jgi.p|Nanoce1779_2|582070, mRNA_3422 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582070
Unique Name	mRNA_3422
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1490
Alignment location	scaffold_6:282096..283585 +

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Properties


Property Name	Value
TranscriptId	582156
Track	FilteredModels2
ProteinId	582070

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:282096..283585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582070	gene_3422	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582070	mRNA_3422-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3422	CDS_3422	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:282096..283585+
coding sequence from alignment at scaffold_6:282096..283585+

mRNA sequence

>mRNA_3422 ID=mRNA_3422|Name=jgi.p|Nanoce1779_2|582070|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp
CCTCCGCTGTCACCATCTCTTCCTCTTTCGGCGGCATCACCCACACCGCC
GTTCCCTCCTCTTCCTGTTCCTTGTATTTCCCTTGTGACGACACCGCTAG
TAGTTGCTGCTGCTGCTGCTGATGGTGGTGGTGGATGCTGGCAACGTGGG
AGTGAGAGATCAAAGTAGGGGTCGGTTGGGAGGCATGCCAGAAACACACC
ATGAGACAAAGGACCGAAACTGCTAGTGGGATCCATCTCAAGGGTAAAAG
AGAGTGTATTAAGGTCTGAATCTTTTGTGTGGCGGCTGTGACGGCATTAC
GGGCTCCACTGGTGAGGGAGGGGAAGGAGAAAGACGAGGAGGAAGGAGGT
GAGGCAGACGAAGCAGCAGCAGGGTTGTTTTTGCGGCCTCTGTCGGTGTT
GCAGTCCTCCCTGCTCTTCTCGCTGTTTCTACAGAAAATGCTTGAGCTGT
CGGTGTTGCTGCTGGCCAGTGCCGAGCCTCCGCCCGCCGTCCCCACCTCC
TTCTCCGACGCTCCTGCTCTTGTGTACTCCAACACTCCCCGAATTCCCTG
TTGGTAAAGCGGCCAATGCTGCTGTTGGTGGCCGCGACGTCCAGGATAGT
AGCGGCGGACAAGAGGGGACTCGGCAAGTGCTTGAGTGGTCCGTTGCAGG
CCACTCGTCAACAAGGCAACGTACGACAACCGCTTTTCTTCAAAGCCATC
CCCCCCCTCCCCTTCCTCCTCTTCATGCCCTTCCTCTTCCTCTTCCTCAT
CGTCCTCGTCCTCTTCGTCGGTGCTGGCTTCGCCTTTCTCCGATGAAGGG
GCCCGCGGGCCATTGGACAGTCTCATGGTGGCCATGGTGGTCGTTGTCCT
GGTCGTCATCGTTGCAGAAGCGGCCGCCGAGAGCGCCTTCATCAACAAAG
ATGAGGCCATGCTTCGATTACCTTTCGATGGCTGTCCTACTACTGCCTCC
TCTGCGGGGATGGGGGTTATGTCCTCGCCACGTATGGGGGAGGGAAAGGT
GGAGGGAGGGCTTCCACCTCTCTTGGGGGGAGAGGCCCGTCGGAGAAGCT
CCAGATAAGCCAACGTCAGGCTTTCGGGGGTGATAGCATTTGCGTTATGG
CTGCTGCTGCTACTGTTTTTGTTGTGATTGTGACTGCTGATACTAGCCGA
AAGGTGATGGTCATGGTGATGGTGGTGGTGGCCTTTGCTTGTACCGTCCA
GGGCGTTGGTACTGCAGCTACTCTCGAGGTTGACACCCACATTCGTGGCG
GATTCAGTGGAGCTGATATCCTGTCGTTGTTCCTGAGACGGGTTGTACTG
CTTGCCATAGCTGTTCTGAAGTTGCTGCTGCTCCTGGGCTGACAGGGCGG
CACTGGCGCTTGCCGCTGAAGTTGTAGCAATGGAGGAGGGGCCTCCGTCT
CCAGGAACCACGGCAACGCGTACTCCTCCCAGCTGCCGTTGTTCAGATTG
ATTGTTGGTGTCTTGCATCGTTGAAAAAGGCCTCGCCTGT

protein sequence of jgi.p|Nanoce1779_2|582070

>mRNA_3422-protein ID=mRNA_3422-protein|Name=jgi.p|Nanoce1779_2|582070|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MKGPAGHWTVSWWPWWSLSWSSSLQKRPPRAPSSTKMRPCFDYLSMAVLL
LPPLRGWGLCPRHVWGRERWREGFHLSWGERPVGEAPDKPTSGFRG*

