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Properties
| Property Name | Value |
|---|
| TranscriptId | 580622 |
| Track | FilteredModels2 |
| ProteinId | 580536 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:467362..469701 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2487 ID=mRNA_2487|Name=jgi.p|Nanoce1779_2|580536|organism=Nannochloropsis oceanica|type=mRNA|length=2057bp
AACAGGTGCCTGGAGATGTTGGGATTCCACAGGCGTGTCTCCATCGCCTC
CGCTACCGTCCTTTTTATGTTGGTTTCAACAGGTTCATGTGCTGCCTCGG
CACTGCTCAAGCGGCAGCACACCGGCTTCCTACCGGGGGGGAGGGGAGGC
GTGTTGGTCGCCCGTACATTGCGGACTATCAGCAGCAGCAGCACACACAA
GCGAAACCTGATGAGCATGTCTTCCCAAGCGCCAACCAAGAAGGAGGCAG
CAGCAGCCCCTGCCAAGATGGCGGGAGGAGTGGGGTCGACATATAATATG
GAAGACATCGTGAATGTATGCAAGCGACGGGGGTTTGTCTTTCAGTCGTC
CGAAATTTACAATGGCTTTAATGGCTTCTATGACTACGGCCCTTTGGGCG
TCGAACTCAAAAATAACATCAAACAACGCTGGTGGCGTGACATGGTTCAC
TCTCGCGACGATGTAGTAGGCCTGGACTCCAGCATTATCTCCTCTCCACG
GGTATGGGAAGCCTCTGGTCATGTCTCGGGTTTCGTGGATCCTATGGTTG
ATTGCAAGGTTTCCAAGCTTCGTTATCGCGCCGACCAGCTTTTCTACGCC
AAAGTTGAGTTGAATGACGATGAAGGGGTGATCGGATACATTTCCCTTCT
GGACTGTGGGGATTTGCAAGGAGAGGCGACCAAACTGGCCGAAAAACTGA
AGAGGAAGGCTGGGAAGCAGGGCACGATCAAGCTGCCCCTCGATATAAAG
GACATGACCAAAGCCACCGAAGCCGAACTGGTGCTCATCCCCTCCCCCGC
GACTGGGGAAGCGGGTTCATTGACTCCTCCTCGATCGTTTAATTTGATGT
TCCAAACATCTGTGGGTGCCCTTTCAGACGGCTCTTCGACAGCGTACCTT
CGTCCGGAGACCGCTCAGGGTATTTTCACTAACTTTAAAAACGTCCAAAG
CACCGCAAGAGTGAAGGTTCCTTTCGGGATCGCCCAAATAGGCAAGGCCT
TTCGAAATGAAATCACCCCCCGAAATTTTATCTTTCGTTCCAGGGAGTTC
GAGCAGATGGAGATTGAATATTTCATTCCCCCGGAGGAGGAAGTGTGGGA
GGGTTTTTATGAAGGGTGGATCGAGACGGCGTGGGGGTGGTTGACCAGCA
TTGGGATGCGGGAGGACTTGATGGGTAAGGAGGTGCACCCGAAGGATGAT
TTGGCACATTATGCACGGGCATGCACCGATATTGTGTTTATGTTTCCTTT
TGGCCAGGTGGAATTGCAGGGTGTGGCGGCACGAGGCGATTATGATTTGA
CGCAGCATCAAACGAGCAGTGGGAAGAGCATGGAGTATTTCGATGAGGCG
GGAAAAAGGAAGTATTTGCCGCATGTAATTGAGCCGAGTATTGGGGTGGA
CCGATTATTCTTGGCGTTGATTTGCTCGGCGTATGCAGAGGATGAGGTTG
AGGGGGAGAAGCGGGTGGTAATGAAATTTCACCCGAGCATGGCGCCCATC
AAGGTGGGCATTTTTCCGTTGGTGAAAAATAAGCCGGAGATTATGGCAAA
