jgi.p|Nanoce1779_2|660796, mRNA_10152 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|660796
Unique Name	mRNA_10152
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1886
Alignment location	scaffold_43:170613..172498 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	660882
Track	FilteredModels2
ProteinId	660796

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:170613..172498 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|660796	gene_10152	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|660796	mRNA_10152-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10152	CDS_10152	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:170613..172498-
coding sequence from alignment at scaffold_43:170613..172498-

mRNA sequence

>mRNA_10152 ID=mRNA_10152|Name=jgi.p|Nanoce1779_2|660796|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp
TCTGTGTCGAGAGGTTTAGTATCCGTGTCAGTGGGAAGAGTGAGCAAGTG
TGTGATTGTCAGGGTAGATGTGGGTAGCTGACTTCAATTTCGTAAGGCGT
CAGTCATGCAAATCGCCGCCGCCTTGAAAATGGTAACAGACGACATAAAT
CTCATACACCAAACACATATTTCCCCCTTTCACGACATCATCACAGTATG
TCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAACGCAAGCAGCAGCAA
CAGAAGCAACAACAACAACAACAACGACAACAACAACAACAATCGCACCA
CCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGGGCCGAGACGAGGTA
TCCTCCTCATCCGTTCCTGATCCTCTACCACCACCATTACTATCATCATC
ATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCGGCGTTATTGTTCCT
TTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCTCCACCTGTGCCTTT
CTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACCGATTTTAGATATTG
CCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAGGGAATGGGCCAAGC
CCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATACGATTGGAACGCAAA
GAATGTATGTACCAACATGTGATGTGCAGGGACGGGAAGGACTGTCAGGA
GGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCGCTGTAAGGGTTGTG
TCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAGGGGAAGAGGGGTTG
ACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCATGAGGAAGGGAAGTA
TGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGCGGACGGGGCAAGGG
AGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCGGTAGAGACAAAGAC
GAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAATGCCGTGGGGAGGGA
GGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGAGGAGACGGCAGGCA
CCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTCCCTACGTGGATGTC
GGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTCTTGGATAAGGCGGA
GGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAATGCGGGGTTGCCTC
GCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTCCATTGGACAGGGTT
GGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGGGGGGCCACCAGGGA
GGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAAGAGGAAGAGAGATG
AGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGGTGGCGGGGGATGAG
GAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGAGGGGAAGGACATGG
AAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAAAATGGATGTGGAGG
AGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGGCATTCGGTGTTGAT
GAACGATCTCATCTACAGTCACAAAGGCAGGGGTCATGCGTTGGCAGAGC
GGGTGCGGCAAGTGCTGAGTGAAATGTTTCGTGCAGGATGGCTAGACCCT
TACTTCTCTTCATCTGCATCTCCACCTGCAGGCGCTGCTGACGCTCCCTC
GCCGCCAACATCGATGGTGGCAAAACGAGGGTGGGGAGGAAGACGTGGGG
AAGTGAGGGGGAGAAGAGGAGGAGGACGAGGAGGAGGAAATTGAGTTCCT
GCGGACGAAATGGTCACAATCAGAATATTAAAATGTAACTATTTAAAATA
TGATTTGAATGTAAAAAGAACTATTTATGCGTGGAC

protein sequence of jgi.p|Nanoce1779_2|660796

>mRNA_10152-protein ID=mRNA_10152-protein|Name=jgi.p|Nanoce1779_2|660796|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSSLAITTASSSNASSSNRSNNNNNNDNNNNNRTTNCRGDYESGIEGRDE
VSSSSVPDPLPPPLLSSSSSPPNPPAAHKRRYCSFFRYGRCTRLFPSTCA
FLHEPCPQGLDCTDFRYCQKGHPRAWEDKREWAKPCRFYRAGGFCIRLER
KECMYQHVMCRDGKDCQEGRCQWGHPWEWRCKGCVKCGSDGGRLKKGEEG
LTGAGVLLLSPSHEEGKYDLVLVEEENWDADGAREWGEMGGRISSLGRDK
DENEDDVGAVGGNAVGREEAPVVAARELLEETAGTVQVSVTTIGACPYVD
VGLFHRYRCYLLVLDKAEVSVGVYQQARKNAGLPRSWRETLDMRRFPLDR
VGEEMRMKKGKRRGATREGEGYKSGAGQKKRKRDERGGGEVDQEGEVAGD
EEEEEEEEGMEGGGEGHGNKKVKDKGKGEKMDVEEKEEEEVGGGGGAFGV
DERSHLQSQRQGSCVGRAGAASAE*

