jgi.p|Nanoce1779_2|581101, mRNA_2662 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581101
Unique Name	mRNA_2662
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1247
Alignment location	scaffold_5:874178..875424 +

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Properties


Property Name	Value
TranscriptId	581187
Track	FilteredModels2
ProteinId	581101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:874178..875424 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581101	gene_2662	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581101	mRNA_2662-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2662	CDS_2662	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:874178..875424+
coding sequence from alignment at scaffold_5:874178..875424+

mRNA sequence

>mRNA_2662 ID=mRNA_2662|Name=jgi.p|Nanoce1779_2|581101|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
TGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGTTGCTGCTGTTGCTG
CGGGGGCATCTGCCACCCTTGTAGCGGCGGCGGCGGCGGCCCGCCTCGTT
CTTCCAATCGACCTTGCGTGCGGAAACGCTCTTGCATTTCATTGACAATC
TTATGCTGAGATGGCTCATCCTCCTCGCGCTCTCTTTCATCCGGCGGCGG
GTAGGCGCCACGGGAAGAAGGGTAAGGCATCTGCGGCTGCTGCTGCTGGT
GCTGCTGGTACTGCTGGTGCCCGGGCGGCGGACCATAAGGCCCAGGATAC
CCCCTCGTAGAATCTCCCCATATCCCTCCTTGTGTCGGCGGCTGCTGTTG
CTGCTGCTGTGGGGACGAGTACGCTCCACCACCAGGCAAGAGCTGCGGTG
CTCCTCCTGCTCCTGCTCCTTCATACGAAGGGCCTCCGCCATAATAACCC
CCGCTCCCTCCTCCTGGCTGCTCGTAATCCCTCGCTAAATACCTCAAGCC
ATTCTCGACAGTACTGCTCTTGGAGACTGAATCAACGCCACTCGCGATCT
TCTCCTTCAAACTCCCCCACAATCCCTTAATCTTGGCACCCACGGACGGT
CCTTCCGGCTGCCCTGCTGCTGCCCCTCCTCCCTGCCCCCCAGGCTGCAC
GCCGTAGTAAGACCCATAGCCATGTTGCCCCTGGCTACTATAGAATGCTC
CATATCCTCCTCCTTGCCCCCCCTGCCCTCCATCATACGGCCCCTGTCCT
TGTCCTCCCTCGGCACCAAGGTCCCCGCCTTGCTGCTGTTGGGAAGGAGG
CGGCTGCTGGCCGTAACCACCCCATTGATCTTGTGTGTGTTGATGCTGTT
GGTGCTGTGGGTGCTGTTGGTGCTGTTGCTGATGGTGGGGAGGAAGAGGA
GGAGGAGAGTACTGTCCTGGCCCTGCCCCCGCAGGCGACCTTTGGTGCTG
CTGGTGTTGGTGTTGGTGATGGGGATGCGACTGGTAAGGACCACCAGGAG
GAGGGGGAGGAGATGAAGGAGGACCACCGGAATGTTGTGACGATGATGAG
GATTCGTAGGCTGGGTAGTCAAAGGCGAGTCGTCCGCGGTGGGAACGCTG
GTGGTGGAAAGCTGCAGAGGTAGAGGACGAGGGCGCTCCCCACATTCGGC
TGGAGGCCGCGACAGCTGCCGCGACGACCAGGGCCAGAAAGAGGAGGGGC
AAGGCCTGCATCGACAAGGGATGCCTTCTCATATCGTTCTTTTCTGT

protein sequence of jgi.p|Nanoce1779_2|581101

>mRNA_2662-protein ID=mRNA_2662-protein|Name=jgi.p|Nanoce1779_2|581101|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MLHILLLAPPALHHTAPVLVLPRHQGPRLAAVGKEAAAGRNHPIDLVCVD
AVGAVGAVGAVADGGEEEEEESTVLALPPQATFGAAGVGVGDGDATGKDH
QEEGEEMKEDHRNVVTMMRIRRLGSQRRVVRGGNAGGGKLQR*