GGCGCGGGGGATTCATGACCTATTGAAGAAACGGTACAATGTTTTCTGGG
ACGTGAGTGGGGCGATTGGACGGAGGTACAGGCGGATGGATGAAGCGGGC
ACCCCTTTTTGTATTACAGTTGATTTTGATACGTTGGAAGATAACACGGT
GACAGTTAGGGAGCGGGACAGCACAAAACAGACCCGAATGAACGTCGAAG
AGTTGCTCGGATTTTTGGATAGGGAGATCAATGGGTAGAGATTCGAGGGA
GGCAGGGAAGGGGTAAGGGAAGGAGGAGTTGGCATGTGTGACAAGTTAGG
TCACACATAGTTCAAGAAGAAAGAGGATTCTCAAGTGATTCATATATAGG
CAGCCCGTTGTCTTATTCTTATGTTGCCTGGGTAGCATCGCTTCGCTCGG
CGTCCTGTGAAGATATGCTCCCTGCCACTTGTCTCTTCTAGGATATATCC
AGCCAGAGGAAGACAAATAATCAAAAAGCATGCAAAAGAAGCAGAGCAAT
AGTTTTA back to topprotein sequence of jgi.p|Nanoce1779_2|580536 >mRNA_2487-protein ID=mRNA_2487-protein|Name=jgi.p|Nanoce1779_2|580536|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp
MLGFHRRVSIASATVLFMLVSTGSCAASALLKRQHTGFLPGGRGGVLVAR
TLRTISSSSTHKRNLMSMSSQAPTKKEAAAAPAKMAGGVGSTYNMEDIVN
VCKRRGFVFQSSEIYNGFNGFYDYGPLGVELKNNIKQRWWRDMVHSRDDV
VGLDSSIISSPRVWEASGHVSGFVDPMVDCKVSKLRYRADQLFYAKVELN
DDEGVIGYISLLDCGDLQGEATKLAEKLKRKAGKQGTIKLPLDIKDMTKA
TEAELVLIPSPATGEAGSLTPPRSFNLMFQTSVGALSDGSSTAYLRPETA
QGIFTNFKNVQSTARVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEI
EYFIPPEEEVWEGFYEGWIETAWGWLTSIGMREDLMGKEVHPKDDLAHYA
RACTDIVFMFPFGQVELQGVAARGDYDLTQHQTSSGKSMEYFDEAGKRKY
LPHVIEPSIGVDRLFLALICSAYAEDEVEGEKRVVMKFHPSMAPIKVGIF
PLVKNKPEIMAKARGIHDLLKKRYNVFWDVSGAIGRRYRRMDEAGTPFCI
TVDFDTLEDNTVTVRERDSTKQTRMNVEELLGFLDREING* back to topmRNA from alignment at scaffold_5:467362..469701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2487 ID=mRNA_2487|Name=jgi.p|Nanoce1779_2|580536|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at scaffold_5:467362..469701- (Nannochloropsis oceanica)
AACAGGTGCCTGGAGATGTTGGGATTCCACAGGCGTGTCTCCATCGCCTC
CGCTACCGTCCTTTTTATGTTGGTTTCAACAGGTAAGTCTCTGACCGAGA
GGCAAGGCAGGTCATGAGTCGGGCCAACAAAGCAACGTATGTGCTGTGGA
TACTCGGCGTTTGTGCTGCTTGTTTGCGCTGTGTATCACCACCTATGGCA
GTGGCAGTGTCGAAAAACAGTAACTAGGATCTGAACTCACATTCTATCAT
ATTCACCCAGGTTCATGTGCTGCCTCGGCACTGCTCAAGCGGCAGCACAC
CGGCTTCCTACCGGGGGGGAGGGGAGGCGTGTTGGTCGCCCGTACATTGC
