jgi.p|Nanoce1779_2|642310, mRNA_9634 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642310
Unique NamemRNA_9634
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length372
Alignment locationscaffold_31:146424..148127 -

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Properties
Property NameValue
TranscriptId642396
TrackFilteredModels2
ProteinId642310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:146424..148127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642310gene_9634Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642310mRNA_9634-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9634CDS_9634Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9634 ID=mRNA_9634|Name=jgi.p|Nanoce1779_2|642310|organism=Nannochloropsis oceanica|type=mRNA|length=372bp
ATGCAGAGATGGAGGGATGCGGAGGAGAACGAGGGGGAGGAGGAGGAGGG
GGAGGAGGTGGAGGGGGATGGAGCTCAGCCGACGTTGGCCCTCACCTCAA
TCAAGGTCGTCGACAGGGACAGGGCTAACAAGGACCAATGGAATGTCAAA
GGCTACCTCAAAGACCCTGGCGGTAAATTGGACGAGTTTGGCAGGACTGC
TGTGCTGTATAACTCGAGGGGTGTCGTCGTGAATGAGGAGGCTTTTGATC
CCGCTGATTTAAAATCGACCAACAATGTTAAAGAATTGTTTGCAAGACTA
TGGGCGCCCCATTATTTCAACACGGCCTGCTCCCGCTCCAAAGCCAAACC
GAGATTGTTACGCATCCCCTGA
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protein sequence of jgi.p|Nanoce1779_2|642310

>mRNA_9634-protein ID=mRNA_9634-protein|Name=jgi.p|Nanoce1779_2|642310|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MQRWRDAEENEGEEEEGEEVEGDGAQPTLALTSIKVVDRDRANKDQWNVK
GYLKDPGGKLDEFGRTAVLYNSRGVVVNEEAFDPADLKSTNNVKELFARL
WAPHYFNTACSRSKAKPRLLRIP*
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mRNA from alignment at scaffold_31:146424..148127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9634 ID=mRNA_9634|Name=jgi.p|Nanoce1779_2|642310|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at scaffold_31:146424..148127- (Nannochloropsis oceanica)
ATGCAGAGATGGAGGGATGCGGAGGAGAACGAGGGGGAGGAGGAGGAGGG
GGAGGAGGTGGAGGGGGATGGAGGTAGAGGGGGAGAGAAGGAGTTCTCCT
GCGAATCTCTTTGTACGGGAAGGAGTGCGTGTTCAAAGTACAAGGTTTTT
AGTTTGGAAAGCGCGGAAGAGAACTATTACCCCCCCCATCGACTTCATCC
ACCTCCCTCCCCCTTCCCCTCCTCCAGATCCCTTCTCCTCCTTCGCCTCT
CCCTCCTCCCCCCTTCCTCTTCTACCTCCCCTACTCTGCCTCCCTCCCCC
TTCACCTCCTCCACCTTTTTTGCCTCCCTCTCCTACACCTCCTTCACCTC
CCCGCCTCTCTCATCAGTACCAGCTTGGCGTCATCGTCCCACAGAAATGG
CAGTGACCTGATGCCGGTATGTGCACCGTGACCCTGGGGGGGGGGGCTAT
TTTGGTACTCACAAGATGTTAATATATTTATTAAGGTAGTTGCAATGTCT
TCTACTTGTCAACATAACGTGTGGGGGCACCATTTATGTGGCTTTATGAA
AAGAGAGGCCCGGACATGTTCAGTACCCTCCATTGCTCCTCCTCCTCTTC
TCTTCCCCATCCTTCTCTCTGCCCTTCTCTTTTCCCTTATCTCCGTTGTT
CTACTTTTAATTTTGTTTTTCATTCCTCTTCTATCTTCCACCTTCCTCGC
CCGGCGGGGCGGTATTACTCCGCTAATTTATGGTATTTCTTTGTGGGAGT
CCTGAAGAGTTGCGATCATATGAGCTAGACAACGATATTTCGACCAAACA
TAATGCAACTATTAAACAATGGAGCTCCCTTCCCCAGTCTCATCTTTTCA
TTTCTCATCTTCATCACCTCCACCTCCCTCCCGTGCAAGTCAGGAATGCA
TGCACAACGCATATTATCGCCCCCACGCACACCACATCTATCCGCTCGCA
AGACATCTCACACACGGAATGATATAAGCCTTTGAATCTGCCGCATAAAG
CTTCCTGATCCCCGGTTGTGCTTACTCACAAGACGTTGAAGATTTTCTTT
AACCGACAGACATCCCAAGAATCAGTCAAAGCACCCACCTACACCTCATG
CCATGAGAGTAAAGAAGCCTCCCTTACGGGAATCTATTCGTCGCACTTTT
CCTCTTCTCGCAATCGTTATCACCTTCGCCCTCACGGCAGCTCAGCCGAC
GTTGGCCCTCACCTCAATCAAGGTCGTCGACAGGGACAGGGCTAACAAGG
ACCAATGGAATGTCAAAGGCTACCTCAAAGACCCTGGCGGTAAATTGGAC
GAGTTTGGCAGGACTGCTGTGCTGTATAACTCGAGGGGTGTCGTCGTGAA
TGAGGAGGCTTTTGATCCCGCTGATTTAAAATCGACCAACAATGTTAAAG
AATTGTTTGCAAGACTATGGGCGCCCGTATGTCGCTCAAGAAAGCTAAGA
GGGTACCCAACATGACTTCACCGCGACAGACGCGCACCAATACACACTAC
GCATCTGTCTCAGCTGCTTCCAAGCGTCAGGCATTTAATACCTGGTATCG
ACGCGGTTGGCAGCCATCTTCGCCATTAATGGCTTAAGCGAACTTTCTGC
AACCTTGGTTGCTGACGTTCAGCACCCAATCGTCCACAGAGCATTATTTC
AACACGGCCTGCTCCCGCTCCAAAGCCAAACCGAGATTGTTACGCATCCC
CTGA
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Coding sequence (CDS) from alignment at scaffold_31:146424..148127-

