jgi.p|Nanoce1779_2|659679, mRNA_1901 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|659679
Unique NamemRNA_1901
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1245
Alignment locationscaffold_4:305833..307077 +

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Properties
Property NameValue
TranscriptId659765
TrackFilteredModels2
ProteinId659679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:305833..307077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659679gene_1901Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659679mRNA_1901-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1901CDS_1901Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1901 ID=mRNA_1901|Name=jgi.p|Nanoce1779_2|659679|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATCGACCATCTTCTTCTTATCATCCTTATGCTGGTACCGGTCGTGGTCTT
GGATTCCGCACAGGCGGTCGTCTGGACGATACACAATCTCGCATGATACT
GCTTCGACCTCCTCATCATCTCTTCCCCAACCCCCTCATCCTGCGCACCA
CCCACTACACAGTCAAGCATGAGCAGCACCGATCAGGTATCACCACCACT
GCACGTACCGATATCAGTGTCAGTGCCAGGGAACGACACAGCATCCACCC
TGCCCGCCTTCCGCAAGAAACCCATCGTCCTCCTCTTCATGGGCATGGCG
GGCAGCGGCAAGACAACCCTGGTCCAGCGCCTCAATCTGCATCTCAACGC
CAATGGTACCAAAAGCTACTATGTGAACCTCGATCCGGCCGTCAAGTCCG
TCCCGTTCGCAGCCAATATCGACATCCGTGACACGGTCAACTACAAGGAA
GTGATGAACCAGTACGAACTCGGGCCTAATGGAGCCATCATGACATCCCT
CAACCTCTTCGCCACCCGCTTTGATCAAGTGCTTACTATCCTGGAAAAAC
GAGCTCCTGAATTGGAATATGTCCTCGTGGACACCCCCGGGCAAATCGAG
GTTTTCACTTGGTCAGCCTCCGGTGCAATCATTACTGAGGCACTCGCTAC
ATCCTTCCCAACCATCTTAATTTACATTGTTGATACGCCTCGCACAGCCT
CCCCGACCACCTTTATGAGTAACATGCTCTATGCCTGTTCTATCTTGTAT
AAGACGCGGTTGCCGATTGTGTTGACTTTCAATAAGATCGATATTCTGTC
ACATGCCTTCGCACAGGAATGGATGGGAGATTTTGAGAAATTTCAGGAGG
GCTTGGATAGGCAAGGGGATGACATGGGGTACTCGAGCACGTTGATTCGG
TCCATGTCATTAGTGTTAGATGAATTCTATAAGACACTCAGGAATGTGGG
CGTGTCGGCAGCGAGTGGAGAGGGTGTGAGTGATTTTTTCGAGGCCGTGG
ATGAGGCGGCGAGGGAGTTTGAGAGGGAATATTTGCCTGACTTGGTTGAG
AGGAAGGAGAAGAGGGAAGGGGAACAGGAGGAGATGAAAAACAGGGAGAT
GGAACGATTGATGAAGGACTTGAAGGTGGAGGGTGGTGGAGGAGGAGGAA
GAGGAGGAGGAGGAGAAGAACGGGGGGGGGGGGATAGAGGACGGAGGGGG
GGGGGGGGAAGGGAAGGAGGGGAGCAGATAAGGGTAGAGAAATGA
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protein sequence of jgi.p|Nanoce1779_2|659679

