jgi.p|Nanoce1779_2|582103, mRNA_3431 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582103
Unique NamemRNA_3431
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1633
Alignment locationscaffold_6:307413..309196 -

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Properties
Property NameValue
TranscriptId582189
TrackFilteredModels2
ProteinId582103
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:307413..309196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582103gene_3431Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582103mRNA_3431-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3431CDS_3431Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3431 ID=mRNA_3431|Name=jgi.p|Nanoce1779_2|582103|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp
GCTGAGGTCGATGGTGCCGAAGTACAAACCTATGAGAAAGAGATGGATGT
AAGTGCAATTCGAGAAACAAGAAAATTTGAGTCTTGGGCGAGGCGGCAAA
GAAGAGAGGGCGCTTCGCATCATAAATAACAGTGAAGGGTTTGTGCGGGG
CCCTACACAACCACGCGACCCCATCGACTCTCTTAGGCAGCAGAAGGGCG
ACTACACTAAGGGTAGACACTCAGGCACATATAGACCGTCATCTTTTTCG
TCGACCAGCCGAATCCGAGCCACAGCGAGGCCTATCTCCCTCACCATCAA
CACACGCAAGCACCATGGGAAAGAAGAAGTCATCCCTCAAGCGGGAGGAG
GCTCCAGACATTTGGTGCTACTATTGCGATCGTGCCTTCGACGACGAGGC
CACCCTGCTACTGCATCAGAAGAACAGACACTTTAAATGCCAGCTGTGCC
CGCGGAAGCTGACCTCGGCGAGCGGGATGGTCATTCACGTGGCGCAAGTC
CACAAGGAGACCCTCAAAAAGGTCCCTGGGGCCAAGGAAGGCCGGGACTC
GGTTGACGTGGAGGTATTCGGCATGCAAGGCATCCCTATAGAATTCCGGA
TGGAACGCACCGCCAAGAAGCAGCAGAAGGCAGGGAATGGCGAGAACGGC
GATGCGGGGGGCGGGGGGGCTCCTCTCCCTCCCGGCATGCCACCAGGGAT
GGGAATGCAAGGCTTTCCTCCCGGCATGGGTGGTCCTGGGGGGCCCAACG
GAATGTATGGTCAAATGCCGCATATGCCTCCTCCACCGAGCGGCTCATTT
GCCCCTGGTATGGGTGGTCCACCGGGGTTTCAACAAGGAGGCTTTCCCCG
TCCACCAATGCAGGGGGGGCAGATGCCGCCAGGAGGGATGATGGGTGGGA
TGGGCCCGCCGGGAATGATGATGATGCAAAATCAAGGTGGCATGCCTCCG
CGGGTATTTCCGTTTCAGCAGCAGCAGCCGCTAGCAAGAGGGTTCCCTCC
ACAGGGACCTCCGGGATGGATGGGTGGTGGGCCATTGGGTGGTGGAGGCT
ACATTCCTGGCCAGCATCAGCAGCAGCAACAACAACAACAGCAACAAATG
CACCCCCAACAGCAACAGCAGATGATGATGCAACAACACCAACAGCATCC
ACACCACCATAATCCCGCCATGGTTCCACCTGGACCCCCCCCTCATCCCG
GTATGCCTCCTCCTGGCCCACCTCCCAATGGTCTCCCTGTTGGGATGCCT
CGACCCTTGTTCCCCGTCGCTGGCTTTGCCGCAGGCGGCCTCTCTTCTGC
TTCATCTCCATCATCGTCCGGACATCCTGCTGTTTCTTCTGCTAGCACGC
CGTCAGCTACAGCGTCGGAGGCTGCTGCTGCTGCTGCTGCGACGGCTGCA
GCGGCAGGCAAGGATTTGAAGTTGGTGTATGCGGAGGAAGCCGAGTCGAT
GGAGGAGCGGCGGGCGAAGCTGCCCAAATATCATTATGATGAAGGGGCTG
TTTTTGCTGGCATGGCATCGTCATGAGTGGAAGTTGGGGGAATAAGAGAA
AAGGGTTGATGATGACGACCTCGTAATGAGTGTGTAAGAAGAAATGACAC
AAAAAGCAAACAAAGAACCGGTCAAGGCATAGA
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protein sequence of jgi.p|Nanoce1779_2|582103