mRNA from alignment at scaffold_6:282096..283585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3422 ID=mRNA_3422|Name=jgi.p|Nanoce1779_2|582070|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp|location=Sequence derived from alignment at scaffold_6:282096..283585+ (Nannochloropsis oceanica)
CCTCCGCTGTCACCATCTCTTCCTCTTTCGGCGGCATCACCCACACCGCC
GTTCCCTCCTCTTCCTGTTCCTTGTATTTCCCTTGTGACGACACCGCTAG
TAGTTGCTGCTGCTGCTGCTGATGGTGGTGGTGGATGCTGGCAACGTGGG
AGTGAGAGATCAAAGTAGGGGTCGGTTGGGAGGCATGCCAGAAACACACC
ATGAGACAAAGGACCGAAACTGCTAGTGGGATCCATCTCAAGGGTAAAAG
AGAGTGTATTAAGGTCTGAATCTTTTGTGTGGCGGCTGTGACGGCATTAC
GGGCTCCACTGGTGAGGGAGGGGAAGGAGAAAGACGAGGAGGAAGGAGGT
GAGGCAGACGAAGCAGCAGCAGGGTTGTTTTTGCGGCCTCTGTCGGTGTT
GCAGTCCTCCCTGCTCTTCTCGCTGTTTCTACAGAAAATGCTTGAGCTGT
CGGTGTTGCTGCTGGCCAGTGCCGAGCCTCCGCCCGCCGTCCCCACCTCC
TTCTCCGACGCTCCTGCTCTTGTGTACTCCAACACTCCCCGAATTCCCTG
TTGGTAAAGCGGCCAATGCTGCTGTTGGTGGCCGCGACGTCCAGGATAGT
AGCGGCGGACAAGAGGGGACTCGGCAAGTGCTTGAGTGGTCCGTTGCAGG
CCACTCGTCAACAAGGCAACGTACGACAACCGCTTTTCTTCAAAGCCATC
CCCCCCCTCCCCTTCCTCCTCTTCATGCCCTTCCTCTTCCTCTTCCTCAT
CGTCCTCGTCCTCTTCGTCGGTGCTGGCTTCGCCTTTCTCCGATGAAGGG
GCCCGCGGGCCATTGGACAGTCTCATGGTGGCCATGGTGGTCGTTGTCCT
GGTCGTCATCGTTGCAGAAGCGGCCGCCGAGAGCGCCTTCATCAACAAAG
ATGAGGCCATGCTTCGATTACCTTTCGATGGCTGTCCTACTACTGCCTCC
TCTGCGGGGATGGGGGTTATGTCCTCGCCACGTATGGGGGAGGGAAAGGT
GGAGGGAGGGCTTCCACCTCTCTTGGGGGGAGAGGCCCGTCGGAGAAGCT
CCAGATAAGCCAACGTCAGGCTTTCGGGGGTGATAGCATTTGCGTTATGG
CTGCTGCTGCTACTGTTTTTGTTGTGATTGTGACTGCTGATACTAGCCGA
AAGGTGATGGTCATGGTGATGGTGGTGGTGGCCTTTGCTTGTACCGTCCA
GGGCGTTGGTACTGCAGCTACTCTCGAGGTTGACACCCACATTCGTGGCG
GATTCAGTGGAGCTGATATCCTGTCGTTGTTCCTGAGACGGGTTGTACTG
CTTGCCATAGCTGTTCTGAAGTTGCTGCTGCTCCTGGGCTGACAGGGCGG
CACTGGCGCTTGCCGCTGAAGTTGTAGCAATGGAGGAGGGGCCTCCGTCT
CCAGGAACCACGGCAACGCGTACTCCTCCCAGCTGCCGTTGTTCAGATTG
ATTGTTGGTGTCTTGCATCGTTGAAAAAGGCCTCGCCTGT

Coding sequence (CDS) from alignment at scaffold_6:282096..283585+

>mRNA_3422 ID=mRNA_3422|Name=jgi.p|Nanoce1779_2|582070|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_6:282096..283585+ (Nannochloropsis oceanica)
ATGAAGGGGCCCGCGGGCCATTGGACAGTCTCATGGTGGCCATGGTGGTC
GTTGTCCTGGTCGTCATCGTTGCAGAAGCGGCCGCCGAGAGCGCCTTCAT
CAACAAAGATGAGGCCATGCTTCGATTACCTTTCGATGGCTGTCCTACTA
CTGCCTCCTCTGCGGGGATGGGGGTTATGTCCTCGCCACGTATGGGGGAG
GGAAAGGTGGAGGGAGGGCTTCCACCTCTCTTGGGGGGAGAGGCCCGTCG
GAGAAGCTCCAGATAAGCCAACGTCAGGCTTTCGGGGGTGA

Synonyms

Publications