>mRNA_1901-protein ID=mRNA_1901-protein|Name=jgi.p|Nanoce1779_2|659679|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSSTDQVSPPLHVPISVSVPGNDTASTLPAFRKKPIVLLFMGMAGSGKTT
LVQRLNLHLNANGTKSYYVNLDPAVKSVPFAANIDIRDTVNYKEVMNQYE
LGPNGAIMTSLNLFATRFDQVLTILEKRAPELEYVLVDTPGQIEVFTWSA
SGAIITEALATSFPTILIYIVDTPRTASPTTFMSNMLYACSILYKTRLPI
VLTFNKIDILSHAFAQEWMGDFEKFQEGLDRQGDDMGYSSTLIRSMSLVL
DEFYKTLRNVGVSAASGEGVSDFFEAVDEAAREFEREYLPDLVERKEKRE
GEQEEMKNREMERLMKDLKVEGGGGGGRGGGGEERGGGDRGRRGGGGREG
GEQIRVEK*
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mRNA from alignment at scaffold_4:305833..307077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1901 ID=mRNA_1901|Name=jgi.p|Nanoce1779_2|659679|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp|location=Sequence derived from alignment at scaffold_4:305833..307077+ (Nannochloropsis oceanica)
ATCGACCATCTTCTTCTTATCATCCTTATGCTGGTACCGGTCGTGGTCTT
GGATTCCGCACAGGCGGTCGTCTGGACGATACACAATCTCGCATGATACT
GCTTCGACCTCCTCATCATCTCTTCCCCAACCCCCTCATCCTGCGCACCA
CCCACTACACAGTCAAGCATGAGCAGCACCGATCAGGTATCACCACCACT
GCACGTACCGATATCAGTGTCAGTGCCAGGGAACGACACAGCATCCACCC
TGCCCGCCTTCCGCAAGAAACCCATCGTCCTCCTCTTCATGGGCATGGCG
GGCAGCGGCAAGACAACCCTGGTCCAGCGCCTCAATCTGCATCTCAACGC
CAATGGTACCAAAAGCTACTATGTGAACCTCGATCCGGCCGTCAAGTCCG
TCCCGTTCGCAGCCAATATCGACATCCGTGACACGGTCAACTACAAGGAA
GTGATGAACCAGTACGAACTCGGGCCTAATGGAGCCATCATGACATCCCT
CAACCTCTTCGCCACCCGCTTTGATCAAGTGCTTACTATCCTGGAAAAAC
GAGCTCCTGAATTGGAATATGTCCTCGTGGACACCCCCGGGCAAATCGAG
GTTTTCACTTGGTCAGCCTCCGGTGCAATCATTACTGAGGCACTCGCTAC
ATCCTTCCCAACCATCTTAATTTACATTGTTGATACGCCTCGCACAGCCT
CCCCGACCACCTTTATGAGTAACATGCTCTATGCCTGTTCTATCTTGTAT
AAGACGCGGTTGCCGATTGTGTTGACTTTCAATAAGATCGATATTCTGTC
ACATGCCTTCGCACAGGAATGGATGGGAGATTTTGAGAAATTTCAGGAGG
GCTTGGATAGGCAAGGGGATGACATGGGGTACTCGAGCACGTTGATTCGG
TCCATGTCATTAGTGTTAGATGAATTCTATAAGACACTCAGGAATGTGGG
CGTGTCGGCAGCGAGTGGAGAGGGTGTGAGTGATTTTTTCGAGGCCGTGG
ATGAGGCGGCGAGGGAGTTTGAGAGGGAATATTTGCCTGACTTGGTTGAG
AGGAAGGAGAAGAGGGAAGGGGAACAGGAGGAGATGAAAAACAGGGAGAT
GGAACGATTGATGAAGGACTTGAAGGTGGAGGGTGGTGGAGGAGGAGGAA
GAGGAGGAGGAGGAGAAGAACGGGGGGGGGGGGATAGAGGACGGAGGGGG
GGGGGGGGAAGGGAAGGAGGGGAGCAGATAAGGGTAGAGAAATGA
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Coding sequence (CDS) from alignment at scaffold_4:305833..307077+

>mRNA_1901 ID=mRNA_1901|Name=jgi.p|Nanoce1779_2|659679|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at scaffold_4:305833..307077+ (Nannochloropsis oceanica)
ATGAGCAGCACCGATCAGGTATCACCACCACTGCACGTACCGATATCAGT
GTCAGTGCCAGGGAACGACACAGCATCCACCCTGCCCGCCTTCCGCAAGA
AACCCATCGTCCTCCTCTTCATGGGCATGGCGGGCAGCGGCAAGACAACC
CTGGTCCAGCGCCTCAATCTGCATCTCAACGCCAATGGTACCAAAAGCTA
CTATGTGAACCTCGATCCGGCCGTCAAGTCCGTCCCGTTCGCAGCCAATA
TCGACATCCGTGACACGGTCAACTACAAGGAAGTGATGAACCAGTACGAA
CTCGGGCCTAATGGAGCCATCATGACATCCCTCAACCTCTTCGCCACCCG
CTTTGATCAAGTGCTTACTATCCTGGAAAAACGAGCTCCTGAATTGGAAT
ATGTCCTCGTGGACACCCCCGGGCAAATCGAGGTTTTCACTTGGTCAGCC
TCCGGTGCAATCATTACTGAGGCACTCGCTACATCCTTCCCAACCATCTT
AATTTACATTGTTGATACGCCTCGCACAGCCTCCCCGACCACCTTTATGA
GTAACATGCTCTATGCCTGTTCTATCTTGTATAAGACGCGGTTGCCGATT
GTGTTGACTTTCAATAAGATCGATATTCTGTCACATGCCTTCGCACAGGA
ATGGATGGGAGATTTTGAGAAATTTCAGGAGGGCTTGGATAGGCAAGGGG
ATGACATGGGGTACTCGAGCACGTTGATTCGGTCCATGTCATTAGTGTTA
GATGAATTCTATAAGACACTCAGGAATGTGGGCGTGTCGGCAGCGAGTGG
AGAGGGTGTGAGTGATTTTTTCGAGGCCGTGGATGAGGCGGCGAGGGAGT
TTGAGAGGGAATATTTGCCTGACTTGGTTGAGAGGAAGGAGAAGAGGGAA
GGGGAACAGGAGGAGATGAAAAACAGGGAGATGGAACGATTGATGAAGGA
CTTGAAGGTGGAGGGTGGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAG
AACGGGGGGGGGGGGATAGAGGACGGAGGGGGGGGGGGGGAAGGGAAGGA
GGGGAGCAGATAAGGGTAGAGAAATGA
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Synonyms
Publications