GGACTATCAGCAGCAGCAGCACACACAAGCGAAACCTGATGAGCATGTCT
TCCCAAGCGCCAACCAAGAAGGAGGCAGCAGCAGCCCCTGCCAAGATGGC
GGGAGGAGTGGGGTCGACATATAATATGGAAGACATCGTGAATGTATGCA
AGCGACGGGGGTTTGTCTTTCAGTCGTCCGAAATTTACAATGGCTTTAAT
GGCTTCTATGACTACGGCCCTTTGGGCGGTACGTACAACCAATAGCTAGC
TTTCTTCTGCTGCCACCATTACCTCCCCCACCATACCATTCACATCACAT
CCCTGCCTCCCTCCTCTCCCCTGACCCCTGTAGTCGAACTCAAAAATAAC
ATCAAACAACGCTGGTGGCGTGACATGGTTCACTCTCGCGACGATGTAGT
AGGCCTGGACTCCAGCATTATCTCCTCTCCACGGGTATGGGAAGCCTCTG
GTCATGTCTCGGGTTTCGTGGATCCTATGGTTGATTGCAAGGTTTCCAAG
CTTCGTTATCGCGCCGACCAGCTTTTCTACGCCAAAGTTGAGTTGAATGA
CGATGAAGGGGTGATCGGATACATTTCCCTTCTGGACTGTGGGGATTTGC
AAGGAGAGGCGACCAAACTGGCCGAAAAACTGAAGAGGAAGGCTGGGAAG
CAGGGCACGATCAAGCTGCCCCTCGATATAAAGGACATGACCAAAGCCAC
CGAAGCCGAACTGGTGCTCATCCCCTCCCCCGCGACTGGGGAAGCGGGTT
CATTGACTCCTCCTCGATCGTTTAATTTGATGTTCCAAACATCTGTGGGT
GCCCTTTCAGACGGCTCTTCGACAGCGTACCTTCGTCCGGAGACCGCTCA
GGGTATTTTCACTAACTTTAAAAACGTCCAAAGCACCGCAAGAGTGAAGG
TTCCTTTCGGGATCGCCCAAATAGGCAAGGCCTTTCGAAATGAAATCACC
CCCCGAAATTTTATCTTTCGTTCCAGGGAGTTCGAGCAGATGGAGATTGA
ATATTTCATTCCCCCGGAGGAGGAAGTGTGGGAGGGTTTTTATGAAGGGT
GGATCGAGACGGCGTGGGGGTGGTTGACCAGCATTGGGATGCGGGAGGAC
TTGATGGGTAAGGAGGTGCACCCGAAGGATGATTTGGCACATTATGCACG
GGCATGCACCGATATTGTGTTTATGTTTCCTTTTGGCCAGGTGGAATTGC
AGGGTGTGGCGGCACGAGGCGATTATGATTTGACGCAGCATCAAACGAGC
AGTGGGAAGAGCATGGAGTATTTCGATGAGGCGGGAAAAAGGAAGTATTT
GCCGCATGTAATTGAGCCGAGTATTGGGGTGGACCGATTATTCTTGGCGT
TGATTTGCTCGGCGTATGCAGAGGATGAGGTTGAGGGGGAGAAGCGGGTG
GTAATGAAATTTCACCCGAGCATGGCGCCCATCAAGGTGGGCATTTTTCC
GTTGGTGAAAAATAAGCCGGAGATTATGGCAAAGGCGCGGGGGATTCATG
ACCTATTGAAGAAACGGTACAATGTTTTCTGGGACGTGAGTGGGGCGATT
GGACGGAGGTACAGGCGGATGGATGAAGCGGGCACCCCTTTTTGTATTAC
AGTTGATTTTGATACGTTGGAAGATAACACGGTGACAGTTAGGGAGCGGG
ACAGCACAAAACAGACCCGAATGAACGTCGAAGAGTTGCTCGGATTTTTG
GATAGGGAGATCAATGGGTAGAGATTCGAGGGAGGCAGGGAAGGGGTAAG
GGAAGGAGGAGTTGGCATGTGTGACAAGTTAGGTCACACATAGTTCAAGA
AGAAAGAGGATTCTCAAGTGATTCATATATAGGCAGCCCGTTGTCTTATT
CTTATGTTGCCTGGGTAGCATCGCTTCGCTCGGCGTCCTGTGAAGATATG
