jgi.p|Nanoce1779_2|291647, mRNA_2025 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|291647
Unique Name	mRNA_2025
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2278
Alignment location	scaffold_4:588378..591119 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	291733
Track	FilteredModels2
ProteinId	291647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:588378..591119 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|291647	gene_2025	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|291647	mRNA_2025-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2025	CDS_2025	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:588378..591119+
coding sequence from alignment at scaffold_4:588378..591119+

mRNA sequence

>mRNA_2025 ID=mRNA_2025|Name=jgi.p|Nanoce1779_2|291647|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp
CCTTCGGGAGGCCCATGTTGTCATGTTCTTCCTTTTCGCGGGCTCCCTGT
TGGCAGTAAGACACAGGAGGGTCCCTGTTGCCAAGGGCGGCATCTGGATC
CGCTCGTCCCGTGTCAGCAGTCCCCACCGCAGCAACAACGCCTCCTCGCT
TTTCGTGTGCCAGCGCAGCGAAAGAGGCGCAACAGACACGAACAGAAATG
ATGGTCAAGCCCTGCAGGAGAAGACTAGCGGCGGCGGCCCCGCGCCTGGT
CTGCGTCATGCTTATCCTTCATCTACATGTCCTCCTCGGTGAGGCTTTTC
AGGGACCTGTAAGCAAGCGGCAGCATTTCCGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACCCCATCTTCTTTCGTGCGGGGTCGTGCA
GAAGACGGATCAATTCATGACCATCGCAGCCGCCGGCTCAAGCACCAGCA
CTACCGAAGCGCATACAGCAGGGAGCACTTCCACCATGGCTCCGCCTGTG
GCACCCACCACTACCACCAAGTCTTCTTCCCCCCAACACTCGTCCACATC
ATCGTCCGCCTCCTCCTCCCCCTCCTCTTCCTCCTCCTCCTCCTCCAGGC
CCCTCCAAGGAACCTTGTTGGAGACCAGGCCATACCTACCATCTCAATTT
TTAACACCGCCTTTGTCCACCGCCGAATCCTCCCGTTTGGCCGTCACGGC
TGCAATACACAAGCACCAGAAGAAGAAGGCAGTACCCCGCCATATCAATG
CTTCACCCATTCAAGAAGAGGTGACAGAACGGAAAGAGGAGGGAGGTAAA
GCAAGGGAATTCGTGACTATTGGTGTCATCAGTCATCACGAGGCTCTGGA
GCTGCTATGTCTGCGGGAGGGCCTAGGGGGGAGGGGGGGAAGGAAGGGGC
TCTACTACCACGAAGGCGTCTCCCTCGACTTGGGCCGAACCGAAACCATG
GTGGTGGTGGTCGAAGAAGGCATTGCTGTACCAATCTATCAAAAAGAGAA
TCATCTGTATTATCACCACCACAACCCTCGAGGAGGGGGAGGACGACAAC
CGGCGCTGGTTGCCAGCTGGGAGGAACTCGAAGACATAGTCGCCCAAGCG
CACCGAGGCGAGCCGGGATGCTTTGCCCTTTACGCGGACGGCACTCAGCC
GTGGAGAATAAGCGCGATAAGTTTACAGACTGGACGGGCGGCCAATTTGT
TGCCGTCGTTGTTCGTGAAAGGGCCCCCAACAGTCGTCCTGGGGAGCTTT
TTAATGCACCGGCTGGAGGGGCCGAGGCCTGGGACCTTCATAGGGCCGGC
AGAGGATACGAGGAGGAAGTTGGACGCGATAAAGATGAAGAAGGTGTACG
GAAGAGTGCTAGATACGACGACGGGTTTGGGGTACACGGCCATTGCGGCG
GCGAGGTGTGCGCATGTGTCGGAGGTGGTGACGATTGAGGCGGACCAGGC
CTCGCTGGAGATGAGCCGTTACAACCCGTGGAGTAGTGATTTGTATTCGT
CCTCCTCATCGTCGTTGTCATCATCGTATTCGTCGTCGATCTCGTCTTCG
AGGAGGGGGGTGGGGGAAAACGATGAGGACGACGACGAGGATGAGGATGG
CATTGCTCCCATTCGGCTCGTCCAAGGCGACGTCTGTCAGCTCATTCACT
CCTTCCGCGATGGGCATTTTGCGGCTGTCATGCACGACCCCCCAGCAATG
GCCCTGTCGCGCGCCACCTTCAATCTGTACTCTCCTGCGTTCTATTCGCA
GCTGTACCGGGTGCTGAGGTGGAGGGGCCGGCTCTTTCATTTTGTGGGGG
GGCATCCCAAGGCCAAGGAAAGTGGGAGGCTGTACAAGACTGTAGTCCAG
CGACTGGAGGCCGCTGGTTTCAAAAGAGTGATGATTCAAGCGTCAGCTCA
GGGAGTCGTTGCGGAGAAAGGGGAAGATCGGAAGAGCAAGAAGATCTTGC
ATGCCCGAGGTGGAGGAGGAGGGGGGGAGGGAGGGAAGGAGGGAGGAAAG
GCCCAGCGGTTGAGGGCCGAGATGGGAGTGATATTGGGGTTGGAGCACAT
GGTGGCGGCGGAGAAGGCGGCACAGGAAGAGGGTGGCAGCGTAGAGGACT
ATGGGCAAGGGGATTAGCGAGGGATGTTGGAGAGGGAAAGGAAGACGGAG
GGGAAGGAGTAAGAGGAGGGAGGCAGGCAGGCTGGCAGGCAGGGACTGGG
AGGGAGATGGTGAAGAAGGTACTGTAACATGTGTGTAGAGCCTGGGTCGA
TCATTGTAAAAATAAAGTCGAGTTTTGA

