jgi.p|Nanoce1779_2|580358, mRNA_2435 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580358
Unique Name	mRNA_2435
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1979
Alignment location	scaffold_5:342676..344988 -

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Properties


Property Name	Value
TranscriptId	580444
Track	FilteredModels2
ProteinId	580358

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:342676..344988 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580358	gene_2435	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580358	mRNA_2435-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2435	CDS_2435	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:342676..344988-
coding sequence from alignment at scaffold_5:342676..344988-

mRNA sequence

>mRNA_2435 ID=mRNA_2435|Name=jgi.p|Nanoce1779_2|580358|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp
ACAGGGGTCAAGCTAGCAGTGCTTGTTGCAAGCCCTCCTCACAGACGAAG
CAGGAAAAAGTCTTCCCAACCCGGAGCAGCCAAGGACTTGCAACAGAAAG
CAAGCACCCCCCTTTCCTTGCATCTTCATCATTCCCTCCACCTTCGCCTT
TTCACATCATCGACTATGTTCCGATTGTTTGTGCTACCCTTACTGCTGCT
GGCGGGCGCACATGCCTTCAACCCGTCGGTGGGTAAGGCGGGGCTATCCC
GCCTGCCTCCGGTCGGAGGACGTCAGGTGCGCGCTGAATCTTCTCTTTTG
AGACCTGTCACTGCCCGGGCAAGTCAAACCATAACCATGATGGCAGCAGT
GGGGAATCCCAAGAAGATTGTGGTACTAGGCGGCGACGGCTTCTGCGGCT
GGCCCACCGCCCTCTATCTCTCGGAGAAAGGCCATGACGTCATCATCGTC
GACAACCTCTCCCGGCGAAATATCGACAACGAACTCGGCTGCGTCTCCCT
GACCCCCATCTCAAGCATGGAGACCCGCATCGCTGCCTGGGAACAAGTCA
GTGGCAGACGCATGAAATTTGTCAACCTCGATGTAGCGAAGGATTACCAC
GAGATGGTCAAGCTCTTCCTCGACGAAAAACCCGACACCGTCGTCCATTT
TGCCGAGCAACGGGCCGCACCCTACTCCCAGAAGGGGGCGAAGCAAAAGA
GGTACACCGTCGATAACAACGTCTCGGGTACCAATAACCTGCTAGTGGCA
GTGGTGGAGAGCGGCCTCGACATCCACATCGTCCATCTCGGCACCATGGG
GGTCTACGGATACGGGACCAGCGGGGGCGAGATCCCAGAGGGCTATATCG
ACGTCATCCTCCCTGGTGGCCGACCCTCGTCGATCCTCCACCCAGCTTAC
CCCGGCTCAGTCTATCACACCACCAAGTGCTTGGATGCCTTGTTGTTCCA
ATTTTATAATAAAAACGACGGCGTTAAGGTCACGGACTTACACCAGGGCA
TCGTGTGGGGCACCAACACGCCTCAAACCATCAAGGACGAAAGGTTGATC
AATCGCTTTGATTACGATGGGGACTACGGCACAGTGTTGAACCGCTTCAT
CATTCAAGGCGCTCTGGGCGTGCCCTTGACAGTGTATGGCACGGGGGGCC
AAACGCGCGGGTTTATCCACATTACCGACACTGCCCGTTGCATCGAAATT
GCCGTTTCCAACCCTCCGAAAACCGGTGACAAAGTTCAAATTTTCAATCA
AATTGCCGAAACCTTGCGAGTGGGTGATTTGGCGAAGCTGGTGGGAGAAA
AGACGGGCGTGAGCATCAACTATCTCAAGAACCCACGATTAGAAAGCGCG
GAAAACGAGCTGGAGGTCGCGAATAGGAAATTCCGTGGCTTGGGTTTAGA
CCCGATATTGTTGGATTCGAATTTGGGATTAGTGGATGAGGTGAGAACAA
TTGCGTCTAAGTACGCGGATCGATGTGTGCGGGAGAAGATCCTGCCGGCC
AGCTTTTGGAATAAGAAGAGGGCGGCGGAGTGTGAAGTGAACACATTGGA
GGGGAACAAGTAGGGAGTGGGAGTAGGAGAGGAGGGAAGATGGATGAAAG
GAGGCTAAGAGATCATCGAGGGAGGTGGGTTTAGCTAGGACATTGAGACG
GGGAGTGGAAGGAAAAAAATAAGGCAGACAGTGTCCGATGATGGTGTCGG
CGCTGGCGTTTCTTGTGTCCAGTAAGAGAGGAGGAGGAGGATCGGGAGGG
GGATGAGGAGGAGGTAGAGCAAGAGGAGAGAAGAGAGACTGATATCTTTA
ATGAGAAGGAGGAGGGAGACATGCGTATGGCGACATGGAAGGGAAACAAA
CAATATCTCGCCCTCACAGGAGCTTTAAGCAAAAGCCTAATGCGAAGGAA
TATAACTCAGAGTAGAACGACAAACAATAACAACACCGAGCAACTCAAAG
AAAAAGGAAAGAACATAGTCTTAGGTACG

