jgi.p|Nanoce1779_2|339058, mRNA_2772 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|339058
Unique Name	mRNA_2772
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1076
Alignment location	scaffold_5:1152066..1154336 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	339144
Track	FilteredModels2
ProteinId	339058

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1152066..1154336 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|339058	gene_2772	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|339058	mRNA_2772-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2772	CDS_2772	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1152066..1154336+
coding sequence from alignment at scaffold_5:1152066..1154336+

mRNA sequence

>mRNA_2772 ID=mRNA_2772|Name=jgi.p|Nanoce1779_2|339058|organism=Nannochloropsis oceanica|type=mRNA|length=1076bp
AACTCACACATCACCGCAAGGCGCACGTAACCCGAACAAGTCATGCCAGC
CATTCCGAGTTCATCATCTGCGATGGTGTCAGAGGTCAGCAGCAGCAACA
GCAGCAGCAAACTCACCATGGCAAAAGGTAACGAATGCCTCGCAAGCATT
AAGAGCAAGGAGGCGGCTTTCTACGGCGTGGATTCGGAGGACTTCACCGA
TCGAGTGGCGAGCATCATGACCGACTACGTGGAAGGGGCCATGCAAGATG
TGAAGCGGGATTTCTGCCGGACCCTGGCCGCGGCAGGGGGAGGGGGGGGA
AAGGGGAAGAAGGGCATGGGAAAGGAGGAGAACCCGGAAGCGTTTTACGA
GGAGACGGTGGCGCCGCGTGCGCGCTCCCTCGTGGACCGTCTGACCAAGC
GTGTGGACCGCCGGGCAGACGCTTTTGAGATTTATTTGGCCCGGAACATC
TTCAAGGTGCCCGAGACAAAGCCGATGCGGAAGGAGGATGCCATGGATGT
GGTTGACCAGCAGGTCGGGGAGGAGGAGGAGGAGGAGGAAGACCTGACTC
CTCCCCCCTCGTCGGAGCTACCCTCACCACAAGCTGAGGACGAAATGGAT
GAAGCCCTCACGGAAATGCGAGTCAAGATCCGCACGCTCCGGAGACAGCG
CAAGGCCATGGAAGCTCTCCTGACGAAAGCCACCGTCGACCTCGACTTGA
CCCAAGAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGACGTTGAACATG
GACCCAAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCCTTGACAGGGCA
GGGAGGGCAGCTTAACGAGCTCGTAGATGACGCAGATGGTAAGTGCAGGG
GGAGGGAAGAAGGGAGGGAGAGGGGGAGGGAGGGAGGGACGGATGGACGG
ACAGAGGGCAGATGAACGAGGGGAAAAGAAGCGCCTTTTTCATTTATGCC
TTGATGTTATTCGTGGACTGTCTTCGCTGAGATACACGCACGCCCTCTTC
CTCTCCCTTAATCCCTCTAGCCTTGCTGCCTGCACTGGAGCGTCGCCGGT
GCCAGGACGCAGGGGAGGAGGAGGTC

protein sequence of jgi.p|Nanoce1779_2|339058

>mRNA_2772-protein ID=mRNA_2772-protein|Name=jgi.p|Nanoce1779_2|339058|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MPAIPSSSSAMVSEVSSSNSSSKLTMAKGNECLASIKSKEAAFYGVDSED
FTDRVASIMTDYVEGAMQDVKRDFCRTLAAAGGGGGKGKKGMGKEENPEA
FYEETVAPRARSLVDRLTKRVDRRADAFEIYLARNIFKVPETKPMRKEDA
MDVVDQQVGEEEEEEEDLTPPPSSELPSPQAEDEMDEALTEMRVKIRTLR
RQRKAMEALLTKATVDLDLTQEAYALRLQFLQTLNMDPKLGPLSEALEAL
TGQGGQLNELVDDADGKCRGREEGRERGREGGTDGRTEGR*