protein sequence of jgi.p|Nanoce1779_2|291647

>mRNA_2025-protein ID=mRNA_2025-protein|Name=jgi.p|Nanoce1779_2|291647|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MMVKPCRRRLAAAAPRLVCVMLILHLHVLLGEAFQGPVSKRQHFRQQQQQ
QQQQQQQQPHLLSCGVVQKTDQFMTIAAAGSSTSTTEAHTAGSTSTMAPP
VAPTTTTKSSSPQHSSTSSSASSSPSSSSSSSSRPLQGTLLETRPYLPSQ
FLTPPLSTAESSRLAVTAAIHKHQKKKAVPRHINASPIQEEVTERKEEGG
KAREFVTIGVISHHEALELLCLREGLGGRGGRKGLYYHEGVSLDLGRTET
MVVVVEEGIAVPIYQKENHLYYHHHNPRGGGGRQPALVASWEELEDIVAQ
AHRGEPGCFALYADGTQPWRISAISLQTGRAANLLPSLFVKGPPTVVLGS
FLMHRLEGPRPGTFIGPAEDTRRKLDAIKMKKVYGRVLDTTTGLGYTAIA
AARCAHVSEVVTIEADQASLEMSRYNPWSSDLYSSSSSSLSSSYSSSISS
SRRGVGENDEDDDEDEDGIAPIRLVQGDVCQLIHSFRDGHFAAVMHDPPA
MALSRATFNLYSPAFYSQLYRVLRWRGRLFHFVGGHPKAKESGRLYKTVV
QRLEAAGFKRVMIQASAQGVVAEKGEDRKSKKILHARGGGGGGEGGKEGG
KAQRLRAEMGVILGLEHMVAAEKAAQEEGGSVEDYGQGD*