>mRNA_9634 ID=mRNA_9634|Name=jgi.p|Nanoce1779_2|642310|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_31:146424..148127- (Nannochloropsis oceanica)
CATTATTTCAACACGGCCTGCTCCCGCTCCAAAGCCAAACCGAGATTGTT
ACGCATCCCCTGACTCAGCCGACGTTGGCCCTCACCTCAATCAAGGTCGT
CGACAGGGACAGGGCTAACAAGGACCAATGGAATGTCAAAGGCTACCTCA
AAGACCCTGGCGGTAAATTGGACGAGTTTGGCAGGACTGCTGTGCTGTAT
AACTCGAGGGGTGTCGTCGTGAATGAGGAGGCTTTTGATCCCGCTGATTT
AAAATCGACCAACAATGTTAAAGAATTGTTTGCAAGACTATGGGCGCCCA
TGCAGAGATGGAGGGATGCGGAGGAGAACGAGGGGGAGGAGGAGGAGGGG
GAGGAGGTGGAGGGGGATGGAGCATTATTTCAACACGGCCTGCTCCCGCT
CCAAAGCCAAACCGAGATTGTTACGCATCCCCTGACTCAGCCGACGTTGG
CCCTCACCTCAATCAAGGTCGTCGACAGGGACAGGGCTAACAAGGACCAA
TGGAATGTCAAAGGCTACCTCAAAGACCCTGGCGGTAAATTGGACGAGTT
TGGCAGGACTGCTGTGCTGTATAACTCGAGGGGTGTCGTCGTGAATGAGG
AGGCTTTTGATCCCGCTGATTTAAAATCGACCAACAATGTTAAAGAATTG
TTTGCAAGACTATGGGCGCCCATGCAGAGATGGAGGGATGCGGAGGAGAA
CGAGGGGGAGGAGGAGGAGGGGGAGGAGGTGGAGGGGGATGGAGCATTAT
TTCAACACGGCCTGCTCCCGCTCCAAAGCCAAACCGAGATTGTTACGCAT
CCCCTGACTCAGCCGACGTTGGCCCTCACCTCAATCAAGGTCGTCGACAG
GGACAGGGCTAACAAGGACCAATGGAATGTCAAAGGCTACCTCAAAGACC
CTGGCGGTAAATTGGACGAGTTTGGCAGGACTGCTGTGCTGTATAACTCG
AGGGGTGTCGTCGTGAATGAGGAGGCTTTTGATCCCGCTGATTTAAAATC
GACCAACAATGTTAAAGAATTGTTTGCAAGACTATGGGCGCCCATGCAGA
GATGGAGGGATGCGGAGGAGAACGAGGGGGAGGAGGAGGAGGGGGAGGAG
GTGGAGGGGGATGGAG
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Synonyms
Publications