mRNA from alignment at scaffold_5:1152066..1154336+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2772 ID=mRNA_2772|Name=jgi.p|Nanoce1779_2|339058|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at scaffold_5:1152066..1154336+ (Nannochloropsis oceanica)
AACTCACACATCACCGCAAGGCGCACGTAACCCGAACAAGTCATGCCAGC
CATTCCGAGTTCATCATCTGCGATGGTGTCAGAGGTCAGCAGCAGCAACA
GCAGCAGCAAACTCACCATGGCAAAAGGTAACGAATGCCTCGCAAGCATT
AAGAGCAAGGAGGCGGCTTTCTACGGCGTGGATTCGGAGGACTTCACCGA
TCGAGGTACGAATAGGGAGCGGGAGTGAAGAGGAGAGAGAAAAGGGAAGG
TAGGAGGGAGGAAGGGTTGGTGTCGGGGTCCTTGTAGCACTTGGCGTGGT
GGGACTCAGAGGGCCAGTGTAGTAGGTGATGACGGGGGGATGAAGTCTGA
GGGATAAAGAGGAGGAGCCGGAGGCAATCGTGGTATATCAACAAACGGGC
AGAGACATTGTGGTGGAAAGTTCTCCTATTAGCGCCCACAATAGCGTGCT
ATCTGCGTCCTTCCTTCCTTTCAAACCCAGAAGTCTGGAACGTTTCACTC
TCACCCCTCCCTCCCCTCCTCCCATCCCTCCGTTCCTCCCTCAATTGCGC
CAGTGGCGAGCATCATGACCGACTACGTGGAAGGGGCCATGCAAGATGTG
AAGCGGGATTTCTGCCGGACCCTGGCCGCGGCAGGGGGAGGGGGGGGAAA
GGGGAAGAAGGGCATGGGAAAGGAGGAGAACCCGGAAGCGTTTTACGAGG
AGACGGTGGCGCCGGTAGGAATGGGGGAGGGAGGGAAGGATAGAGGGAAG
GGAAGGAGGAATAACAGGGCAACGACAGAAATCGATTCGTGGGTATTGCT
GTAATGCAATCATCGCTTTGATACCCCGTCACTGAATTTCGTTCCCTCCC
TCCCTCCCTCCCTCATTCCCTCCCTCCTTCCTTTCGACCAGCGTGCGCGC
TCCCTCGTGGACCGTCTGACCAAGCGTGTGGACCGCCGGGCAGACGCTTT
TGAGATTTATTTGGCCCGGAACATCTTCAAGGTGCCCGAGACAAAGCCGA
TGCGGAAGGAGGTAGGGAGGGAGGGAGGGCGGGAGGGTCGAGGGAGTGAA
GAAGACACGGTTCGGTCATCATTCCACGAAAAGGTGCTTTTTCCCTCTGC
TGGACGCTCAGTAATCACTTTTCCTTCCCTTCCTCCCCCCTTGCCTCGCC
CTTGCCCCGTCGTCAGGATGCCATGGATGTGGTTGACCAGCAGGTCGGGG
AGGAGGAGGAGGAGGAGGAAGACCTGACTCCTCCCCCCTCGTCGGAGCTA
CCCTCACCACAAGCTGAGGACGAAATGGATGAAGCCCTCACGGAAATGCG
AGTCAAGATCCGCACGGTATGTCCCTCCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTTC
CTCCCCCCCTCTCTTCCTCCCTCCCTCCCTCACTCACTCACTCATTCACT
CACTCTCACACACACTCCTTCCCCCCCCTGTGTTTCCATTGACTTGCCAT
TTATTCCTTTCCCTCCGTTCCGCCCTCCCTCCCATTGACTCGCCCTTTAT
TCTTCTCCCTCTCTCCCGCCCTCCCTCCCTCCCTCTCTCCCTCTCTCCAG
CTCCGGAGACAGCGCAAGGCCATGGAAGCTCTCCTGACGAAAGCCACCGT
CGACCTCGACTTGACCCAAGTACAGAGGGAGGAAGAGAGGAGGGAGGGAG
GGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACATACCGTGCG
GATCTTGACCCAAGTATGACCCCAAGTACAGAGGGAGGGAGAGAGGGATG
GAGGGAGGGAGAGAGAGTTGGAGAACGGCAGCTTTTCCTGCATGCACGCG
TCTTACGTGGTTGATAACCCCTCCCTCCCTCCCTCCCTCCCTCACAGAAG
GAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGACGTTGAACATGGACCC
AAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCCTTGACAGGGCAGGGAG
GGCAGCTTAACGAGCTCGTAGATGACGCAGATGGTAAGTGCAGGGGGAGG
GAAGAAGGGAGGGAGAGGGGGAGGGAGGGAGGGACGGATGGACGGACAGA
GGGCAGATGAACGAGGGGAAAAGAAGCGCCTTTTTCATTTATGCCTTGAT
GTTATTCGTGGACTGTCTTCGCTGAGATACACGCACGCCCTCTTCCTCTC
CCTTAATCCCTCTAGCCTTGCTGCCTGCACTGGAGCGTCGCCGGTGCCAG
GACGCAGGGGAGGAGGAGGTC