mRNA from alignment at scaffold_43:170613..172498-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10152 ID=mRNA_10152|Name=jgi.p|Nanoce1779_2|660796|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at scaffold_43:170613..172498- (Nannochloropsis oceanica)
TCTGTGTCGAGAGGTTTAGTATCCGTGTCAGTGGGAAGAGTGAGCAAGTG
TGTGATTGTCAGGGTAGATGTGGGTAGCTGACTTCAATTTCGTAAGGCGT
CAGTCATGCAAATCGCCGCCGCCTTGAAAATGGTAACAGACGACATAAAT
CTCATACACCAAACACATATTTCCCCCTTTCACGACATCATCACAGTATG
TCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAACGCAAGCAGCAGCAA
CAGAAGCAACAACAACAACAACAACGACAACAACAACAACAATCGCACCA
CCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGGGCCGAGACGAGGTA
TCCTCCTCATCCGTTCCTGATCCTCTACCACCACCATTACTATCATCATC
ATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCGGCGTTATTGTTCCT
TTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCTCCACCTGTGCCTTT
CTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACCGATTTTAGATATTG
CCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAGGGAATGGGCCAAGC
CCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATACGATTGGAACGCAAA
GAATGTATGTACCAACATGTGATGTGCAGGGACGGGAAGGACTGTCAGGA
GGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCGCTGTAAGGGTTGTG
TCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAGGGGAAGAGGGGTTG
ACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCATGAGGAAGGGAAGTA
TGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGCGGACGGGGCAAGGG
AGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCGGTAGAGACAAAGAC
GAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAATGCCGTGGGGAGGGA
GGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGAGGAGACGGCAGGCA
CCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTCCCTACGTGGATGTC
GGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTCTTGGATAAGGCGGA
GGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAATGCGGGGTTGCCTC
GCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTCCATTGGACAGGGTT
GGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGGGGGGCCACCAGGGA
GGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAAGAGGAAGAGAGATG
AGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGGTGGCGGGGGATGAG
GAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGAGGGGAAGGACATGG
AAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAAAATGGATGTGGAGG
AGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGGCATTCGGTGTTGAT
GAACGATCTCATCTACAGTCACAAAGGCAGGGGTCATGCGTTGGCAGAGC
GGGTGCGGCAAGTGCTGAGTGAAATGTTTCGTGCAGGATGGCTAGACCCT
TACTTCTCTTCATCTGCATCTCCACCTGCAGGCGCTGCTGACGCTCCCTC
GCCGCCAACATCGATGGTGGCAAAACGAGGGTGGGGAGGAAGACGTGGGG
AAGTGAGGGGGAGAAGAGGAGGAGGACGAGGAGGAGGAAATTGAGTTCCT
GCGGACGAAATGGTCACAATCAGAATATTAAAATGTAACTATTTAAAATA
TGATTTGAATGTAAAAAGAACTATTTATGCGTGGAC

Coding sequence (CDS) from alignment at scaffold_43:170613..172498-

>mRNA_10152 ID=mRNA_10152|Name=jgi.p|Nanoce1779_2|660796|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_43:170613..172498- (Nannochloropsis oceanica)
ATGTCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAACGCAAGCAGCAG
CAACAGAAGCAACAACAACAACAACAACGACAACAACAACAACAATCGCA
CCACCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGGGCCGAGACGAG
GTATCCTCCTCATCCGTTCCTGATCCTCTACCACCACCATTACTATCATC
ATCATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCGGCGTTATTGTT
CCTTTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCTCCACCTGTGCC
TTTCTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACCGATTTTAGATA
TTGCCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAGGGAATGGGCCA
AGCCCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATACGATTGGAACGC
AAAGAATGTATGTACCAACATGTGATGTGCAGGGACGGGAAGGACTGTCA
GGAGGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCGCTGTAAGGGTT
GTGTCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAGGGGAAGAGGGG
TTGACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCATGAGGAAGGGAA
GTATGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGCGGACGGGGCAA
GGGAGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCGGTAGAGACAAA
GACGAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAATGCCGTGGGGAG
GGAGGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGAGGAGACGGCAG
GCACCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTCCCTACGTGGAT
GTCGGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTCTTGGATAAGGC
GGAGGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAATGCGGGGTTGC
CTCGCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTCCATTGGACAGG
GTTGGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGGGGGGCCACCAG
GGAGGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAAGAGGAAGAGAG
ATGAGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGGTGGCGGGGGAT
GAGGAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGAGGGGAAGGACA
TGGAAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAAAATGGATGTGG
AGGAGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGGCATTCGGTGTT
GATGAACGATCTCATCTACAGTCACAAAGGCAGGGGTCATGCGTTGGCAG
AGCGGGTGCGGCAAGTGCTGAGTGA

Synonyms

Publications