jgi.p|Nanoce1779_2|578784, mRNA_2026 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578784
Unique NamemRNA_2026
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length542
Alignment locationscaffold_4:592025..592566 +

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Properties
Property NameValue
TranscriptId578870
TrackFilteredModels2
ProteinId578784
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:592025..592566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578784gene_2026Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578784mRNA_2026-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2026CDS_2026Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2026 ID=mRNA_2026|Name=jgi.p|Nanoce1779_2|578784|organism=Nannochloropsis oceanica|type=mRNA|length=542bp
CGGAGATCCTGCCTGGTAACTCTCCCCCCGTTCTTTTTTTTTACTTGATT
GCAAAATCGTTTTCGTTTCTTTGGTTGGTCTGGGGGTCGATGTCTAATCG
AAGAAGGTATGTCTTTGTTTGGTTATCTCCCCTTGCTTCCCTATCCTTTT
CGCTGACAAAACTGATGCTTCGACATTTGTTGCCTTTCAAGGGAAGGCTT
TTCCTTATCTCTCTAGCTGTACATACAATACTCATACTCCTCCTCCTCCA
TCCTCCACCTCCACTTCTTGTTTTTTTTCTTTACTCCTCTTCTTTCTCCT
TCCTCTTCTCCCCCTCCTCTGCCACCTTGACCACACCTCAGAGATAGCAG
AGAAGAATGATATAATGTTTGGTAGGCCTCTCCTCCCTCCTCCCCAAATT
CCCCCCTCCTCTCCCTCCCACCTCACATCACACTACACCGGCCCAACCCA
CCACCCCCACGCTGCTGCTGCTGCTGCTGCTGAGGATCCGGCATCGCAAC
AGCCCTCCCCATATACCCCCTCAGCATTGAATAGGCCTGTCC
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protein sequence of jgi.p|Nanoce1779_2|578784

>mRNA_2026-protein ID=mRNA_2026-protein|Name=jgi.p|Nanoce1779_2|578784|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MSNRRRYVFVWLSPLASLSFSLTKLMLRHLLPFKGRLFLISLAVHTILIL
LLLHPPPPLLVFFLYSSSFSFLFSPSSATLTTPQR*
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mRNA from alignment at scaffold_4:592025..592566+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2026 ID=mRNA_2026|Name=jgi.p|Nanoce1779_2|578784|organism=Nannochloropsis oceanica|type=mRNA|length=542bp|location=Sequence derived from alignment at scaffold_4:592025..592566+ (Nannochloropsis oceanica)
CGGAGATCCTGCCTGGTAACTCTCCCCCCGTTCTTTTTTTTTACTTGATT
GCAAAATCGTTTTCGTTTCTTTGGTTGGTCTGGGGGTCGATGTCTAATCG
AAGAAGGTATGTCTTTGTTTGGTTATCTCCCCTTGCTTCCCTATCCTTTT
CGCTGACAAAACTGATGCTTCGACATTTGTTGCCTTTCAAGGGAAGGCTT
TTCCTTATCTCTCTAGCTGTACATACAATACTCATACTCCTCCTCCTCCA
TCCTCCACCTCCACTTCTTGTTTTTTTTCTTTACTCCTCTTCTTTCTCCT
TCCTCTTCTCCCCCTCCTCTGCCACCTTGACCACACCTCAGAGATAGCAG
AGAAGAATGATATAATGTTTGGTAGGCCTCTCCTCCCTCCTCCCCAAATT
CCCCCCTCCTCTCCCTCCCACCTCACATCACACTACACCGGCCCAACCCA
CCACCCCCACGCTGCTGCTGCTGCTGCTGCTGAGGATCCGGCATCGCAAC
AGCCCTCCCCATATACCCCCTCAGCATTGAATAGGCCTGTCC
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Coding sequence (CDS) from alignment at scaffold_4:592025..592566+

>mRNA_2026 ID=mRNA_2026|Name=jgi.p|Nanoce1779_2|578784|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_4:592025..592566+ (Nannochloropsis oceanica)
ATGTCTAATCGAAGAAGGTATGTCTTTGTTTGGTTATCTCCCCTTGCTTC
CCTATCCTTTTCGCTGACAAAACTGATGCTTCGACATTTGTTGCCTTTCA
AGGGAAGGCTTTTCCTTATCTCTCTAGCTGTACATACAATACTCATACTC
CTCCTCCTCCATCCTCCACCTCCACTTCTTGTTTTTTTTCTTTACTCCTC
TTCTTTCTCCTTCCTCTTCTCCCCCTCCTCTGCCACCTTGACCACACCTC
AGAGATAG
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Synonyms
Publications