jgi.p|Nanoce1779_2|610135, mRNA_10193 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610135
Unique NamemRNA_10193
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1247
Alignment locationscaffold_48:115482..116728 +

Link to JBrowse

Properties
Property NameValue
TranscriptId610221
TrackFilteredModels2
ProteinId610135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:115482..116728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610135gene_10193Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610135mRNA_10193-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10193CDS_10193Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10193 ID=mRNA_10193|Name=jgi.p|Nanoce1779_2|610135|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
CCCTCCCTCCCTCCTCCTCTTCCTCCGTCATCGTCGTCCGAAAGGCCTTG
ATCGATCCCATCAAAGAGGAAGGGGAGGTGCGTGGCGAAGAGGAGGAGGG
GGAAGAAGAGACGTGGAGGGGATGACTCAAAACACGAGCAGCAGTAGGAC
TCGGGACCCGGCCCGAGGCAGAGAAGCCTTTAATGTCGCCGACGGTTGGA
GATAAGGTACGCCGCTGTTGCTGTTGCTGCTGCTCCTGATAAAAGGTGGG
GGAGGTAGCAAAGCTCTCGGGAGAGGCCGAATGGAAGATGGGGGGGGAGC
TCAAGGGGGAGGAAGAGGAGGAGGATGCAATGAAGGAAGCAGGCCGACGC
CCAACCAATTTCTTGGCTTCCGCCATCCCTCCTTCCATCTCTCTCCCTCC
TGCACTACCCGGAAGAGGAGGGAGATACCGACCGCTGGGGCTGCGTCTAG
CCGAGTCACGGTCAGAGGAAGAAGGAGAGGGAAAGAAGGGGGAGGAGATG
ACGTCGCTTTTATGTCGGTTGTGGTGCTTGCTGAAGGAAGGAGAAGGAAG
GAAGGAAGGGGGAGAATGCCCGCTCCGGTGGCGGCCATGGCCGGGGCCCT
CCTCTGGTAGCTTGTTGTGGCTGTTGCTGATGCTGTTGCTGCTGCCATCG
AGGGAGAGGGCGAGAAGCTCAGGAATGAAGCTGTCGGAGATGGAGGAAGA
TCCCTTGTGGTGCTGGCTACTGCTGCTGCTGATGTTGGTGCGTGACTGGG
TGCGCGAGCGAGAAGGAGGCGAGAACACGGTGAAGGCCGAGGAAGAGGGC
GGGGAGGAGGGGTTGGAGGAGGGGGCAACCGAGGAAGGACGACGATGGTG
GTGGTGGGAGGCCTGGACGGGGGATGTGACCCTAACTGAGGTGGGGGAGA
GAGGATCAACATCAAGAGAGAGACGAGATGTGATAGAGAGGGGCAAGGGT
GGGGAGAGGGGCAGGCGGTTAGTGCTTCCTTGAAGTAATCCATCGCCCGA
CGAAAATTGGGCAGTGTCTCTGAGAGCTAGAGGATTCTCCTCATTTCTGT
TGCCGGGCGCGCCAGTGTGGAGCAGTGTAGGGATGGAATTCCGGGTGGGC
CGCCGTTGACGCGGCAGTTGCTGTTGCTGCTGCTGTTGCTGCATCGGTGG
CGAGGAAAACGAAGAAGGGGAGGATAATCCGCCGGTAGGAGAGGTGATCG
ATGGGAGGCGCGTACGTTTCTCTCGCTGCTGCTGCTGCTGCTGCTGC
back to top

protein sequence of jgi.p|Nanoce1779_2|610135

>mRNA_10193-protein ID=mRNA_10193-protein|Name=jgi.p|Nanoce1779_2|610135|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MGGELKGEEEEEDAMKEAGRRPTNFLASAIPPSISLPPALPGRGGRYRPL
GLRLAESRSEEEGEGKKGEEMTSLLCRLWCLLKEGEGRKEGGECPLRWRP
WPGPSSGSLLWLLLMLLLLPSRERARSSGMKLSEMEEDPLWCWLLLLLML
VRDWVREREGGENTVKAEEEGGEEGLEEGATEEGRRWWWWEAWTGDVTLT
EVGERGSTSRERRDVIERGKGGERGRRLVLP*
back to top

