jgi.p|Nanoce1779_2|658794, mRNA_9281 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658794
Unique NamemRNA_9281
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_33:175258..176853 -

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Properties
Property NameValue
TranscriptId658880
TrackFilteredModels2
ProteinId658794
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:175258..176853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658794gene_9281Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658794mRNA_9281-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9281CDS_9281Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9281 ID=mRNA_9281|Name=jgi.p|Nanoce1779_2|658794|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
AAACAACAAGGACAACACGGAAGAGAACAAGAAATCTGAGTACAGGACCA
TCCTGCGTATCGGGTCCTCCTCCAACAAGACGAAATAAATCGACAACACC
TTCACCGACTCCCCCAAGACCTCCCTACTAACGTGCACGGGCCAGGCCAG
TACAATTACGATCATGACAACGCCAAGGCCTCACACGAGCGTCAACCCGC
TTCGAAGAGTACATGCAGATGCCAAGGTAGCGGTCAAAAGCTACACAGGT
CCGCGCACAACCCCACGTCGTTCCTCCCCATCCTTCCCTCGATATGTTCC
TCTTCTCCTCACCATGCCGCTACTCCCCCGCAATGCTGACAGATAGCTTT
CCGGATCTGGCCCCACCCATTTCTGCCACTGAAGTCCGATCCCTTCCTTC
CGACGCCGTGGTTTTAGTCGATGTCCGCACGCCCGAAGAGCGAGCTGTGT
CAATGCTGCCAGCAGCCATAACCCAAGAAGAGTTTGAGAGGCGACAAGAA
GAATACAGGGCAAGGCCTGAAATCACGGTAGTCCCGTACTGCACCATGGG
GCGGCGCTCCGGGATATACGCGAGAAAGCTGGTGAAAAAGGGAGGCTTCG
AGAAGGAGAAGGTGCGAAACGGGGAAGGCATCCTCCTCTGGACGCATGAG
GGGGGGAGGGAGGGAAGGAAGGAGGGAGGGAGGGACGCGATGGAGACTGC
GCTGCTGGTAGGCCCGGACGGGCGAAGCACCCGCCGTGTGCATGCCTACG
GGCAGGCCTGGGCGGCGTATGCGGCTGAGGGCTTCGAGGTGGTCCTTTTC
CCCAGTTCGCGCAAAAACCCGCTCCGGTGGCTGCAAGGCGCCTGGGAGCA
CTTGGCAGATAAGAGGAGAAGGCAGAGGGAGACGTTGATGAAGGAGGAGG
ATAAAGGGGAAGACGGATGA
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protein sequence of jgi.p|Nanoce1779_2|658794

>mRNA_9281-protein ID=mRNA_9281-protein|Name=jgi.p|Nanoce1779_2|658794|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MFLFSSPCRYSPAMLTDSFPDLAPPISATEVRSLPSDAVVLVDVRTPEER
AVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKG
GFEKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVH
AYGQAWAAYAAEGFEVVLFPSSRKNPLRWLQGAWEHLADKRRRQRETLMK
EEDKGEDG*
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mRNA from alignment at scaffold_33:175258..176853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9281 ID=mRNA_9281|Name=jgi.p|Nanoce1779_2|658794|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at scaffold_33:175258..176853- (Nannochloropsis oceanica)
AAACAACAAGGACAACACGGAAGAGAACAAGAAATCTGAGTACAGGACCA
TCCTGCGTATCGGGTCCTCCTCCAACAAGACGAAATAAATCGACAACACC
