCCTATGGCAAATTCGCTCCGACCAACAGC
ACACCGAAGACTACTTCCGCTTTATCGAAGGCAAAGAG
back to top
Synonyms
Publications