jgi.p|Nanoce1779_2|578064, mRNA_1822 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578064
Unique NamemRNA_1822
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1063
Alignment locationscaffold_4:96189..97814 -

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Properties
Property NameValue
TranscriptId578150
TrackFilteredModels2
ProteinId578064
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:96189..97814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578064gene_1822Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578064mRNA_1822-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1822CDS_1822Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1822 ID=mRNA_1822|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
ACAGGTGCATACAGGCAACCTCCACCGAGGAGTCCCTCCGCCTCTGCGCC
CCTCCCTTCCTCCTTCCCAGTCCATGCCTGCCGCCGCCTCTGCCGCCGCT
TCGGCTGCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGGCTTGCT
CAAGACGAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGTTTTACT
TTCCGGGCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTTCATTGG
GCTCGAGTGCTGGAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTAAA
CCTTAGGGCGAGTAAGATTCAATCGGACTATACGCAGCAGGATGGAGAGC
ACAGCTTGCACCAAGGCAAGTGGGACTGGCATTCTTACGTTCTCAAAGGC
CAGGTCCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGCCGCCTCCT
CCAAGAATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCCCTTCTCCT
TCTCCTTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCCCTCATTCG
GGTCCTTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATCGTGCCCAA
GAGAAAGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAACATCTTCTG
CTTCAACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCCCTCCTATG
GACGAATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCCTGTGGCAT
TCGTATAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATGCTTGGTCT
TTGACGACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGGAAGAACGA
GTATTGCTGCTGGTGGACTTCTGGCATCCCGAAATCGACCGCGAGGAGCG
GGTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGA
AAGGAGGATGAGGAAGGGAGGGAGGGAGGGAGGGAAACAGAGAGAGATCC
GCTTCGGTATATAATAATATGAAATGGCTCAGGCCCACATGAAATGAAAT
AAATGGAAAATGG
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protein sequence of jgi.p|Nanoce1779_2|578064

>mRNA_1822-protein ID=mRNA_1822-protein|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MPAAASAAASAARRQLQATIVKSGLLKTNAGVVPRPSPSLFYFPGITSKP
VHAASNFHWARVLEEEHATIKKEYLNLRASKIQSDYTQQDGEHSLHQGKW
DWHSYVLKGQVQAPFAEHCPETSRLLQEFHKQAFLMLGTPFSFSFFSTLH
AQSVIAPHSGPSNLRLRCHLPIIVPKRKGKTGGKADGSQTSSASTPGGAS
SPPSSSPPMDEYDSLEEIQATVPCGIRIGDQVRAWEEGKCLVFDDAYEHE
VWNRTEEERVLLLVDFWHPEIDREERVAIQGMFDYAAKQGWMKGG*
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mRNA from alignment at scaffold_4:96189..97814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1822 ID=mRNA_1822|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_4:96189..97814- (Nannochloropsis oceanica)
ACAGGTGCATACAGGCAACCTCCACCGAGGAGTCCCTCCGCCTCTGCGCC
CCTCCCTTCCTCCTTCCCAGTCCATGCCTGCCGCCGCCTCTGCCGCCGCT
TCGGCTGCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGGCTTGCT
CAAGACGAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGTTTTACT
TTCCGGGCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTTCATTGG
GCTCGAGTGTACGTATGCGGAGAGTATTGGGAGCAGGCAAGGGGAGGTGT
TGGGATGAGAGGAGTACGACAAATATAATTTTGGATTTTTAAAAGCAGGC
ATGACGTTCTTGTCTGATCGTGTGTCTCTGCCCCCCTTGTTTTTTGGTCC
CACGCAGGCTGGAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTAAAC
CTTAGGGCGAGTAAGATTCAATCGGACTATACGCAGCAGGATGGAGAGCA
CAGCTTGCACCAAGGTCAGTGTGGGGAACGGGAGGGAGTTGTAGGTACCG
CGGGAGAGGGGGAGGGAGGGATGGAGGCGCATAAGGCTTGACTAGACATA
AGAAATGTTTCTGTGTCGTATAACGAATTCCTCCTTCCTCTGTCTTGTGC
CTTTTCCTCCCTATTCCTATCAGGCAAGTGGGACTGGCATTCTTACGTTC
TCAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGC
CGCCTCCTCCAAGAATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCC
CTTCTCCTTCTCCTTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCC
CTCATTCGGGTCCTTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATC
GTGCCCAAGAGAAAGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAAC
ATCTTCTGCTTCAACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCC
CTCCTATGGACGAATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCC
TGTGGCATTCGTATAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATG
CTTGGTCTTTGACGACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGG
AAGAACGAGTATTGCTGCTGGTGGACTTCTGGCATGTAAGCTAGGATGTG
ATGAAGAGCTGTATGTGTTTAATTTGTTTTATCATGTGTGTGGTGCCATT
GCCTTGTTCTTCTCGTTCTTCTTACATGTCTTTGCTCGTTCTGCTTGCTT
TCCTCTCTGTCCTCTGTCCTGTGGGTCGGCAGCGAGGGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAAGACCGACGCAGGAAGCCACTCGTTTTAC
ACCTATGCTCACTACCACCACTCGTTTCATATTTCAACAGCCCGAAATCG
ACCGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAG
CAGGGTTGGATGAAAGGAGGATGAGGAAGGGAGGGAGGGAGGGAGGGAAA
CAGAGAGAGATCCGCTTCGGTATATAATAATATGAAATGGCTCAGGCCCA
CATGAAATGAAATAAATGGAAAATGG
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Coding sequence (CDS) from alignment at scaffold_4:96189..97814-