Coding sequence (CDS) from alignment at scaffold_5:1152066..1154336+

>mRNA_2772 ID=mRNA_2772|Name=jgi.p|Nanoce1779_2|339058|organism=Nannochloropsis oceanica|type=CDS|length=5238bp|location=Sequence derived from alignment at scaffold_5:1152066..1154336+ (Nannochloropsis oceanica)
ATGCCAGCCATTCCGAGTTCATCATCTGCGATGGTGTCAGAGGTCAGCAG
CAGCAACAGCAGCAGCAAACTCACCATGGCAAAAGGTAACGAATGCCTCG
CAAGCATTAAGAGCAAGGAGGCGGCTTTCTACGGCGTGGATTCGGAGGAC
TTCACCGATCGAGTGGCGAGCATCATGACCGACTACGTGGAAGGGGCCAT
GCAAGATGTGAAGCGGGATTTCTGCCGGACCCTGGCCGCGGCAGGGGGAG
GGGGGGGAAAGGGGAAGAAGGGCATGGGAAAGGAGGAGAACCCGGAAGCG
TTTTACGAGGAGACGGTGGCGCCGCGTGCGCGCTCCCTCGTGGACCGTCT
GACCAAGCGTGTGGACCGCCGGGCAGACGCTTTTGAGATTTATTTGGCCC
GGAACATCTTCAAGGTGCCCGAGACAAAGCCGATGCGGAAGGAGGATGCC
ATGGATGTGGTTGACCAGCAGGTCGGGGAGGAGGAGGAGGAGGAGGAAGA
CCTGACTCCTCCCCCCTCGTCGGAGCTACCCTCACCACAAGCTGAGGACG
AAATGGATGAAGCCCTCACGGAAATGCGAGTCAAGATCCGCACGCTCCGG
AGACAGCGCAAGGCCATGGAAGCTCTCCTGACGAAAGCCACCGTCGACCT
CGACTTGACCCAAGAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGACGT
TGAACATGGACCCAAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCCTTG
ACAGGGCAGGGAGGGCAGCTTAACGAGCTCGTAGATGACGCAGATGGTAA
GTGCAGGGGGAGGGAAGAAGGGAGGGAGAGGGGGAGGGAGGGAGGGACGG
ATGGACGGACAGAGGGCAGATGAATGCCAGCCATTCCGAGTTCATCATCT
GCGATGGTGTCAGAGGTCAGCAGCAGCAACAGCAGCAGCAAACTCACCAT
GGCAAAAGGTAACGAATGCCTCGCAAGCATTAAGAGCAAGGAGGCGGCTT
TCTACGGCGTGGATTCGGAGGACTTCACCGATCGAGTGGCGAGCATCATG
ACCGACTACGTGGAAGGGGCCATGCAAGATGTGAAGCGGGATTTCTGCCG
GACCCTGGCCGCGGCAGGGGGAGGGGGGGGAAAGGGGAAGAAGGGCATGG
GAAAGGAGGAGAACCCGGAAGCGTTTTACGAGGAGACGGTGGCGCCGCGT
GCGCGCTCCCTCGTGGACCGTCTGACCAAGCGTGTGGACCGCCGGGCAGA
CGCTTTTGAGATTTATTTGGCCCGGAACATCTTCAAGGTGCCCGAGACAA
AGCCGATGCGGAAGGAGGATGCCATGGATGTGGTTGACCAGCAGGTCGGG
GAGGAGGAGGAGGAGGAGGAAGACCTGACTCCTCCCCCCTCGTCGGAGCT
ACCCTCACCACAAGCTGAGGACGAAATGGATGAAGCCCTCACGGAAATGC
GAGTCAAGATCCGCACGCTCCGGAGACAGCGCAAGGCCATGGAAGCTCTC
CTGACGAAAGCCACCGTCGACCTCGACTTGACCCAAGAAGCATACGCGCT