CTCCCTGCCACTTGTCTCTTCTAGGATATATCCAGCCAGAGGAAGACAAA
TAATCAAAAAGCATGCAAAAGAAGCAGAGCAATAGTTTTA back to topCoding sequence (CDS) from alignment at scaffold_5:467362..469701- >mRNA_2487 ID=mRNA_2487|Name=jgi.p|Nanoce1779_2|580536|organism=Nannochloropsis oceanica|type=CDS|length=5319bp|location=Sequence derived from alignment at scaffold_5:467362..469701- (Nannochloropsis oceanica)
TCGAACTCAAAAATAACATCAAACAACGCTGGTGGCGTGACATGGTTCAC
TCTCGCGACGATGTAGTAGGCCTGGACTCCAGCATTATCTCCTCTCCACG
GGTATGGGAAGCCTCTGGTCATGTCTCGGGTTTCGTGGATCCTATGGTTG
ATTGCAAGGTTTCCAAGCTTCGTTATCGCGCCGACCAGCTTTTCTACGCC
AAAGTTGAGTTGAATGACGATGAAGGGGTGATCGGATACATTTCCCTTCT
GGACTGTGGGGATTTGCAAGGAGAGGCGACCAAACTGGCCGAAAAACTGA
AGAGGAAGGCTGGGAAGCAGGGCACGATCAAGCTGCCCCTCGATATAAAG
GACATGACCAAAGCCACCGAAGCCGAACTGGTGCTCATCCCCTCCCCCGC
GACTGGGGAAGCGGGTTCATTGACTCCTCCTCGATCGTTTAATTTGATGT
TCCAAACATCTGTGGGTGCCCTTTCAGACGGCTCTTCGACAGCGTACCTT
CGTCCGGAGACCGCTCAGGGTATTTTCACTAACTTTAAAAACGTCCAAAG
CACCGCAAGAGTGAAGGTTCCTTTCGGGATCGCCCAAATAGGCAAGGCCT
TTCGAAATGAAATCACCCCCCGAAATTTTATCTTTCGTTCCAGGGAGTTC
GAGCAGATGGAGATTGAATATTTCATTCCCCCGGAGGAGGAAGTGTGGGA
GGGTTTTTATGAAGGGTGGATCGAGACGGCGTGGGGGTGGTTGACCAGCA
TTGGGATGCGGGAGGACTTGATGGGTAAGGAGGTGCACCCGAAGGATGAT
TTGGCACATTATGCACGGGCATGCACCGATATTGTGTTTATGTTTCCTTT
TGGCCAGGTGGAATTGCAGGGTGTGGCGGCACGAGGCGATTATGATTTGA
CGCAGCATCAAACGAGCAGTGGGAAGAGCATGGAGTATTTCGATGAGGCG
GGAAAAAGGAAGTATTTGCCGCATGTAATTGAGCCGAGTATTGGGGTGGA
CCGATTATTCTTGGCGTTGATTTGCTCGGCGTATGCAGAGGATGAGGTTG
AGGGGGAGAAGCGGGTGGTAATGAAATTTCACCCGAGCATGGCGCCCATC
AAGGTGGGCATTTTTCCGTTGGTGAAAAATAAGCCGGAGATTATGGCAAA
GGCGCGGGGGATTCATGACCTATTGAAGAAACGGTACAATGTTTTCTGGG
ACGTGAGTGGGGCGATTGGACGGAGGTACAGGCGGATGGATGAAGCGGGC
ACCCCTTTTTGTATTACAGTTGATTTTGATACGTTGGAAGATAACACGGT
GACAGTTAGGGAGCGGGACAGCACAAAACAGACCCGAATGAACGTCGAAG
AGTTGCTCGGATTTTTGGATAGGGAGATCAATGGGTAGGTTCATGTGCTG
CCTCGGCACTGCTCAAGCGGCAGCACACCGGCTTCCTACCGGGGGGGAGG
GGAGGCGTGTTGGTCGCCCGTACATTGCGGACTATCAGCAGCAGCAGCAC
ACACAAGCGAAACCTGATGAGCATGTCTTCCCAAGCGCCAACCAAGAAGG