TTCACCGACTCCCCCAAGACCTCCCTACTAACGTGCACGGGCCAGGCCAG
TACAATTACGATCATGACAACGCCAAGGCCTCACACGAGCGTCAACCCGC
TTCGAAGAGTACATGCAGATGCCAAGGTAGCGGTCAAAAGCTACACAGGT
CCGCGCACAACCCCACGTCGTTCCTCCCCATCCTTCCCTCGATATGTTCC
TCTTCTCCTCACCATGCCGCTACTCCCCCGCAATGCTGACAGATAGCTTT
CCGGATCTGGCCCCACCCATTTCTGCCACTGAAGTCCGATCCCTTCCTTC
CGACGCCGTGGTTTTAGGTGAGAAACCAATGGGTCAATCATCGTGGTGAA
TTCCACTTGCACTACCTCTCCTTTCTCACCCTCTTTCTGCAACCAAATAG
TCGATGTCCGCACGCCCGAAGAGCGAGCTGTGTCAATGCTGCCAGCAGCC
ATAACCCAAGAAGAGTTTGAGAGGCGACAAGAAGAATACAGGTAAAACAA
TCGAGGGTAAAAGGATAAAGGAAGAAGGGACAGACAGCGTGAAGGTATCC
GTTACATCCGTTGCGGTCGTTTAGGAGACTTTCGCGTGCACCATTGACCA
CAAACTAGGGTCTTATGGACGTCTTGATCGGTTCTCGAATCTTACGCCAT
TCGTGTACCCTGTACATGTAATGCGCACAGGGCAAGGCCTGAAATCACGG
TAGTCCCGTACTGCACCATGGGGCGGCGCTCCGGGATATACGCGAGAAAG
CTGGTGAAAAAGGGAGGCTTCGAGAAGGAGAAGGTGAGGAAAGAATCAGG
AGGGAAAGAGGCGAAGAGAGGATTGTGACAAGAGGAGACGAGGAGGAAGT
CGGTGATTGCCTCTCGTGCGACACGCCTAGCACCCGGGCAAGGTAGGGAA
GAGATAGAACCTCCATCCGTCTCCCCACACCCGTGGCTGACGGTCCGCCC
GTTACATTGTACATTCCTCAATATTGTCCCACTGCCCACAATCATCATAA
ACACAAGGTGCGAAACGGGGAAGGCATCCTCCTCTGGACGCATGAGGGGG
GGAGGGAGGGAAGGAAGGAGGGAGGGAGGGACGCGATGGAGACTGCGCTG
CTGGTAGGCCCGGACGGGCGAAGCACCCGCCGTGTGCATGCCTACGGGCA
GGTAGGTAACGCGAAGAAGAGGAGGAGGGATAAAGAAGAGGCGAAGTGAA
CTCAGTCATGGCTCTAATGCCCCTCCTTCCCTTCCTCCCTCCCTCCTTGC
TCACCTTCCCCTTCTCAGGCTGACTGATGTTCCTCCTCCTTACCCTTCCC
TCCCTCCCTCTTTTCCTCTTGTCCTTCTCAGGCCTGGGCGGCGTATGCGG
CTGAGGGCTTCGAGGTGGTCCTTTTCCCCAGTTCGCGCAAAAACCCGCTC
CGGTGGCTGCAAGGCGCCTGGGAGCACTTGGCAGATAAGAGGAGAAGGCA
GAGGGAGACGTTGATGAAGGAGGAGGATAAAGGGGAAGACGGATGA
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Coding sequence (CDS) from alignment at scaffold_33:175258..176853-

>mRNA_9281 ID=mRNA_9281|Name=jgi.p|Nanoce1779_2|658794|organism=Nannochloropsis oceanica|type=CDS|length=3135bp|location=Sequence derived from alignment at scaffold_33:175258..176853- (Nannochloropsis oceanica)
GCCTGGGCGGCGTATGCGGCTGAGGGCTTCGAGGTGGTCCTTTTCCCCAG
TTCGCGCAAAAACCCGCTCCGGTGGCTGCAAGGCGCCTGGGAGCACTTGG
CAGATAAGAGGAGAAGGCAGAGGGAGACGTTGATGAAGGAGGAGGATAAA
GGGGAAGACGGATGAGTGCGAAACGGGGAAGGCATCCTCCTCTGGACGCA
TGAGGGGGGGAGGGAGGGAAGGAAGGAGGGAGGGAGGGACGCGATGGAGA
CTGCGCTGCTGGTAGGCCCGGACGGGCGAAGCACCCGCCGTGTGCATGCC
TACGGGCAGGGCAAGGCCTGAAATCACGGTAGTCCCGTACTGCACCATGG
GGCGGCGCTCCGGGATATACGCGAGAAAGCTGGTGAAAAAGGGAGGCTTC
GAGAAGGAGAAGTCGATGTCCGCACGCCCGAAGAGCGAGCTGTGTCAATG
CTGCCAGCAGCCATAACCCAAGAAGAGTTTGAGAGGCGACAAGAAGAATA
CAGATGTTCCTCTTCTCCTCACCATGCCGCTACTCCCCCGCAATGCTGAC
AGATAGCTTTCCGGATCTGGCCCCACCCATTTCTGCCACTGAAGTCCGAT
CCCTTCCTTCCGACGCCGTGGTTTTAGGCCTGGGCGGCGTATGCGGCTGA
GGGCTTCGAGGTGGTCCTTTTCCCCAGTTCGCGCAAAAACCCGCTCCGGT