mRNA from alignment at scaffold_4:588378..591119+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2025 ID=mRNA_2025|Name=jgi.p|Nanoce1779_2|291647|organism=Nannochloropsis oceanica|type=mRNA|length=2742bp|location=Sequence derived from alignment at scaffold_4:588378..591119+ (Nannochloropsis oceanica)
CCTTCGGGAGGCCCATGTTGTCATGTTCTTCCTTTTCGCGGGCTCCCTGT
TGGCAGTAAGGTCAGTCAGTCGGAATGCCTTGCAATAAAGCGGTCGAAAC
ACGCTGAAATTAATATGCCCTGATCAAAGAACGAATACCACGTTATCTCT
TTTCGTGTTAGAAAGCCCATTCCGCCCCATAGCGTCGCCTGGACAGCGAA
TTGCCGCTTGTTCACACTTGCACTGATCTTTTTCTGCCAGGCTGCGGCAT
CAGCAGCAGCGGCTGCGGCATCAGCAGCAGCGGCTGCGGCATCAGCAGCA
GCGGCTGCGGCATCTAGTGACTGTGTTGGTTGCATGTCTCTCCTGTCCAT
TAATGTGTGGGTGTACTAATGTGTGGGTGTACTACTTCGCGTTCAGGGGA
AAGCCGTAGGGAGGAACTATGCTGATCGCCAGCGGGCTGAAGAGCGAACC
TAACATTCCTCTGTCACACGACCACCAAATACACGCCACGCTTCACCCTC
GTGCACCACACAACCCGCACATAGACACAGGAGGGTCCCTGTTGCCAAGG
GCGGCATCTGGATCCGCTCGTCCCGTGTCAGCAGTCCCCACCGCAGCAAC
AACGCCTCCTCGCTTTTCGTGTGCCAGCGCAGCGAAAGAGGCGCAACAGA
CACGAACAGAAATGATGGTCAAGCCCTGCAGGAGAAGACTAGCGGCGGCG
GCCCCGCGCCTGGTCTGCGTCATGCTTATCCTTCATCTACATGTCCTCCT
CGGTGAGGCTTTTCAGGGACCTGTAAGCAAGCGGCAGCATTTCCGGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCCCATCTTCTTTCG
TGCGGGGTCGTGCAGAAGACGGATCAATTCATGACCATCGCAGCCGCCGG
CTCAAGCACCAGCACTACCGAAGCGCATACAGCAGGGAGCACTTCCACCA
TGGCTCCGCCTGTGGCACCCACCACTACCACCAAGTCTTCTTCCCCCCAA
CACTCGTCCACATCATCGTCCGCCTCCTCCTCCCCCTCCTCTTCCTCCTC
CTCCTCCTCCAGGCCCCTCCAAGGAACCTTGTTGGAGACCAGGCCATACC
TACCATCTCAATTTTTAACACCGCCTTTGTCCACCGCCGAATCCTCCCGT
TTGGCCGTCACGGCTGCAATACACAAGCACCAGAAGAAGAAGGCAGTACC
CCGCCATATCAATGCTTCACCCATTCAAGAAGAGGTGACAGAACGGAAAG
AGGAGGGAGGTAAAGCAAGGGAATTCGTGACTATTGGTGTCATCAGTCAT
CACGAGGCTCTGGAGCTGCTATGTCTGCGGGAGGGCCTAGGGGGGAGGGG
GGGAAGGAAGGGGCTCTACTACCACGAAGGCGTCTCCCTCGACTTGGGCC
GAACCGAAACCATGGTGGTGGTGGTCGAAGAAGGCATTGCTGTACCAATC
TATCAAAAAGAGAATCATCTGTATTATCACCACCACAACCCTCGAGGAGG
GGGAGGACGACAACCGGCGCTGGTTGCCAGCTGGGAGGAACTCGAAGACA
TAGTCGCCCAAGCGCACCGAGGCGAGCCGGGATGCTTTGCCCTTTACGCG
GACGGCACTCAGCCGTGGAGAATAAGCGCGATAAGTTTACAGACTGGACG
GGCGGCCAATTTGTTGCCGTCGTTGTTCGTGAAAGGGCCCCCAACAGTCG
TCCTGGGGAGCTTTTTAATGCACCGGCTGGAGGGGCCGAGGCCTGGGACC
TTCATAGGGCCGGCAGAGGATACGAGGAGGAAGTTGGACGCGATAAAGAT
GAAGAAGGTGTACGGAAGAGTGCTAGATACGACGACGGGTTTGGGGTACA
CGGCCATTGCGGCGGCGAGGTGTGCGCATGTGTCGGAGGTGGTGACGATT
GAGGCGGACCAGGCCTCGCTGGAGATGAGCCGTTACAACCCGTGGAGTAG
TGATTTGTATTCGTCCTCCTCATCGTCGTTGTCATCATCGTATTCGTCGT
CGATCTCGTCTTCGAGGAGGGGGGTGGGGGAAAACGATGAGGACGACGAC
GAGGATGAGGATGGCATTGCTCCCATTCGGCTCGTCCAAGGCGACGTCTG
TCAGCTCATTCACTCCTTCCGCGATGGGCATTTTGCGGCTGTCATGCACG
ACCCCCCAGCAATGGCCCTGTCGCGCGCCACCTTCAATCTGTACTCTCCT
GCGTTCTATTCGCAGCTGTACCGGGTGCTGAGGTGGAGGGGCCGGCTCTT
TCATTTTGTGGGGGGGCATCCCAAGGCCAAGGAAAGTGGGAGGCTGTACA
AGACTGTAGTCCAGCGACTGGAGGCCGCTGGTTTCAAAAGAGTGATGATT
CAAGCGTCAGCTCAGGGAGTCGTTGCGGAGAAAGGGGAAGATCGGAAGAG
CAAGAAGATCTTGCATGCCCGAGGTGGAGGAGGAGGGGGGGAGGGAGGGA
AGGAGGGAGGAAAGGCCCAGCGGTTGAGGGCCGAGATGGGAGTGATATTG
GGGTTGGAGCACATGGTGGCGGCGGAGAAGGCGGCACAGGAAGAGGGTGG
CAGCGTAGAGGACTATGGGCAAGGGGATTAGCGAGGGATGTTGGAGAGGG
AAAGGAAGACGGAGGGGAAGGAGTAAGAGGAGGGAGGCAGGCAGGCTGGC
AGGCAGGGACTGGGAGGGAGATGGTGAAGAAGGTACTGTAACATGTGTGT
AGAGCCTGGGTCGATCATTGTAAAAATAAAGTCGAGTTTTGA