protein sequence of jgi.p|Nanoce1779_2|580358

>mRNA_2435-protein ID=mRNA_2435-protein|Name=jgi.p|Nanoce1779_2|580358|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MFRLFVLPLLLLAGAHAFNPSVGKAGLSRLPPVGGRQVRAESSLLRPVTA
RASQTITMMAAVGNPKKIVVLGGDGFCGWPTALYLSEKGHDVIIVDNLSR
RNIDNELGCVSLTPISSMETRIAAWEQVSGRRMKFVNLDVAKDYHEMVKL
FLDEKPDTVVHFAEQRAAPYSQKGAKQKRYTVDNNVSGTNNLLVAVVESG
LDIHIVHLGTMGVYGYGTSGGEIPEGYIDVILPGGRPSSILHPAYPGSVY
HTTKCLDALLFQFYNKNDGVKVTDLHQGIVWGTNTPQTIKDERLINRFDY
DGDYGTVLNRFIIQGALGVPLTVYGTGGQTRGFIHITDTARCIEIAVSNP
PKTGDKVQIFNQIAETLRVGDLAKLVGEKTGVSINYLKNPRLESAENELE
VANRKFRGLGLDPILLDSNLGLVDEVRTIASKYADRCVREKILPASFWNK
KRAAECEVNTLEGNK*

mRNA from alignment at scaffold_5:342676..344988-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2435 ID=mRNA_2435|Name=jgi.p|Nanoce1779_2|580358|organism=Nannochloropsis oceanica|type=mRNA|length=2313bp|location=Sequence derived from alignment at scaffold_5:342676..344988- (Nannochloropsis oceanica)
ACAGGGGTCAAGCTAGCAGTGCTTGTTGCAAGCCCTCCTCACAGACGAAG
CAGGAAAAAGTCTTCCCAACCCGGAGCAGCCAAGGACTTGCAACAGAAAG
CAAGCACCCCCCTTTCCTTGCATCTTCATCATTCCCTCCACCTTCGCCTT
TTCACATCATCGACTATGTTCCGATTGTTTGTGCTACCCTTACTGCTGCT
GGCGGGCGCACATGCCTTCAACCCGTCGGTGGGTAAGGCGGGGCTATCCC
GCCTGCCTCCGGTCGGAGGACGTCAGGTGCGCGCTGAATCTTCTCTTTTG
AGACCTGTCACTGCCCGGGCAAGTCAAACCATAACCATGATGGCAGCAGT
GGGGAATCCCAAGAAGATTGTGGTACTAGGTACGTAGTTGGTTGGGTGCA
TGGGAGAGGGGAGGAGGGGGGAGGTGGACAAACGGACGGTGGGGAGGCTC
GCCGGGTCGCTTATTTTAAGCGGGATCGAAAGTGGCGACCGTTGCGTTGT
AATGAGGCGAGGTTGCGAAGATCAAGTATGTGTGACTTTATCGTCATTGA
CGCAGAATTGATTTGTGAAGATGGAGTAGGAGAGATGGGGGGGGAAAGGA
GGCGGCATAAATAAAGTGCCATACTGTCGTTATAATCGTCATACAGTAAC
CACATCAACCCTTCATTTACTCCATCCCTTCCCTCCCTCCTTCATCCTCA
