jgi.p|Nanoce1779_2|606918, mRNA_9724 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606918
Unique NamemRNA_9724
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length549
Alignment locationscaffold_37:13578..14126 +

Link to JBrowse

Properties
Property NameValue
TranscriptId607004
TrackFilteredModels2
ProteinId606918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:13578..14126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606918gene_9724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606918mRNA_9724-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9724CDS_9724Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9724 ID=mRNA_9724|Name=jgi.p|Nanoce1779_2|606918|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
ACAGGATAACGACAGTGCATTGATTTTTGATTTTGATTTGATGTTTTTCA
CTTGCTATTCAACAATGACTTTGGGCTTGAGCGTTTTGCTCGGTCTGAGC
GTCCCCACCACGACGCTCGCAGCTCACCTGCGCCGCAACGACTGGAACGC
TTCTTCAGTCCTCAACCTGGCCAACGACAACACCATCGAGGACGCCGGTC
TTCATACAAGCATCAACAATGCCATCCATGATAAGGGACCCCTTGCCAGT
CAGGACAAGACTGGTACGCTGGAGTGGGCAGGGCAGGCACAGGCTACCCC
CAATGACACTGTCGTCTCTGTGTCGAACCCGATGGGAGACCAGGGCGGGG
GGCTTACGGATCAGATCCCTGGCATGATGCCATTTGGTACTGGCATTGTG
AGTGTCCCGGTTGACAAGGGCGAGGCACCTACTGCTGACGAAATGCCGTA
ATTTGCTTAAGAGAGAGAAGGGAGAGAGATCGATCGTGTGGAGGAAGATG
AGGGATGTGCTTGTGTTCATGGTGATCGTGCGCGAAGCTTGCTTTTTCT
back to top

protein sequence of jgi.p|Nanoce1779_2|606918

>mRNA_9724-protein ID=mRNA_9724-protein|Name=jgi.p|Nanoce1779_2|606918|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFFTCYSTMTLGLSVLLGLSVPTTTLAAHLRRNDWNASSVLNLANDNTIE
DAGLHTSINNAIHDKGPLASQDKTGTLEWAGQAQATPNDTVVSVSNPMGD
QGGGLTDQIPGMMPFGTGIVSVPVDKGEAPTADEMP*
back to top

mRNA from alignment at scaffold_37:13578..14126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9724 ID=mRNA_9724|Name=jgi.p|Nanoce1779_2|606918|organism=Nannochloropsis oceanica|type=mRNA|length=549bp|location=Sequence derived from alignment at scaffold_37:13578..14126+ (Nannochloropsis oceanica)
ACAGGATAACGACAGTGCATTGATTTTTGATTTTGATTTGATGTTTTTCA
CTTGCTATTCAACAATGACTTTGGGCTTGAGCGTTTTGCTCGGTCTGAGC
GTCCCCACCACGACGCTCGCAGCTCACCTGCGCCGCAACGACTGGAACGC
TTCTTCAGTCCTCAACCTGGCCAACGACAACACCATCGAGGACGCCGGTC
TTCATACAAGCATCAACAATGCCATCCATGATAAGGGACCCCTTGCCAGT
CAGGACAAGACTGGTACGCTGGAGTGGGCAGGGCAGGCACAGGCTACCCC
CAATGACACTGTCGTCTCTGTGTCGAACCCGATGGGAGACCAGGGCGGGG
GGCTTACGGATCAGATCCCTGGCATGATGCCATTTGGTACTGGCATTGTG
AGTGTCCCGGTTGACAAGGGCGAGGCACCTACTGCTGACGAAATGCCGTA
ATTTGCTTAAGAGAGAGAAGGGAGAGAGATCGATCGTGTGGAGGAAGATG
AGGGATGTGCTTGTGTTCATGGTGATCGTGCGCGAAGCTTGCTTTTTCT
back to top

Coding sequence (CDS) from alignment at scaffold_37:13578..14126+

>mRNA_9724 ID=mRNA_9724|Name=jgi.p|Nanoce1779_2|606918|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_37:13578..14126+ (Nannochloropsis oceanica)
ATGTTTTTCACTTGCTATTCAACAATGACTTTGGGCTTGAGCGTTTTGCT
CGGTCTGAGCGTCCCCACCACGACGCTCGCAGCTCACCTGCGCCGCAACG
ACTGGAACGCTTCTTCAGTCCTCAACCTGGCCAACGACAACACCATCGAG
GACGCCGGTCTTCATACAAGCATCAACAATGCCATCCATGATAAGGGACC
CCTTGCCAGTCAGGACAAGACTGGTACGCTGGAGTGGGCAGGGCAGGCAC
AGGCTACCCCCAATGACACTGTCGTCTCTGTGTCGAACCCGATGGGAGAC
CAGGGCGGGGGGCTTACGGATCAGATCCCTGGCATGATGCCATTTGGTAC
TGGCATTGTGAGTGTCCCGGTTGACAAGGGCGAGGCACCTACTGCTGACG
AAATGCCGTAA
back to top
Synonyms
Publications