AGGCAGCAGCAGCCCCTGCCAAGATGGCGGGAGGAGTGGGGTCGACATAT
AATATGGAAGACATCGTGAATGTATGCAAGCGACGGGGGTTTGTCTTTCA
GTCGTCCGAAATTTACAATGGCTTTAATGGCTTCTATGACTACGGCCCTT
TGGGCGATGTTGGGATTCCACAGGCGTGTCTCCATCGCCTCCGCTACCGT
CCTTTTTATGTTGGTTTCAACAGTCGAACTCAAAAATAACATCAAACAAC
GCTGGTGGCGTGACATGGTTCACTCTCGCGACGATGTAGTAGGCCTGGAC
TCCAGCATTATCTCCTCTCCACGGGTATGGGAAGCCTCTGGTCATGTCTC
GGGTTTCGTGGATCCTATGGTTGATTGCAAGGTTTCCAAGCTTCGTTATC
GCGCCGACCAGCTTTTCTACGCCAAAGTTGAGTTGAATGACGATGAAGGG
GTGATCGGATACATTTCCCTTCTGGACTGTGGGGATTTGCAAGGAGAGGC
GACCAAACTGGCCGAAAAACTGAAGAGGAAGGCTGGGAAGCAGGGCACGA
TCAAGCTGCCCCTCGATATAAAGGACATGACCAAAGCCACCGAAGCCGAA
CTGGTGCTCATCCCCTCCCCCGCGACTGGGGAAGCGGGTTCATTGACTCC
TCCTCGATCGTTTAATTTGATGTTCCAAACATCTGTGGGTGCCCTTTCAG
ACGGCTCTTCGACAGCGTACCTTCGTCCGGAGACCGCTCAGGGTATTTTC
ACTAACTTTAAAAACGTCCAAAGCACCGCAAGAGTGAAGGTTCCTTTCGG
GATCGCCCAAATAGGCAAGGCCTTTCGAAATGAAATCACCCCCCGAAATT
TTATCTTTCGTTCCAGGGAGTTCGAGCAGATGGAGATTGAATATTTCATT
CCCCCGGAGGAGGAAGTGTGGGAGGGTTTTTATGAAGGGTGGATCGAGAC
GGCGTGGGGGTGGTTGACCAGCATTGGGATGCGGGAGGACTTGATGGGTA
AGGAGGTGCACCCGAAGGATGATTTGGCACATTATGCACGGGCATGCACC
GATATTGTGTTTATGTTTCCTTTTGGCCAGGTGGAATTGCAGGGTGTGGC
GGCACGAGGCGATTATGATTTGACGCAGCATCAAACGAGCAGTGGGAAGA
GCATGGAGTATTTCGATGAGGCGGGAAAAAGGAAGTATTTGCCGCATGTA
ATTGAGCCGAGTATTGGGGTGGACCGATTATTCTTGGCGTTGATTTGCTC
GGCGTATGCAGAGGATGAGGTTGAGGGGGAGAAGCGGGTGGTAATGAAAT
TTCACCCGAGCATGGCGCCCATCAAGGTGGGCATTTTTCCGTTGGTGAAA
AATAAGCCGGAGATTATGGCAAAGGCGCGGGGGATTCATGACCTATTGAA
GAAACGGTACAATGTTTTCTGGGACGTGAGTGGGGCGATTGGACGGAGGT
ACAGGCGGATGGATGAAGCGGGCACCCCTTTTTGTATTACAGTTGATTTT
GATACGTTGGAAGATAACACGGTGACAGTTAGGGAGCGGGACAGCACAAA
ACAGACCCGAATGAACGTCGAAGAGTTGCTCGGATTTTTGGATAGGGAGA
TCAATGGGTAGGTTCATGTGCTGCCTCGGCACTGCTCAAGCGGCAGCACA
CCGGCTTCCTACCGGGGGGGAGGGGAGGCGTGTTGGTCGCCCGTACATTG
CGGACTATCAGCAGCAGCAGCACACACAAGCGAAACCTGATGAGCATGTC
TTCCCAAGCGCCAACCAAGAAGGAGGCAGCAGCAGCCCCTGCCAAGATGG
CGGGAGGAGTGGGGTCGACATATAATATGGAAGACATCGTGAATGTATGC
AAGCGACGGGGGTTTGTCTTTCAGTCGTCCGAAATTTACAATGGCTTTAA
