jgi.p|Nanoce1779_2|533760, mRNA_9891 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533760
Unique NamemRNA_9891
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1044
Alignment locationscaffold_45:164578..165621 -

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Properties
Property NameValue
TranscriptId533846
TrackFilteredModels2
ProteinId533760
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:164578..165621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533760gene_9891Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9891CDS_9891Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533760mRNA_9891-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9891 ID=mRNA_9891|Name=jgi.p|Nanoce1779_2|533760|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp
ATGTCCGAGGAACTGCGCCAGAGTTACTTCAATTCGTTCTTGGACGAGTT
GACTTCGTCAGACGATGGATTGCTCAAAGCTGCGGCTGTTACTCTGGCTC
GGAAGAACAAAGGCGGGACATGCAATTTGGAGAAGGATAGAGTGCCCGAT
CCATGGAACCCGAACGATGGGGTCCGCCGGGATATCGGCCTATGTATCGC
GATCAAATCTGACGCGGGCATCCTTGATGAACACATTGCTTTTCACTGGG
CGCAAGGTGTAAGGAAGTTTATTATTTACGACGATGGCTCGAATGACAAT
CCATGGTCAGTTTTGGAGAAGTATGTGGCTCTTGGCATCGTTGAATACCA
CGACATGGCTGGTCATTGGCAAGCAAGCTCCTTCGCACTCCAGCTGAAAG
TACTGAACGAGTGCTTCACAACGTTTCGGGAGCGCGGGCCAGAGGATGGG
ATACGATGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGT
TCCCGGCGAGACCTTGTCCGACACACTCAACGCCAAGTACAAAGGAGAGG
CGTGCTTGCAAATCGCGCGGACATGGTATGGGTCGTCGTTTTACCATCAA
AAGCCTGTCGGTTTAGTCACCGAGACGTATATTCTTGCGTCTCCCGATCA
CGCCGATGGCATGCCTAAATTGATTGCGAACATTCACCCGGAGAACAGGA
CTAGGAACGCCACAGCACTTTTCTCGGTCCATGATTTTGTGAATCAAACC
GTGATTCCTTGTTTACTCAAGAAAGATGTTAAGGACGTGCGGATCAACCA
TTATTTGAGAAGTTTAGAGGAGTATGATAAAAAGGCTTTGGCTGTCAATA
CCCAGAAAGAGAAATACATGGACCCGTTGAAGAAGTTTTTTAAACGGGAC
TGGAATACGCATTTGAGTCTCGCTGCGTCGACTTATGCGTGCCAGGTCCA
TGCTCTATTGGTACAGGTGCAGGAAATGCAGGGTGCGGGGAAGATTCCAG
CGGTGGTAAGGCCAAAGGCATGGAACGAGACTCATACAAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|533760