GGCTGCAAGGCGCCTGGGAGCACTTGGCAGATAAGAGGAGAAGGCAGAGG
GAGACGTTGATGAAGGAGGAGGATAAAGGGGAAGACGGATGAGTGCGAAA
CGGGGAAGGCATCCTCCTCTGGACGCATGAGGGGGGGAGGGAGGGAAGGA
AGGAGGGAGGGAGGGACGCGATGGAGACTGCGCTGCTGGTAGGCCCGGAC
GGGCGAAGCACCCGCCGTGTGCATGCCTACGGGCAGGGCAAGGCCTGAAA
TCACGGTAGTCCCGTACTGCACCATGGGGCGGCGCTCCGGGATATACGCG
AGAAAGCTGGTGAAAAAGGGAGGCTTCGAGAAGGAGAAGTCGATGTCCGC
ACGCCCGAAGAGCGAGCTGTGTCAATGCTGCCAGCAGCCATAACCCAAGA
AGAGTTTGAGAGGCGACAAGAAGAATACAGATGTTCCTCTTCTCCTCACC
ATGCCGCTACTCCCCCGCAATGCTGACAGATAGCTTTCCGGATCTGGCCC
CACCCATTTCTGCCACTGAAGTCCGATCCCTTCCTTCCGACGCCGTGGTT
TTAGGCCTGGGCGGCGTATGCGGCTGAGGGCTTCGAGGTGGTCCTTTTCC
CCAGTTCGCGCAAAAACCCGCTCCGGTGGCTGCAAGGCGCCTGGGAGCAC
TTGGCAGATAAGAGGAGAAGGCAGAGGGAGACGTTGATGAAGGAGGAGGA
TAAAGGGGAAGACGGATGAGTGCGAAACGGGGAAGGCATCCTCCTCTGGA
CGCATGAGGGGGGGAGGGAGGGAAGGAAGGAGGGAGGGAGGGACGCGATG
GAGACTGCGCTGCTGGTAGGCCCGGACGGGCGAAGCACCCGCCGTGTGCA
TGCCTACGGGCAGGGCAAGGCCTGAAATCACGGTAGTCCCGTACTGCACC
ATGGGGCGGCGCTCCGGGATATACGCGAGAAAGCTGGTGAAAAAGGGAGG
CTTCGAGAAGGAGAAGTCGATGTCCGCACGCCCGAAGAGCGAGCTGTGTC
AATGCTGCCAGCAGCCATAACCCAAGAAGAGTTTGAGAGGCGACAAGAAG
AATACAGATGTTCCTCTTCTCCTCACCATGCCGCTACTCCCCCGCAATGC
TGACAGATAGCTTTCCGGATCTGGCCCCACCCATTTCTGCCACTGAAGTC
CGATCCCTTCCTTCCGACGCCGTGGTTTTAGGCCTGGGCGGCGTATGCGG
CTGAGGGCTTCGAGGTGGTCCTTTTCCCCAGTTCGCGCAAAAACCCGCTC
CGGTGGCTGCAAGGCGCCTGGGAGCACTTGGCAGATAAGAGGAGAAGGCA
GAGGGAGACGTTGATGAAGGAGGAGGATAAAGGGGAAGACGGATGAGTGC
GAAACGGGGAAGGCATCCTCCTCTGGACGCATGAGGGGGGGAGGGAGGGA
AGGAAGGAGGGAGGGAGGGACGCGATGGAGACTGCGCTGCTGGTAGGCCC
GGACGGGCGAAGCACCCGCCGTGTGCATGCCTACGGGCAGGGCAAGGCCT
GAAATCACGGTAGTCCCGTACTGCACCATGGGGCGGCGCTCCGGGATATA
CGCGAGAAAGCTGGTGAAAAAGGGAGGCTTCGAGAAGGAGAAGTCGATGT
CCGCACGCCCGAAGAGCGAGCTGTGTCAATGCTGCCAGCAGCCATAACCC
AAGAAGAGTTTGAGAGGCGACAAGAAGAATACAGATGTTCCTCTTCTCCT
CACCATGCCGCTACTCCCCCGCAATGCTGACAGATAGCTTTCCGGATCTG
GCCCCACCCATTTCTGCCACTGAAGTCCGATCCCTTCCTTCCGACGCCGT
GGTTTTAGGCCTGGGCGGCGTATGCGGCTGAGGGCTTCGAGGTGGTCCTT
TTCCCCAGTTCGCGCAAAAACCCGCTCCGGTGGCTGCAAGGCGCCTGGGA
GCACTTGGCAGATAAGAGGAGAAGGCAGAGGGAGACGTTGATGAAGGAGG
AGGATAAAGGGGAAGACGGATGAGTGCGAAACGGGGAAGGCATCCTCCTC
TGGACGCATGAGGGGGGGAGGGAGGGAAGGAAGGAGGGAGGGAGGGACGC
GATGGAGACTGCGCTGCTGGTAGGCCCGGACGGGCGAAGCACCCGCCGTG
TGCATGCCTACGGGCAGGGCAAGGCCTGAAATCACGGTAGTCCCGTACTG
CACCATGGGGCGGCGCTCCGGGATATACGCGAGAAAGCTGGTGAAAAAGG
GAGGCTTCGAGAAGGAGAAGTCGATGTCCGCACGCCCGAAGAGCGAGCTG
TGTCAATGCTGCCAGCAGCCATAACCCAAGAAGAGTTTGAGAGGCGACAA
GAAGAATACAGATGTTCCTCTTCTCCTCACCATGCCGCTACTCCCCCGCA
ATGCTGACAGATAGCTTTCCGGATCTGGCCCCACCCATTTCTGCCACTGA
AGTCCGATCCCTTCCTTCCGACGCCGTGGTTTTAG
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Synonyms
Publications