mRNA from alignment at scaffold_5:874178..875424+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2662 ID=mRNA_2662|Name=jgi.p|Nanoce1779_2|581101|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at scaffold_5:874178..875424+ (Nannochloropsis oceanica)
TGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGTTGCTGCTGTTGCTG
CGGGGGCATCTGCCACCCTTGTAGCGGCGGCGGCGGCGGCCCGCCTCGTT
CTTCCAATCGACCTTGCGTGCGGAAACGCTCTTGCATTTCATTGACAATC
TTATGCTGAGATGGCTCATCCTCCTCGCGCTCTCTTTCATCCGGCGGCGG
GTAGGCGCCACGGGAAGAAGGGTAAGGCATCTGCGGCTGCTGCTGCTGGT
GCTGCTGGTACTGCTGGTGCCCGGGCGGCGGACCATAAGGCCCAGGATAC
CCCCTCGTAGAATCTCCCCATATCCCTCCTTGTGTCGGCGGCTGCTGTTG
CTGCTGCTGTGGGGACGAGTACGCTCCACCACCAGGCAAGAGCTGCGGTG
CTCCTCCTGCTCCTGCTCCTTCATACGAAGGGCCTCCGCCATAATAACCC
CCGCTCCCTCCTCCTGGCTGCTCGTAATCCCTCGCTAAATACCTCAAGCC
ATTCTCGACAGTACTGCTCTTGGAGACTGAATCAACGCCACTCGCGATCT
TCTCCTTCAAACTCCCCCACAATCCCTTAATCTTGGCACCCACGGACGGT
CCTTCCGGCTGCCCTGCTGCTGCCCCTCCTCCCTGCCCCCCAGGCTGCAC
GCCGTAGTAAGACCCATAGCCATGTTGCCCCTGGCTACTATAGAATGCTC
CATATCCTCCTCCTTGCCCCCCCTGCCCTCCATCATACGGCCCCTGTCCT
TGTCCTCCCTCGGCACCAAGGTCCCCGCCTTGCTGCTGTTGGGAAGGAGG
CGGCTGCTGGCCGTAACCACCCCATTGATCTTGTGTGTGTTGATGCTGTT
GGTGCTGTGGGTGCTGTTGGTGCTGTTGCTGATGGTGGGGAGGAAGAGGA
GGAGGAGAGTACTGTCCTGGCCCTGCCCCCGCAGGCGACCTTTGGTGCTG
CTGGTGTTGGTGTTGGTGATGGGGATGCGACTGGTAAGGACCACCAGGAG
GAGGGGGAGGAGATGAAGGAGGACCACCGGAATGTTGTGACGATGATGAG
GATTCGTAGGCTGGGTAGTCAAAGGCGAGTCGTCCGCGGTGGGAACGCTG
GTGGTGGAAAGCTGCAGAGGTAGAGGACGAGGGCGCTCCCCACATTCGGC
TGGAGGCCGCGACAGCTGCCGCGACGACCAGGGCCAGAAAGAGGAGGGGC
AAGGCCTGCATCGACAAGGGATGCCTTCTCATATCGTTCTTTTCTGT

Coding sequence (CDS) from alignment at scaffold_5:874178..875424+

>mRNA_2662 ID=mRNA_2662|Name=jgi.p|Nanoce1779_2|581101|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_5:874178..875424+ (Nannochloropsis oceanica)
ATGCTCCATATCCTCCTCCTTGCCCCCCCTGCCCTCCATCATACGGCCCC
TGTCCTTGTCCTCCCTCGGCACCAAGGTCCCCGCCTTGCTGCTGTTGGGA
AGGAGGCGGCTGCTGGCCGTAACCACCCCATTGATCTTGTGTGTGTTGAT
GCTGTTGGTGCTGTGGGTGCTGTTGGTGCTGTTGCTGATGGTGGGGAGGA
AGAGGAGGAGGAGAGTACTGTCCTGGCCCTGCCCCCGCAGGCGACCTTTG
GTGCTGCTGGTGTTGGTGTTGGTGATGGGGATGCGACTGGTAAGGACCAC
CAGGAGGAGGGGGAGGAGATGAAGGAGGACCACCGGAATGTTGTGACGAT
GATGAGGATTCGTAGGCTGGGTAGTCAAAGGCGAGTCGTCCGCGGTGGGA
ACGCTGGTGGTGGAAAGCTGCAGAGGTAG

Synonyms

Publications