>mRNA_1822 ID=mRNA_1822|Name=jgi.p|Nanoce1779_2|578064|organism=Nannochloropsis oceanica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_4:96189..97814- (Nannochloropsis oceanica)
CCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGATTA
TGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGAGCAAGTGGGACTGGCA
TTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGCATTGCC
CCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGCAAGCCTTCTTGATG
CTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACTCTGCATGCCCAGAG
TGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAGGCTGCGGTGCCATT
TGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGGGAGGGAAGGCGGAT
GGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGGGCTTCCTCCCCCCC
TTCCTCCTCCCCTCCTATGGACGAATACGACTCCCTGGAGGAGATTCAAG
CCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAGTTCGGGCGTGGGAG
GAGGGGAAATGCTTGGTCTTTGACGACGCCTACGAGCACGAGGTCTGGAA
TCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGACTTCTGGCATGCTG
GAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTAAACCTTAGGGCGAG
TAAGATTCAATCGGACTATACGCAGCAGGATGGAGAGCACAGCTTGCACC
AAGATGCCTGCCGCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACT
GCAAGCCACCATTGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGG
TGCCTCGTCCATCTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAG
CCCGTGCATGCCGCCAGCAACTTTCATTGGGCTCGAGTCCCGAAATCGAC
CGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAGCA
GGGTTGGATGAAAGGAGGATGAGCAAGTGGGACTGGCATTCTTACGTTCT
CAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGCC
GCCTCCTCCAAGAATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCCC
TTCTCCTTCTCCTTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCCC
TCATTCGGGTCCTTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATCG
TGCCCAAGAGAAAGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAACA
TCTTCTGCTTCAACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCCC
TCCTATGGACGAATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCCT
GTGGCATTCGTATAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATGC
TTGGTCTTTGACGACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGGA
AGAACGAGTATTGCTGCTGGTGGACTTCTGGCATGCTGGAGGAGGAGCAC
GCGACGATCAAGAAGGAGTACTTAAACCTTAGGGCGAGTAAGATTCAATC
GGACTATACGCAGCAGGATGGAGAGCACAGCTTGCACCAAGATGCCTGCC
GCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACTGCAAGCCACCAT
TGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGGTGCCTCGTCCAT
CTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAGCCCGTGCATGCC
GCCAGCAACTTTCATTGGGCTCGAGTCCCGAAATCGACCGCGAGGAGCGG
GTAGCGATCCAGGGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGAA
AGGAGGATGAGCAAGTGGGACTGGCATTCTTACGTTCTCAAAGGCCAGGT
CCAAGCCCCCTTTGCCGAGCATTGCCCCGAGACCAGCCGCCTCCTCCAAG
AATTTCATAAGCAAGCCTTCTTGATGCTCGGGACGCCCTTCTCCTTCTCC
TTCTTCTCCACTCTGCATGCCCAGAGTGTGATTGCCCCTCATTCGGGTCC
TTCCAACCTGAGGCTGCGGTGCCATTTGCCCATCATCGTGCCCAAGAGAA
AGGGGAAGACGGGAGGGAAGGCGGATGGGTCTCAAACATCTTCTGCTTCA
ACCCCTGGCGGGGCTTCCTCCCCCCCTTCCTCCTCCCCTCCTATGGACGA
ATACGACTCCCTGGAGGAGATTCAAGCCACTGTCCCCTGTGGCATTCGTA
TAGGTGACCAAGTTCGGGCGTGGGAGGAGGGGAAATGCTTGGTCTTTGAC
GACGCCTACGAGCACGAGGTCTGGAATCGGACGGAGGAAGAACGAGTATT
GCTGCTGGTGGACTTCTGGCATGCTGGAGGAGGAGCACGCGACGATCAAG
AAGGAGTACTTAAACCTTAGGGCGAGTAAGATTCAATCGGACTATACGCA
GCAGGATGGAGAGCACAGCTTGCACCAAGATGCCTGCCGCCGCCTCTGCC
GCCGCTTCGGCTGCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGG
CTTGCTCAAGACGAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGT
TTTACTTTCCGGGCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTT
CATTGGGCTCGAGTCCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAG
GGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGAGC
AAGTGGGACTGGCATTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTT
TGCCGAGCATTGCCCCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGC
AAGCCTTCTTGATGCTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACT
CTGCATGCCCAGAGTGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAG
GCTGCGGTGCCATTTGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGG
GAGGGAAGGCGGATGGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGG
GCTTCCTCCCCCCCTTCCTCCTCCCCTCCTATGGACGAATACGACTCCCT
GGAGGAGATTCAAGCCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAG
TTCGGGCGTGGGAGGAGGGGAAATGCTTGGTCTTTGACGACGCCTACGAG
CACGAGGTCTGGAATCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGA
CTTCTGGCATGCTGGAGGAGGAGCACGCGACGATCAAGAAGGAGTACTTA
AACCTTAGGGCGAGTAAGATTCAATCGGACTATACGCAGCAGGATGGAGA
GCACAGCTTGCACCAAGATGCCTGCCGCCGCCTCTGCCGCCGCTTCGGCT
GCCAGAAGGCAACTGCAAGCCACCATTGTCAAGAGCGGCTTGCTCAAGAC
GAATGCGGGGGTGGTGCCTCGTCCATCTCCTTCCCTGTTTTACTTTCCGG
GCATCACATCCAAGCCCGTGCATGCCGCCAGCAACTTTCATTGGGCTCGA
GT
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Synonyms
Publications