CCGCCTGCAGTTTCTGCAGACGTTGAACATGGACCCAAAGCTCGGGCCCC
TCAGTGAGGCACTAGAGGCCTTGACAGGGCAGGGAGGGCAGCTTAACGAG
CTCGTAGATGACGCAGATGGTAAGTGCAGGGGGAGGGAAGAAGGGAGGGA
GAGGGGGAGGGAGGGAGGGACGGATGGACGGACAGAGGGCAGATGAATGC
CAGCCATTCCGAGTTCATCATCTGCGATGGTGTCAGAGGTCAGCAGCAGC
AACAGCAGCAGCAAACTCACCATGGCAAAAGGTAACGAATGCCTCGCAAG
CATTAAGAGCAAGGAGGCGGCTTTCTACGGCGTGGATTCGGAGGACTTCA
CCGATCGAGTGGCGAGCATCATGACCGACTACGTGGAAGGGGCCATGCAA
GATGTGAAGCGGGATTTCTGCCGGACCCTGGCCGCGGCAGGGGGAGGGGG
GGGAAAGGGGAAGAAGGGCATGGGAAAGGAGGAGAACCCGGAAGCGTTTT
ACGAGGAGACGGTGGCGCCGCGTGCGCGCTCCCTCGTGGACCGTCTGACC
AAGCGTGTGGACCGCCGGGCAGACGCTTTTGAGATTTATTTGGCCCGGAA
CATCTTCAAGGTGCCCGAGACAAAGCCGATGCGGAAGGAGGATGCCATGG
ATGTGGTTGACCAGCAGGTCGGGGAGGAGGAGGAGGAGGAGGAAGACCTG
ACTCCTCCCCCCTCGTCGGAGCTACCCTCACCACAAGCTGAGGACGAAAT
GGATGAAGCCCTCACGGAAATGCGAGTCAAGATCCGCACGCTCCGGAGAC
AGCGCAAGGCCATGGAAGCTCTCCTGACGAAAGCCACCGTCGACCTCGAC
TTGACCCAAGAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGACGTTGAA
CATGGACCCAAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCCTTGACAG
GGCAGGGAGGGCAGCTTAACGAGCTCGTAGATGACGCAGATGGTAAGTGC
AGGGGGAGGGAAGAAGGGAGGGAGAGGGGGAGGGAGGGAGGGACGGATGG
ACGGACAGAGGGCAGATGAATGCCAGCCATTCCGAGTTCATCATCTGCGA
TGGTGTCAGAGGTCAGCAGCAGCAACAGCAGCAGCAAACTCACCATGGCA
AAAGGTAACGAATGCCTCGCAAGCATTAAGAGCAAGGAGGCGGCTTTCTA
CGGCGTGGATTCGGAGGACTTCACCGATCGAGTGGCGAGCATCATGACCG
ACTACGTGGAAGGGGCCATGCAAGATGTGAAGCGGGATTTCTGCCGGACC
CTGGCCGCGGCAGGGGGAGGGGGGGGAAAGGGGAAGAAGGGCATGGGAAA
GGAGGAGAACCCGGAAGCGTTTTACGAGGAGACGGTGGCGCCGCGTGCGC
GCTCCCTCGTGGACCGTCTGACCAAGCGTGTGGACCGCCGGGCAGACGCT
TTTGAGATTTATTTGGCCCGGAACATCTTCAAGGTGCCCGAGACAAAGCC
GATGCGGAAGGAGGATGCCATGGATGTGGTTGACCAGCAGGTCGGGGAGG
AGGAGGAGGAGGAGGAAGACCTGACTCCTCCCCCCTCGTCGGAGCTACCC
TCACCACAAGCTGAGGACGAAATGGATGAAGCCCTCACGGAAATGCGAGT
CAAGATCCGCACGCTCCGGAGACAGCGCAAGGCCATGGAAGCTCTCCTGA
CGAAAGCCACCGTCGACCTCGACTTGACCCAAGAAGCATACGCGCTCCGC
CTGCAGTTTCTGCAGACGTTGAACATGGACCCAAAGCTCGGGCCCCTCAG
TGAGGCACTAGAGGCCTTGACAGGGCAGGGAGGGCAGCTTAACGAGCTCG