CCTTTCCCCGCAGGCGGCGACGGCTTCTGCGGCTGGCCCACCGCCCTCTA
TCTCTCGGAGAAAGGCCATGACGTCATCATCGTCGACAACCTCTCCCGGC
GAAATATCGACAACGAACTCGGCTGCGTCTCCCTGACCCCCATCTCAAGC
ATGGAGACCCGCATCGCTGCCTGGGAACAAGTCAGTGGCAGACGCATGAA
ATTTGTCAACCTCGATGTAGCGAAGGATTACCACGAGATGGTCAAGCTCT
TCCTCGACGAAAAACCCGACACCGTCGTCCATTTTGCCGAGCAACGGGCC
GCACCCTACTCCCAGAAGGGGGCGAAGCAAAAGAGGTACACCGTCGATAA
CAACGTCTCGGGTACCAATAACCTGCTAGTGGCAGTGGTGGAGAGCGGCC
TCGACATCCACATCGTCCATCTCGGCACCATGGGGGTCTACGGATACGGG
ACCAGCGGGGGCGAGATCCCAGAGGGCTATATCGACGTCATCCTCCCTGG
TGGCCGACCCTCGTCGATCCTCCACCCAGCTTACCCCGGCTCAGTCTATC
ACACCACCAAGTGCTTGGATGCCTTGTTGTTCCAATTTTATAATAAAAAC
GACGGCGTTAAGGTCACGGACTTACACCAGGGCATCGTGTGGGGCACCAA
CACGCCTCAAACCATCAAGGACGAAAGGTTGATCAATCGCTTTGATTACG
ATGGGGACTACGGCACAGTGTTGAACCGCTTCATCATTCAAGGCGCTCTG
GGCGTGCCCTTGACAGTGTATGGCACGGGGGGCCAAACGCGCGGGTTTAT
CCACATTACCGACACTGCCCGTTGCATCGAAATTGCCGTTTCCAACCCTC
CGAAAACCGGTGACAAAGTTCAAATTTTCAATCAAATTGCCGAAACCTTG
CGAGTGGGTGATTTGGCGAAGCTGGTGGGAGAAAAGACGGGCGTGAGCAT
CAACTATCTCAAGAACCCACGATTAGAAAGCGCGGAAAACGAGCTGGAGG
TCGCGAATAGGAAATTCCGTGGCTTGGGTTTAGACCCGATATTGTTGGAT
TCGAATTTGGGATTAGTGGATGAGGTGAGAACAATTGCGTCTAAGTACGC
GGATCGATGTGTGCGGGAGAAGATCCTGCCGGCCAGCTTTTGGAATAAGA
AGAGGGCGGCGGAGTGTGAAGTGAACACATTGGAGGGGAACAAGTAGGGA
GTGGGAGTAGGAGAGGAGGGAAGATGGATGAAAGGAGGCTAAGAGATCAT
CGAGGGAGGTGGGTTTAGCTAGGACATTGAGACGGGGAGTGGAAGGAAAA
AAATAAGGCAGACAGTGTCCGATGATGGTGTCGGCGCTGGCGTTTCTTGT
GTCCAGTAAGAGAGGAGGAGGAGGATCGGGAGGGGGATGAGGAGGAGGTA
GAGCAAGAGGAGAGAAGAGAGACTGATATCTTTAATGAGAAGGAGGAGGG
AGACATGCGTATGGCGACATGGAAGGGAAACAAACAATATCTCGCCCTCA
CAGGAGCTTTAAGCAAAAGCCTAATGCGAAGGAATATAACTCAGAGTAGA
ACGACAAACAATAACAACACCGAGCAACTCAAAGAAAAAGGAAAGAACAT
AGTCTTAGGTACG