TGGCTTCTATGACTACGGCCCTTTGGGCGATGTTGGGATTCCACAGGCGT
GTCTCCATCGCCTCCGCTACCGTCCTTTTTATGTTGGTTTCAACAGTCGA
ACTCAAAAATAACATCAAACAACGCTGGTGGCGTGACATGGTTCACTCTC
GCGACGATGTAGTAGGCCTGGACTCCAGCATTATCTCCTCTCCACGGGTA
TGGGAAGCCTCTGGTCATGTCTCGGGTTTCGTGGATCCTATGGTTGATTG
CAAGGTTTCCAAGCTTCGTTATCGCGCCGACCAGCTTTTCTACGCCAAAG
TTGAGTTGAATGACGATGAAGGGGTGATCGGATACATTTCCCTTCTGGAC
TGTGGGGATTTGCAAGGAGAGGCGACCAAACTGGCCGAAAAACTGAAGAG
GAAGGCTGGGAAGCAGGGCACGATCAAGCTGCCCCTCGATATAAAGGACA
TGACCAAAGCCACCGAAGCCGAACTGGTGCTCATCCCCTCCCCCGCGACT
GGGGAAGCGGGTTCATTGACTCCTCCTCGATCGTTTAATTTGATGTTCCA
AACATCTGTGGGTGCCCTTTCAGACGGCTCTTCGACAGCGTACCTTCGTC
CGGAGACCGCTCAGGGTATTTTCACTAACTTTAAAAACGTCCAAAGCACC
GCAAGAGTGAAGGTTCCTTTCGGGATCGCCCAAATAGGCAAGGCCTTTCG
AAATGAAATCACCCCCCGAAATTTTATCTTTCGTTCCAGGGAGTTCGAGC
AGATGGAGATTGAATATTTCATTCCCCCGGAGGAGGAAGTGTGGGAGGGT
TTTTATGAAGGGTGGATCGAGACGGCGTGGGGGTGGTTGACCAGCATTGG
GATGCGGGAGGACTTGATGGGTAAGGAGGTGCACCCGAAGGATGATTTGG
CACATTATGCACGGGCATGCACCGATATTGTGTTTATGTTTCCTTTTGGC
CAGGTGGAATTGCAGGGTGTGGCGGCACGAGGCGATTATGATTTGACGCA
GCATCAAACGAGCAGTGGGAAGAGCATGGAGTATTTCGATGAGGCGGGAA
AAAGGAAGTATTTGCCGCATGTAATTGAGCCGAGTATTGGGGTGGACCGA
TTATTCTTGGCGTTGATTTGCTCGGCGTATGCAGAGGATGAGGTTGAGGG
GGAGAAGCGGGTGGTAATGAAATTTCACCCGAGCATGGCGCCCATCAAGG
TGGGCATTTTTCCGTTGGTGAAAAATAAGCCGGAGATTATGGCAAAGGCG
CGGGGGATTCATGACCTATTGAAGAAACGGTACAATGTTTTCTGGGACGT
GAGTGGGGCGATTGGACGGAGGTACAGGCGGATGGATGAAGCGGGCACCC
CTTTTTGTATTACAGTTGATTTTGATACGTTGGAAGATAACACGGTGACA
GTTAGGGAGCGGGACAGCACAAAACAGACCCGAATGAACGTCGAAGAGTT
GCTCGGATTTTTGGATAGGGAGATCAATGGGTAGGTTCATGTGCTGCCTC
GGCACTGCTCAAGCGGCAGCACACCGGCTTCCTACCGGGGGGGAGGGGAG
GCGTGTTGGTCGCCCGTACATTGCGGACTATCAGCAGCAGCAGCACACAC
AAGCGAAACCTGATGAGCATGTCTTCCCAAGCGCCAACCAAGAAGGAGGC
AGCAGCAGCCCCTGCCAAGATGGCGGGAGGAGTGGGGTCGACATATAATA
TGGAAGACATCGTGAATGTATGCAAGCGACGGGGGTTTGTCTTTCAGTCG
TCCGAAATTTACAATGGCTTTAATGGCTTCTATGACTACGGCCCTTTGGG
CGATGTTGGGATTCCACAGGCGTGTCTCCATCGCCTCCGCTACCGTCCTT
TTTATGTTGGTTTCAACAG back to top
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