jgi.p|Nanoce1779_2|307738, mRNA_10022 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|307738
Unique NamemRNA_10022
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1068
Alignment locationscaffold_42:71660..72727 -

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Properties
Property NameValue
TranscriptId307824
TrackFilteredModels2
ProteinId307738
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:71660..72727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|307738gene_10022Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|307738mRNA_10022-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10022CDS_10022Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10022 ID=mRNA_10022|Name=jgi.p|Nanoce1779_2|307738|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
AAGCGGCTTATCATTGCATTTTGTGCAACTGGGTATGTGATTTGTGTGTT
TTTTGCTCTGGGAAAAGATGCTTAGGGTGGTACGTCACGGCGCTCCCTTT
TGTCCGAACCCGAGGGCGAAAAGCCATTACAAAGCCCATGCATACTCCTT
TGTGCCGGCAGGCCTTACTAGATGTCTTTGCGTCTCTTATCTATGATCCT
AGCTCCCTCAAAAATCTCTTTCTATCCCTGAAAACGAAGAAGTCGTCTTG
TTTGTGTCGTGTTTCCTTCCTTATCGCTAACCGTCATTCCTCCCCCCTCT
CATCTCACATCCCTCCCTATACGCGCACCACGCCCACGCCTCATTCACAC
GTACACTTACCACACGCTCCACACTCACCTCTGGCACGCTATAACATCTG
CATAGCTTGCACACAGGCTTTAGCTGCGGTCCGAAGCTGCCCGAGGTCCT
TGGCCTTCTGGTCGCGAGCGGGACGGAGAAGGGGCTCGTTCCACCGCCGT
GGGGCTCGCACATTCTCACCACACCCGCTGGGTACACCTAAAACACAAAT
GAAGCCGGTGTCTCCAAACCAACGAATGAGAGTAGAAACGAGCACGGCCA
CGGCGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGGCGCCTTCCCATGG
TACGTTTGGCCGACCGGGAGGGGAAGGAGGAGGGAGTGGAGGGAGAATGC
CAGCAAATGTCACAGAATCTCTAAACCCAGGATCAAACCCGAGGTGGATG
GAAATAGATTTTTCTGTCAAATTCGAGGGGGTTGCCGATCGCTTGTGCCA
GCTCTGGATGTACAAATAAATGAGTGAAAAGGCCATTTGCGTCTCTTTTC
CCCTTGTCTAGTGCTAGTCTTTTCGCCCTCACCTCAAGACTTAACAACAA
TGTGAAAACGACAACCTGCATGGAAAAAAGATTCTGCTCCACTTCTTCTC
GATCCTTCTATACATGCTGTTGGAAATGCTAAACATTTCATGCTTGTGAG
CTTATGAACATCGCCTGTCTTCTTCATCCTCTTTCTGACCCAACATTTCC
CTCCCGTTCTCTACCCTC
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protein sequence of jgi.p|Nanoce1779_2|307738