TAGATGACGCAGATGGTAAGTGCAGGGGGAGGGAAGAAGGGAGGGAGAGG
GGGAGGGAGGGAGGGACGGATGGACGGACAGAGGGCAGATGAATGCCAGC
CATTCCGAGTTCATCATCTGCGATGGTGTCAGAGGTCAGCAGCAGCAACA
GCAGCAGCAAACTCACCATGGCAAAAGGTAACGAATGCCTCGCAAGCATT
AAGAGCAAGGAGGCGGCTTTCTACGGCGTGGATTCGGAGGACTTCACCGA
TCGAGTGGCGAGCATCATGACCGACTACGTGGAAGGGGCCATGCAAGATG
TGAAGCGGGATTTCTGCCGGACCCTGGCCGCGGCAGGGGGAGGGGGGGGA
AAGGGGAAGAAGGGCATGGGAAAGGAGGAGAACCCGGAAGCGTTTTACGA
GGAGACGGTGGCGCCGCGTGCGCGCTCCCTCGTGGACCGTCTGACCAAGC
GTGTGGACCGCCGGGCAGACGCTTTTGAGATTTATTTGGCCCGGAACATC
TTCAAGGTGCCCGAGACAAAGCCGATGCGGAAGGAGGATGCCATGGATGT
GGTTGACCAGCAGGTCGGGGAGGAGGAGGAGGAGGAGGAAGACCTGACTC
CTCCCCCCTCGTCGGAGCTACCCTCACCACAAGCTGAGGACGAAATGGAT
GAAGCCCTCACGGAAATGCGAGTCAAGATCCGCACGCTCCGGAGACAGCG
CAAGGCCATGGAAGCTCTCCTGACGAAAGCCACCGTCGACCTCGACTTGA
CCCAAGAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGACGTTGAACATG
GACCCAAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCCTTGACAGGGCA
GGGAGGGCAGCTTAACGAGCTCGTAGATGACGCAGATGGTAAGTGCAGGG
GGAGGGAAGAAGGGAGGGAGAGGGGGAGGGAGGGAGGGACGGATGGACGG
ACAGAGGGCAGATGAATGCCAGCCATTCCGAGTTCATCATCTGCGATGGT
GTCAGAGGTCAGCAGCAGCAACAGCAGCAGCAAACTCACCATGGCAAAAG
GTAACGAATGCCTCGCAAGCATTAAGAGCAAGGAGGCGGCTTTCTACGGC
GTGGATTCGGAGGACTTCACCGATCGAGTGGCGAGCATCATGACCGACTA
CGTGGAAGGGGCCATGCAAGATGTGAAGCGGGATTTCTGCCGGACCCTGG
CCGCGGCAGGGGGAGGGGGGGGAAAGGGGAAGAAGGGCATGGGAAAGGAG
GAGAACCCGGAAGCGTTTTACGAGGAGACGGTGGCGCCGCGTGCGCGCTC
CCTCGTGGACCGTCTGACCAAGCGTGTGGACCGCCGGGCAGACGCTTTTG
AGATTTATTTGGCCCGGAACATCTTCAAGGTGCCCGAGACAAAGCCGATG
CGGAAGGAGGATGCCATGGATGTGGTTGACCAGCAGGTCGGGGAGGAGGA
GGAGGAGGAGGAAGACCTGACTCCTCCCCCCTCGTCGGAGCTACCCTCAC
CACAAGCTGAGGACGAAATGGATGAAGCCCTCACGGAAATGCGAGTCAAG
ATCCGCACGCTCCGGAGACAGCGCAAGGCCATGGAAGCTCTCCTGACGAA
AGCCACCGTCGACCTCGACTTGACCCAAGAAGCATACGCGCTCCGCCTGC
AGTTTCTGCAGACGTTGAACATGGACCCAAAGCTCGGGCCCCTCAGTGAG
GCACTAGAGGCCTTGACAGGGCAGGGAGGGCAGCTTAACGAGCTCGTAGA
TGACGCAGATGGTAAGTGCAGGGGGAGGGAAGAAGGGAGGGAGAGGGGGA
GGGAGGGAGGGACGGATGGACGGACAGAGGGCAGATGA

Synonyms

Publications