mRNA from alignment at scaffold_48:115482..116728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10193 ID=mRNA_10193|Name=jgi.p|Nanoce1779_2|610135|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at scaffold_48:115482..116728+ (Nannochloropsis oceanica)
CCCTCCCTCCCTCCTCCTCTTCCTCCGTCATCGTCGTCCGAAAGGCCTTG
ATCGATCCCATCAAAGAGGAAGGGGAGGTGCGTGGCGAAGAGGAGGAGGG
GGAAGAAGAGACGTGGAGGGGATGACTCAAAACACGAGCAGCAGTAGGAC
TCGGGACCCGGCCCGAGGCAGAGAAGCCTTTAATGTCGCCGACGGTTGGA
GATAAGGTACGCCGCTGTTGCTGTTGCTGCTGCTCCTGATAAAAGGTGGG
GGAGGTAGCAAAGCTCTCGGGAGAGGCCGAATGGAAGATGGGGGGGGAGC
TCAAGGGGGAGGAAGAGGAGGAGGATGCAATGAAGGAAGCAGGCCGACGC
CCAACCAATTTCTTGGCTTCCGCCATCCCTCCTTCCATCTCTCTCCCTCC
TGCACTACCCGGAAGAGGAGGGAGATACCGACCGCTGGGGCTGCGTCTAG
CCGAGTCACGGTCAGAGGAAGAAGGAGAGGGAAAGAAGGGGGAGGAGATG
ACGTCGCTTTTATGTCGGTTGTGGTGCTTGCTGAAGGAAGGAGAAGGAAG
GAAGGAAGGGGGAGAATGCCCGCTCCGGTGGCGGCCATGGCCGGGGCCCT
CCTCTGGTAGCTTGTTGTGGCTGTTGCTGATGCTGTTGCTGCTGCCATCG
AGGGAGAGGGCGAGAAGCTCAGGAATGAAGCTGTCGGAGATGGAGGAAGA
TCCCTTGTGGTGCTGGCTACTGCTGCTGCTGATGTTGGTGCGTGACTGGG
TGCGCGAGCGAGAAGGAGGCGAGAACACGGTGAAGGCCGAGGAAGAGGGC
GGGGAGGAGGGGTTGGAGGAGGGGGCAACCGAGGAAGGACGACGATGGTG
GTGGTGGGAGGCCTGGACGGGGGATGTGACCCTAACTGAGGTGGGGGAGA
GAGGATCAACATCAAGAGAGAGACGAGATGTGATAGAGAGGGGCAAGGGT
GGGGAGAGGGGCAGGCGGTTAGTGCTTCCTTGAAGTAATCCATCGCCCGA
CGAAAATTGGGCAGTGTCTCTGAGAGCTAGAGGATTCTCCTCATTTCTGT
TGCCGGGCGCGCCAGTGTGGAGCAGTGTAGGGATGGAATTCCGGGTGGGC
CGCCGTTGACGCGGCAGTTGCTGTTGCTGCTGCTGTTGCTGCATCGGTGG
CGAGGAAAACGAAGAAGGGGAGGATAATCCGCCGGTAGGAGAGGTGATCG
ATGGGAGGCGCGTACGTTTCTCTCGCTGCTGCTGCTGCTGCTGCTGC
back to top

Coding sequence (CDS) from alignment at scaffold_48:115482..116728+

>mRNA_10193 ID=mRNA_10193|Name=jgi.p|Nanoce1779_2|610135|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_48:115482..116728+ (Nannochloropsis oceanica)
ATGGGGGGGGAGCTCAAGGGGGAGGAAGAGGAGGAGGATGCAATGAAGGA
AGCAGGCCGACGCCCAACCAATTTCTTGGCTTCCGCCATCCCTCCTTCCA
TCTCTCTCCCTCCTGCACTACCCGGAAGAGGAGGGAGATACCGACCGCTG
GGGCTGCGTCTAGCCGAGTCACGGTCAGAGGAAGAAGGAGAGGGAAAGAA
GGGGGAGGAGATGACGTCGCTTTTATGTCGGTTGTGGTGCTTGCTGAAGG
AAGGAGAAGGAAGGAAGGAAGGGGGAGAATGCCCGCTCCGGTGGCGGCCA
TGGCCGGGGCCCTCCTCTGGTAGCTTGTTGTGGCTGTTGCTGATGCTGTT
GCTGCTGCCATCGAGGGAGAGGGCGAGAAGCTCAGGAATGAAGCTGTCGG
AGATGGAGGAAGATCCCTTGTGGTGCTGGCTACTGCTGCTGCTGATGTTG
GTGCGTGACTGGGTGCGCGAGCGAGAAGGAGGCGAGAACACGGTGAAGGC
CGAGGAAGAGGGCGGGGAGGAGGGGTTGGAGGAGGGGGCAACCGAGGAAG
GACGACGATGGTGGTGGTGGGAGGCCTGGACGGGGGATGTGACCCTAACT
GAGGTGGGGGAGAGAGGATCAACATCAAGAGAGAGACGAGATGTGATAGA
GAGGGGCAAGGGTGGGGAGAGGGGCAGGCGGTTAGTGCTTCCTTGA
back to top
Synonyms
Publications