>mRNA_10022-protein ID=mRNA_10022-protein|Name=jgi.p|Nanoce1779_2|307738|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MHTPLCRQALLDVFASLIYDPSSLKNLFLSLKTKKSSCLCRVSFLIANRH
SSPLSSHIPPYTRTTPTPHSHVHLPHAPHSPLARYNICIACTQALAAVRS
CPRSLAFWSRAGRRRGSFHRRGARTFSPHPLGTPKTQMKPVSPNQRMRVE
TSTATAVPEQRAIVVVGAFPWYVWPTGRGRRREWRENASKCHRISKPRIK
PEVDGNRFFCQIRGGCRSLVPALDVQINE*
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mRNA from alignment at scaffold_42:71660..72727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10022 ID=mRNA_10022|Name=jgi.p|Nanoce1779_2|307738|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp|location=Sequence derived from alignment at scaffold_42:71660..72727- (Nannochloropsis oceanica)
AAGCGGCTTATCATTGCATTTTGTGCAACTGGGTATGTGATTTGTGTGTT
TTTTGCTCTGGGAAAAGATGCTTAGGGTGGTACGTCACGGCGCTCCCTTT
TGTCCGAACCCGAGGGCGAAAAGCCATTACAAAGCCCATGCATACTCCTT
TGTGCCGGCAGGCCTTACTAGATGTCTTTGCGTCTCTTATCTATGATCCT
AGCTCCCTCAAAAATCTCTTTCTATCCCTGAAAACGAAGAAGTCGTCTTG
TTTGTGTCGTGTTTCCTTCCTTATCGCTAACCGTCATTCCTCCCCCCTCT
CATCTCACATCCCTCCCTATACGCGCACCACGCCCACGCCTCATTCACAC
GTACACTTACCACACGCTCCACACTCACCTCTGGCACGCTATAACATCTG
CATAGCTTGCACACAGGCTTTAGCTGCGGTCCGAAGCTGCCCGAGGTCCT
TGGCCTTCTGGTCGCGAGCGGGACGGAGAAGGGGCTCGTTCCACCGCCGT
GGGGCTCGCACATTCTCACCACACCCGCTGGGTACACCTAAAACACAAAT
GAAGCCGGTGTCTCCAAACCAACGAATGAGAGTAGAAACGAGCACGGCCA
CGGCGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGGCGCCTTCCCATGG
TACGTTTGGCCGACCGGGAGGGGAAGGAGGAGGGAGTGGAGGGAGAATGC
CAGCAAATGTCACAGAATCTCTAAACCCAGGATCAAACCCGAGGTGGATG
GAAATAGATTTTTCTGTCAAATTCGAGGGGGTTGCCGATCGCTTGTGCCA
GCTCTGGATGTACAAATAAATGAGTGAAAAGGCCATTTGCGTCTCTTTTC
CCCTTGTCTAGTGCTAGTCTTTTCGCCCTCACCTCAAGACTTAACAACAA
TGTGAAAACGACAACCTGCATGGAAAAAAGATTCTGCTCCACTTCTTCTC
GATCCTTCTATACATGCTGTTGGAAATGCTAAACATTTCATGCTTGTGAG
CTTATGAACATCGCCTGTCTTCTTCATCCTCTTTCTGACCCAACATTTCC
CTCCCGTTCTCTACCCTC
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Coding sequence (CDS) from alignment at scaffold_42:71660..72727-

>mRNA_10022 ID=mRNA_10022|Name=jgi.p|Nanoce1779_2|307738|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_42:71660..72727- (Nannochloropsis oceanica)
ATGCATACTCCTTTGTGCCGGCAGGCCTTACTAGATGTCTTTGCGTCTCT
TATCTATGATCCTAGCTCCCTCAAAAATCTCTTTCTATCCCTGAAAACGA
AGAAGTCGTCTTGTTTGTGTCGTGTTTCCTTCCTTATCGCTAACCGTCAT
TCCTCCCCCCTCTCATCTCACATCCCTCCCTATACGCGCACCACGCCCAC
GCCTCATTCACACGTACACTTACCACACGCTCCACACTCACCTCTGGCAC
GCTATAACATCTGCATAGCTTGCACACAGGCTTTAGCTGCGGTCCGAAGC
TGCCCGAGGTCCTTGGCCTTCTGGTCGCGAGCGGGACGGAGAAGGGGCTC
GTTCCACCGCCGTGGGGCTCGCACATTCTCACCACACCCGCTGGGTACAC
CTAAAACACAAATGAAGCCGGTGTCTCCAAACCAACGAATGAGAGTAGAA
ACGAGCACGGCCACGGCGGTGCCGGAGCAGCGGGCGATCGTGGTCGTGGG
CGCCTTCCCATGGTACGTTTGGCCGACCGGGAGGGGAAGGAGGAGGGAGT
GGAGGGAGAATGCCAGCAAATGTCACAGAATCTCTAAACCCAGGATCAAA
CCCGAGGTGGATGGAAATAGATTTTTCTGTCAAATTCGAGGGGGTTGCCG
ATCGCTTGTGCCAGCTCTGGATGTACAAATAAATGAGTGA
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Synonyms
Publications