jgi.p|Nanoce1779_2|611621, mRNA_10468 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611621
Unique NamemRNA_10468
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1302
Alignment locationscaffold_57:94739..96040 +

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Properties
Property NameValue
TranscriptId611707
TrackFilteredModels2
ProteinId611621
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:94739..96040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611621gene_10468Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611621mRNA_10468-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10468CDS_10468Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10468 ID=mRNA_10468|Name=jgi.p|Nanoce1779_2|611621|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
GGAGGGGGAGAGGGTGGGAGGGGAGGGAAGGCGAGAAGGAATATGAAGGA
GGGGAGCTTCGAGCGAGATGGCGATGAATATTATTTGCGACTCGTCTTGA
GGAAGAGTGGGTGGGTGTGCCTCCTCTTCACCATCCTTTTCCTCTCTCAG
CCTACCATCTTTTTGCTTGCTCAGCTTCCACCAACTCTATGACTACTGTA
CCCTACCATTCTCCCTCAGACTACCTTCTTACAGCATCAACTTCACCACT
CGAAATCAGAAGACTTCTTTTACCCTGCCCCCCTTTCTCCATGCTTACCC
ATCCATTCCATCTTATCCCACGGGCTGTTCGTTTCTGCACCGTGAGGCGA
TCCGAAGACCCTGGCAAGGGCAAACAAAGCTCCCTTCTATCCATGGGCTT
CCTCCCTCATTCCCTCTTTCCCTCCTGCCTCCCTCGAAATCTCCTCTCCT
TCTCCATCATCATTTCTCCCTCCCTCACTCCCGGGCCTCCTCCCTCTCTC
ACTGATACGTGCGGTTCTGCGTCATAAGCGAAGCAGCACATGGACAAGGG
CAAAACAAGCCCTTTCCCTTTTCTCAATTCCTTCTTCCCAAATTTCACCC
ATCCATGTTTCCTCCCTTCCTTCCCACCTTACCACAGACCATCCGCTACT
GCATCGTGAAGCGGAGCAAGGACCCGGGCAAGGGCAAATGGAGCCTGCCA
GGAGGAAGCGTGGAACTAGGGGAAGAGATTTTGTCGGCTGCGGCAAGGGA
GGCGAGGGAAGAGACAGGCCTAACTCATGAAGACTTGCGTTTTTACCCGT
ACGCGGTTTGTACGACCGACGCTATCTACTGGCGAGAGAAGGATGCGGAT
GGGAAGAGGGAAAAGGAGGTGCAGTTCCACTATGTGATAACGCACCAGGC
AGCGTGGATCACGACAGGGGCGGTGGAGCGGGCTAGGGCGGGGGATGATG
CCGCTGAGGTGGCTTTCAAAACGCTGGAGGAATTGAAGACAATGACCCTT
GACGGGACGCTGGTGGGGAGTGTGTGCGACGTAGTCATGCGTGTGGAGCG
GCTGGTTAGCAAGGGCGTGATTAATGTGGAGTTTGACTTGGTCACTTTGG
AAGCTTGAATGTAAAGACTGAGAGAGGAAGGAAGGTGAAAAGGAAGGGTA
TAGATAGGTTGGTTCGGTGTGCAGACGAAAAAAATGGAAGGAAACCTTTC
ATTTCGGCCACTCTGGCCCTCCCCAGGCATTTGGCTACCGGGTATCGACG
ACAGGGAAACTTGAATCTCCATTTCGTGAGACAGTAACAAAACAAATCCC
CC
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protein sequence of jgi.p|Nanoce1779_2|611621