Coding sequence (CDS) from alignment at scaffold_5:342676..344988-

>mRNA_2435 ID=mRNA_2435|Name=jgi.p|Nanoce1779_2|580358|organism=Nannochloropsis oceanica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_5:342676..344988- (Nannochloropsis oceanica)
AGGCGGCGACGGCTTCTGCGGCTGGCCCACCGCCCTCTATCTCTCGGAGA
AAGGCCATGACGTCATCATCGTCGACAACCTCTCCCGGCGAAATATCGAC
AACGAACTCGGCTGCGTCTCCCTGACCCCCATCTCAAGCATGGAGACCCG
CATCGCTGCCTGGGAACAAGTCAGTGGCAGACGCATGAAATTTGTCAACC
TCGATGTAGCGAAGGATTACCACGAGATGGTCAAGCTCTTCCTCGACGAA
AAACCCGACACCGTCGTCCATTTTGCCGAGCAACGGGCCGCACCCTACTC
CCAGAAGGGGGCGAAGCAAAAGAGGTACACCGTCGATAACAACGTCTCGG
GTACCAATAACCTGCTAGTGGCAGTGGTGGAGAGCGGCCTCGACATCCAC
ATCGTCCATCTCGGCACCATGGGGGTCTACGGATACGGGACCAGCGGGGG
CGAGATCCCAGAGGGCTATATCGACGTCATCCTCCCTGGTGGCCGACCCT
CGTCGATCCTCCACCCAGCTTACCCCGGCTCAGTCTATCACACCACCAAG
TGCTTGGATGCCTTGTTGTTCCAATTTTATAATAAAAACGACGGCGTTAA
GGTCACGGACTTACACCAGGGCATCGTGTGGGGCACCAACACGCCTCAAA
CCATCAAGGACGAAAGGTTGATCAATCGCTTTGATTACGATGGGGACTAC
GGCACAGTGTTGAACCGCTTCATCATTCAAGGCGCTCTGGGCGTGCCCTT
GACAGTGTATGGCACGGGGGGCCAAACGCGCGGGTTTATCCACATTACCG
ACACTGCCCGTTGCATCGAAATTGCCGTTTCCAACCCTCCGAAAACCGGT
GACAAAGTTCAAATTTTCAATCAAATTGCCGAAACCTTGCGAGTGGGTGA
TTTGGCGAAGCTGGTGGGAGAAAAGACGGGCGTGAGCATCAACTATCTCA
AGAACCCACGATTAGAAAGCGCGGAAAACGAGCTGGAGGTCGCGAATAGG
AAATTCCGTGGCTTGGGTTTAGACCCGATATTGTTGGATTCGAATTTGGG
ATTAGTGGATGAGGTGAGAACAATTGCGTCTAAGTACGCGGATCGATGTG
TGCGGGAGAAGATCCTGCCGGCCAGCTTTTGGAATAAGAAGAGGGCGGCG
GAGTGTGAAGTGAACACATTGGAGGGGAACAAGTAGATGTTCCGATTGTT
TGTGCTACCCTTACTGCTGCTGGCGGGCGCACATGCCTTCAACCCGTCGG
TGGGTAAGGCGGGGCTATCCCGCCTGCCTCCGGTCGGAGGACGTCAGGTG
CGCGCTGAATCTTCTCTTTTGAGACCTGTCACTGCCCGGGCAAGTCAAAC
CATAACCATGATGGCAGCAGTGGGGAATCCCAAGAAGATTGTGGTACTAG
GCGGCGACGGCTTCTGCGGCTGGCCCACCGCCCTCTATCTCTCGGAGAAA
GGCCATGACGTCATCATCGTCGACAACCTCTCCCGGCGAAATATCGACAA
CGAACTCGGCTGCGTCTCCCTGACCCCCATCTCAAGCATGGAGACCCGCA
TCGCTGCCTGGGAACAAGTCAGTGGCAGACGCATGAAATTTGTCAACCTC
GATGTAGCGAAGGATTACCACGAGATGGTCAAGCTCTTCCTCGACGAAAA
ACCCGACACCGTCGTCCATTTTGCCGAGCAACGGGCCGCACCCTACTCCC
AGAAGGGGGCGAAGCAAAAGAGGTACACCGTCGATAACAACGTCTCGGGT
ACCAATAACCTGCTAGTGGCAGTGGTGGAGAGCGGCCTCGACATCCACAT
CGTCCATCTCGGCACCATGGGGGTCTACGGATACGGGACCAGCGGGGGCG
AGATCCCAGAGGGCTATATCGACGTCATCCTCCCTGGTGGCCGACCCTCG
TCGATCCTCCACCCAGCTTACCCCGGCTCAGTCTATCACACCACCAAGTG
CTTGGATGCCTTGTTGTTCCAATTTTATAATAAAAACGACGGCGTTAAGG
TCACGGACTTACACCAGGGCATCGTGTGGGGCACCAACACGCCTCAAACC
ATCAAGGACGAAAGGTTGATCAATCGCTTTGATTACGATGGGGACTACGG
CACAGTGTTGAACCGCTTCATCATTCAAGGCGCTCTGGGCGTGCCCTTGA
CAGTGTATGGCACGGGGGGCCAAACGCGCGGGTTTATCCACATTACCGAC
ACTGCCCGTTGCATCGAAATTGCCGTTTCCAACCCTCCGAAAACCGGTGA
CAAAGTTCAAATTTTCAATCAAATTGCCGAAACCTTGCGAGTGGGTGATT
TGGCGAAGCTGGTGGGAGAAAAGACGGGCGTGAGCATCAACTATCTCAAG
AACCCACGATTAGAAAGCGCGGAAAACGAGCTGGAGGTCGCGAATAGGAA
ATTCCGTGGCTTGGGTTTAGACCCGATATTGTTGGATTCGAATTTGGGAT
TAGTGGATGAGGTGAGAACAATTGCGTCTAAGTACGCGGATCGATGTGTG
CGGGAGAAGATCCTGCCGGCCAGCTTTTGGAATAAGAAGAGGGCGGCGGA
GTGTGAAGTGAACACATTGGAGGGGAACAAGTAGATGTTCCGATTGTTTG
TGCTACCCTTACTGCTGCTGGCGGGCGCACATGCCTTCAACCCGTCGGTG
GGTAAGGCGGGGCTATCCCGCCTGCCTCCGGTCGGAGGACGTCAGGTGCG
CGCTGAATCTTCTCTTTTGAGACCTGTCACTGCCCGGGCAAGTCAAACCA
TAACCATGATGGCAGCAGTGGGGAATCCCAAGAAGATTGTGGTACT

Synonyms

Publications