>mRNA_9891-protein ID=mRNA_9891-protein|Name=jgi.p|Nanoce1779_2|533760|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MSEELRQSYFNSFLDELTSSDDGLLKAAAVTLARKNKGGTCNLEKDRVPD
PWNPNDGVRRDIGLCIAIKSDAGILDEHIAFHWAQGVRKFIIYDDGSNDN
PWSVLEKYVALGIVEYHDMAGHWQASSFALQLKVLNECFTTFRERGPEDG
IRWVMFTDLDEFVLSSVPGETLSDTLNAKYKGEACLQIARTWYGSSFYHQ
KPVGLVTETYILASPDHADGMPKLIANIHPENRTRNATALFSVHDFVNQT
VIPCLLKKDVKDVRINHYLRSLEEYDKKALAVNTQKEKYMDPLKKFFKRD
WNTHLSLAASTYACQVHALLVQVQEMQGAGKIPAVVRPKAWNETHTR*
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mRNA from alignment at scaffold_45:164578..165621-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9891 ID=mRNA_9891|Name=jgi.p|Nanoce1779_2|533760|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp|location=Sequence derived from alignment at scaffold_45:164578..165621- (Nannochloropsis oceanica)
ATGTCCGAGGAACTGCGCCAGAGTTACTTCAATTCGTTCTTGGACGAGTT
GACTTCGTCAGACGATGGATTGCTCAAAGCTGCGGCTGTTACTCTGGCTC
GGAAGAACAAAGGCGGGACATGCAATTTGGAGAAGGATAGAGTGCCCGAT
CCATGGAACCCGAACGATGGGGTCCGCCGGGATATCGGCCTATGTATCGC
GATCAAATCTGACGCGGGCATCCTTGATGAACACATTGCTTTTCACTGGG
CGCAAGGTGTAAGGAAGTTTATTATTTACGACGATGGCTCGAATGACAAT
CCATGGTCAGTTTTGGAGAAGTATGTGGCTCTTGGCATCGTTGAATACCA
CGACATGGCTGGTCATTGGCAAGCAAGCTCCTTCGCACTCCAGCTGAAAG
TACTGAACGAGTGCTTCACAACGTTTCGGGAGCGCGGGCCAGAGGATGGG
ATACGATGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGT
TCCCGGCGAGACCTTGTCCGACACACTCAACGCCAAGTACAAAGGAGAGG
CGTGCTTGCAAATCGCGCGGACATGGTATGGGTCGTCGTTTTACCATCAA
AAGCCTGTCGGTTTAGTCACCGAGACGTATATTCTTGCGTCTCCCGATCA
CGCCGATGGCATGCCTAAATTGATTGCGAACATTCACCCGGAGAACAGGA
CTAGGAACGCCACAGCACTTTTCTCGGTCCATGATTTTGTGAATCAAACC
GTGATTCCTTGTTTACTCAAGAAAGATGTTAAGGACGTGCGGATCAACCA
TTATTTGAGAAGTTTAGAGGAGTATGATAAAAAGGCTTTGGCTGTCAATA
CCCAGAAAGAGAAATACATGGACCCGTTGAAGAAGTTTTTTAAACGGGAC
TGGAATACGCATTTGAGTCTCGCTGCGTCGACTTATGCGTGCCAGGTCCA
TGCTCTATTGGTACAGGTGCAGGAAATGCAGGGTGCGGGGAAGATTCCAG
CGGTGGTAAGGCCAAAGGCATGGAACGAGACTCATACAAGGTAG
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Coding sequence (CDS) from alignment at scaffold_45:164578..165621-

>mRNA_9891 ID=mRNA_9891|Name=jgi.p|Nanoce1779_2|533760|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_45:164578..165621- (Nannochloropsis oceanica)
ATGTCCGAGGAACTGCGCCAGAGTTACTTCAATTCGTTCTTGGACGAGTT
GACTTCGTCAGACGATGGATTGCTCAAAGCTGCGGCTGTTACTCTGGCTC
GGAAGAACAAAGGCGGGACATGCAATTTGGAGAAGGATAGAGTGCCCGAT
CCATGGAACCCGAACGATGGGGTCCGCCGGGATATCGGCCTATGTATCGC
GATCAAATCTGACGCGGGCATCCTTGATGAACACATTGCTTTTCACTGGG
CGCAAGGTGTAAGGAAGTTTATTATTTACGACGATGGCTCGAATGACAAT
CCATGGTCAGTTTTGGAGAAGTATGTGGCTCTTGGCATCGTTGAATACCA
CGACATGGCTGGTCATTGGCAAGCAAGCTCCTTCGCACTCCAGCTGAAAG
TACTGAACGAGTGCTTCACAACGTTTCGGGAGCGCGGGCCAGAGGATGGG
ATACGATGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGT
TCCCGGCGAGACCTTGTCCGACACACTCAACGCCAAGTACAAAGGAGAGG
CGTGCTTGCAAATCGCGCGGACATGGTATGGGTCGTCGTTTTACCATCAA
AAGCCTGTCGGTTTAGTCACCGAGACGTATATTCTTGCGTCTCCCGATCA
CGCCGATGGCATGCCTAAATTGATTGCGAACATTCACCCGGAGAACAGGA
CTAGGAACGCCACAGCACTTTTCTCGGTCCATGATTTTGTGAATCAAACC
GTGATTCCTTGTTTACTCAAGAAAGATGTTAAGGACGTGCGGATCAACCA
TTATTTGAGAAGTTTAGAGGAGTATGATAAAAAGGCTTTGGCTGTCAATA
CCCAGAAAGAGAAATACATGGACCCGTTGAAGAAGTTTTTTAAACGGGAC
TGGAATACGCATTTGAGTCTCGCTGCGTCGACTTATGCGTGCCAGGTCCA
TGCTCTATTGGTACAGGTGCAGGAAATGCAGGGTGCGGGGAAGATTCCAG
CGGTGGTAAGGCCAAAGGCATGGAACGAGACTCATACAAGGTAG
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Synonyms
Publications