>mRNA_10468-protein ID=mRNA_10468-protein|Name=jgi.p|Nanoce1779_2|611621|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFPPFLPTLPQTIRYCIVKRSKDPGKGKWSLPGGSVELGEEILSAAAREA
REETGLTHEDLRFYPYAVCTTDAIYWREKDADGKREKEVQFHYVITHQAA
WITTGAVERARAGDDAAEVAFKTLEELKTMTLDGTLVGSVCDVVMRVERL
VSKGVINVEFDLVTLEA*
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mRNA from alignment at scaffold_57:94739..96040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10468 ID=mRNA_10468|Name=jgi.p|Nanoce1779_2|611621|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp|location=Sequence derived from alignment at scaffold_57:94739..96040+ (Nannochloropsis oceanica)
GGAGGGGGAGAGGGTGGGAGGGGAGGGAAGGCGAGAAGGAATATGAAGGA
GGGGAGCTTCGAGCGAGATGGCGATGAATATTATTTGCGACTCGTCTTGA
GGAAGAGTGGGTGGGTGTGCCTCCTCTTCACCATCCTTTTCCTCTCTCAG
CCTACCATCTTTTTGCTTGCTCAGCTTCCACCAACTCTATGACTACTGTA
CCCTACCATTCTCCCTCAGACTACCTTCTTACAGCATCAACTTCACCACT
CGAAATCAGAAGACTTCTTTTACCCTGCCCCCCTTTCTCCATGCTTACCC
ATCCATTCCATCTTATCCCACGGGCTGTTCGTTTCTGCACCGTGAGGCGA
TCCGAAGACCCTGGCAAGGGCAAACAAAGCTCCCTTCTATCCATGGGCTT
CCTCCCTCATTCCCTCTTTCCCTCCTGCCTCCCTCGAAATCTCCTCTCCT
TCTCCATCATCATTTCTCCCTCCCTCACTCCCGGGCCTCCTCCCTCTCTC
ACTGATACGTGCGGTTCTGCGTCATAAGCGAAGCAGCACATGGACAAGGG
CAAAACAAGCCCTTTCCCTTTTCTCAATTCCTTCTTCCCAAATTTCACCC
ATCCATGTTTCCTCCCTTCCTTCCCACCTTACCACAGACCATCCGCTACT
GCATCGTGAAGCGGAGCAAGGACCCGGGCAAGGGCAAATGGAGCCTGCCA
GGAGGAAGCGTGGAACTAGGGGAAGAGATTTTGTCGGCTGCGGCAAGGGA
GGCGAGGGAAGAGACAGGCCTAACTCATGAAGACTTGCGTTTTTACCCGT
ACGCGGTTTGTACGACCGACGCTATCTACTGGCGAGAGAAGGATGCGGAT
GGGAAGAGGGAAAAGGAGGTGCAGTTCCACTATGTGATAACGCACCAGGC
AGCGTGGATCACGACAGGGGCGGTGGAGCGGGCTAGGGCGGGGGATGATG
CCGCTGAGGTGGCTTTCAAAACGCTGGAGGAATTGAAGACAATGACCCTT
GACGGGACGCTGGTGGGGAGTGTGTGCGACGTAGTCATGCGTGTGGAGCG
GCTGGTTAGCAAGGGCGTGATTAATGTGGAGTTTGACTTGGTCACTTTGG
AAGCTTGAATGTAAAGACTGAGAGAGGAAGGAAGGTGAAAAGGAAGGGTA
TAGATAGGTTGGTTCGGTGTGCAGACGAAAAAAATGGAAGGAAACCTTTC
ATTTCGGCCACTCTGGCCCTCCCCAGGCATTTGGCTACCGGGTATCGACG
ACAGGGAAACTTGAATCTCCATTTCGTGAGACAGTAACAAAACAAATCCC
CC
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Coding sequence (CDS) from alignment at scaffold_57:94739..96040+

>mRNA_10468 ID=mRNA_10468|Name=jgi.p|Nanoce1779_2|611621|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_57:94739..96040+ (Nannochloropsis oceanica)
ATGTTTCCTCCCTTCCTTCCCACCTTACCACAGACCATCCGCTACTGCAT
CGTGAAGCGGAGCAAGGACCCGGGCAAGGGCAAATGGAGCCTGCCAGGAG
GAAGCGTGGAACTAGGGGAAGAGATTTTGTCGGCTGCGGCAAGGGAGGCG
AGGGAAGAGACAGGCCTAACTCATGAAGACTTGCGTTTTTACCCGTACGC
GGTTTGTACGACCGACGCTATCTACTGGCGAGAGAAGGATGCGGATGGGA
AGAGGGAAAAGGAGGTGCAGTTCCACTATGTGATAACGCACCAGGCAGCG
TGGATCACGACAGGGGCGGTGGAGCGGGCTAGGGCGGGGGATGATGCCGC
TGAGGTGGCTTTCAAAACGCTGGAGGAATTGAAGACAATGACCCTTGACG
GGACGCTGGTGGGGAGTGTGTGCGACGTAGTCATGCGTGTGGAGCGGCTG
GTTAGCAAGGGCGTGATTAATGTGGAGTTTGACTTGGTCACTTTGGAAGC
TTGA
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Synonyms
Publications