Coding sequence (CDS) from alignment at scaffold_4:588378..591119+

>mRNA_2025 ID=mRNA_2025|Name=jgi.p|Nanoce1779_2|291647|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_4:588378..591119+ (Nannochloropsis oceanica)
ATGATGGTCAAGCCCTGCAGGAGAAGACTAGCGGCGGCGGCCCCGCGCCT
GGTCTGCGTCATGCTTATCCTTCATCTACATGTCCTCCTCGGTGAGGCTT
TTCAGGGACCTGTAAGCAAGCGGCAGCATTTCCGGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACCCCATCTTCTTTCGTGCGGGGTCGT
GCAGAAGACGGATCAATTCATGACCATCGCAGCCGCCGGCTCAAGCACCA
GCACTACCGAAGCGCATACAGCAGGGAGCACTTCCACCATGGCTCCGCCT
GTGGCACCCACCACTACCACCAAGTCTTCTTCCCCCCAACACTCGTCCAC
ATCATCGTCCGCCTCCTCCTCCCCCTCCTCTTCCTCCTCCTCCTCCTCCA
GGCCCCTCCAAGGAACCTTGTTGGAGACCAGGCCATACCTACCATCTCAA
TTTTTAACACCGCCTTTGTCCACCGCCGAATCCTCCCGTTTGGCCGTCAC
GGCTGCAATACACAAGCACCAGAAGAAGAAGGCAGTACCCCGCCATATCA
ATGCTTCACCCATTCAAGAAGAGGTGACAGAACGGAAAGAGGAGGGAGGT
AAAGCAAGGGAATTCGTGACTATTGGTGTCATCAGTCATCACGAGGCTCT
GGAGCTGCTATGTCTGCGGGAGGGCCTAGGGGGGAGGGGGGGAAGGAAGG
GGCTCTACTACCACGAAGGCGTCTCCCTCGACTTGGGCCGAACCGAAACC
ATGGTGGTGGTGGTCGAAGAAGGCATTGCTGTACCAATCTATCAAAAAGA
GAATCATCTGTATTATCACCACCACAACCCTCGAGGAGGGGGAGGACGAC
AACCGGCGCTGGTTGCCAGCTGGGAGGAACTCGAAGACATAGTCGCCCAA
GCGCACCGAGGCGAGCCGGGATGCTTTGCCCTTTACGCGGACGGCACTCA
GCCGTGGAGAATAAGCGCGATAAGTTTACAGACTGGACGGGCGGCCAATT
TGTTGCCGTCGTTGTTCGTGAAAGGGCCCCCAACAGTCGTCCTGGGGAGC
TTTTTAATGCACCGGCTGGAGGGGCCGAGGCCTGGGACCTTCATAGGGCC
GGCAGAGGATACGAGGAGGAAGTTGGACGCGATAAAGATGAAGAAGGTGT
ACGGAAGAGTGCTAGATACGACGACGGGTTTGGGGTACACGGCCATTGCG
GCGGCGAGGTGTGCGCATGTGTCGGAGGTGGTGACGATTGAGGCGGACCA
GGCCTCGCTGGAGATGAGCCGTTACAACCCGTGGAGTAGTGATTTGTATT
CGTCCTCCTCATCGTCGTTGTCATCATCGTATTCGTCGTCGATCTCGTCT
TCGAGGAGGGGGGTGGGGGAAAACGATGAGGACGACGACGAGGATGAGGA
TGGCATTGCTCCCATTCGGCTCGTCCAAGGCGACGTCTGTCAGCTCATTC
ACTCCTTCCGCGATGGGCATTTTGCGGCTGTCATGCACGACCCCCCAGCA
ATGGCCCTGTCGCGCGCCACCTTCAATCTGTACTCTCCTGCGTTCTATTC
GCAGCTGTACCGGGTGCTGAGGTGGAGGGGCCGGCTCTTTCATTTTGTGG
GGGGGCATCCCAAGGCCAAGGAAAGTGGGAGGCTGTACAAGACTGTAGTC
CAGCGACTGGAGGCCGCTGGTTTCAAAAGAGTGATGATTCAAGCGTCAGC
TCAGGGAGTCGTTGCGGAGAAAGGGGAAGATCGGAAGAGCAAGAAGATCT
TGCATGCCCGAGGTGGAGGAGGAGGGGGGGAGGGAGGGAAGGAGGGAGGA
AAGGCCCAGCGGTTGAGGGCCGAGATGGGAGTGATATTGGGGTTGGAGCA
CATGGTGGCGGCGGAGAAGGCGGCACAGGAAGAGGGTGGCAGCGTAGAGG
ACTATGGGCAAGGGGATTAG

Synonyms

Publications