>mRNA_3431-protein ID=mRNA_3431-protein|Name=jgi.p|Nanoce1779_2|582103|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MGKKKSSLKREEAPDIWCYYCDRAFDDEATLLLHQKNRHFKCQLCPRKLT
SASGMVIHVAQVHKETLKKVPGAKEGRDSVDVEVFGMQGIPIEFRMERTA
KKQQKAGNGENGDAGGGGAPLPPGMPPGMGMQGFPPGMGGPGGPNGMYGQ
MPHMPPPPSGSFAPGMGGPPGFQQGGFPRPPMQGGQMPPGGMMGGMGPPG
MMMMQNQGGMPPRVFPFQQQQPLARGFPPQGPPGWMGGGPLGGGGYIPGQ
HQQQQQQQQQQMHPQQQQQMMMQQHQQHPHHHNPAMVPPGPPPHPGMPPP
GPPPNGLPVGMPRPLFPVAGFAAGGLSSASSPSSSGHPAVSSASTPSATA
SEAAAAAAATAAAAGKDLKLVYAEEAESMEERRAKLPKYHYDEGAVFAGM
ASS*
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mRNA from alignment at scaffold_6:307413..309196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3431 ID=mRNA_3431|Name=jgi.p|Nanoce1779_2|582103|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp|location=Sequence derived from alignment at scaffold_6:307413..309196- (Nannochloropsis oceanica)
GCTGAGGTCGATGGTGCCGAAGTACAAACCTATGAGAAAGAGATGGATGT
AAGTGCAATTCGAGAAACAAGAAAATTTGAGTCTTGGGCGAGGCGGCAAA
GAAGAGAGGGCGCTTCGCATCATAAATAACAGTGAAGGGTTTGTGCGGGG
CCCTACACAACCACGCGACCCCATCGACTCTCTTAGGCAGCAGAAGGGCG
ACTACACTAAGGGTAGACACTCAGGTCAGCGCGACGGCGGGGCTCGGTCT
TCTTCTACAACAAACCCACCCACCAAACTCCAATCCCCACCCCTAACGCC
ATCCATGGCATCATCATCAAATCTAGTCTAGGAACTCATCTCATAGAAGC
ACCGGTCCATCCATATCATCCATAGGCACATATAGACCGTCATCTTTTTC
GTCGACCAGCCGAATCCGAGCCACAGCGAGGCCTATCTCCCTCACCATCA
ACACACGCAAGCACCATGGGAAAGAAGAAGTCATCCCTCAAGCGGGAGGA
GGCTCCAGACATTTGGTGCTACTATTGCGATCGTGCCTTCGACGACGAGG
CCACCCTGCTACTGCATCAGAAGAACAGACACTTTAAATGCCAGCTGTGC
CCGCGGAAGCTGACCTCGGCGAGCGGGATGGTCATTCACGTGGCGCAAGT
CCACAAGGAGACCCTCAAAAAGGTCCCTGGGGCCAAGGAAGGCCGGGACT
CGGTTGACGTGGAGGTATTCGGCATGCAAGGCATCCCTATAGAATTCCGG
ATGGAACGCACCGCCAAGAAGCAGCAGAAGGCAGGGAATGGCGAGAACGG
CGATGCGGGGGGCGGGGGGGCTCCTCTCCCTCCCGGCATGCCACCAGGGA
TGGGAATGCAAGGCTTTCCTCCCGGCATGGGTGGTCCTGGGGGGCCCAAC
GGAATGTATGGTCAAATGCCGCATATGCCTCCTCCACCGAGCGGCTCATT
TGCCCCTGGTATGGGTGGTCCACCGGGGTTTCAACAAGGAGGCTTTCCCC
GTCCACCAATGCAGGGGGGGCAGATGCCGCCAGGAGGGATGATGGGTGGG
ATGGGCCCGCCGGGAATGATGATGATGCAAAATCAAGGTGGCATGCCTCC
GCGGGTATTTCCGTTTCAGCAGCAGCAGCCGCTAGCAAGAGGGTTCCCTC
CACAGGGACCTCCGGGATGGATGGGTGGTGGGCCATTGGGTGGTGGAGGC
TACATTCCTGGCCAGCATCAGCAGCAGCAACAACAACAACAGCAACAAAT
GCACCCCCAACAGCAACAGCAGATGATGATGCAACAACACCAACAGCATC
CACACCACCATAATCCCGCCATGGTTCCACCTGGACCCCCCCCTCATCCC
GGTATGCCTCCTCCTGGCCCACCTCCCAATGGTCTCCCTGTTGGGATGCC
TCGACCCTTGTTCCCCGTCGCTGGCTTTGCCGCAGGCGGCCTCTCTTCTG
CTTCATCTCCATCATCGTCCGGACATCCTGCTGTTTCTTCTGCTAGCACG
CCGTCAGCTACAGCGTCGGAGGCTGCTGCTGCTGCTGCTGCGACGGCTGC
AGCGGCAGGCAAGGATTTGAAGTTGGTGTATGCGGAGGAAGCCGAGTCGA
TGGAGGAGCGGCGGGCGAAGCTGCCCAAATATCATTATGATGAAGGGGCT
GTTTTTGCTGGCATGGCATCGTCATGAGTGGAAGTTGGGGGAATAAGAGA
AAAGGGTTGATGATGACGACCTCGTAATGAGTGTGTAAGAAGAAATGACA
CAAAAAGCAAACAAAGAACCGGTCAAGGCATAGA
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Coding sequence (CDS) from alignment at scaffold_6:307413..309196-

>mRNA_3431 ID=mRNA_3431|Name=jgi.p|Nanoce1779_2|582103|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_6:307413..309196- (Nannochloropsis oceanica)
ATGGGAAAGAAGAAGTCATCCCTCAAGCGGGAGGAGGCTCCAGACATTTG
GTGCTACTATTGCGATCGTGCCTTCGACGACGAGGCCACCCTGCTACTGC
ATCAGAAGAACAGACACTTTAAATGCCAGCTGTGCCCGCGGAAGCTGACC
TCGGCGAGCGGGATGGTCATTCACGTGGCGCAAGTCCACAAGGAGACCCT
CAAAAAGGTCCCTGGGGCCAAGGAAGGCCGGGACTCGGTTGACGTGGAGG
TATTCGGCATGCAAGGCATCCCTATAGAATTCCGGATGGAACGCACCGCC
AAGAAGCAGCAGAAGGCAGGGAATGGCGAGAACGGCGATGCGGGGGGCGG
GGGGGCTCCTCTCCCTCCCGGCATGCCACCAGGGATGGGAATGCAAGGCT
TTCCTCCCGGCATGGGTGGTCCTGGGGGGCCCAACGGAATGTATGGTCAA
ATGCCGCATATGCCTCCTCCACCGAGCGGCTCATTTGCCCCTGGTATGGG
TGGTCCACCGGGGTTTCAACAAGGAGGCTTTCCCCGTCCACCAATGCAGG
GGGGGCAGATGCCGCCAGGAGGGATGATGGGTGGGATGGGCCCGCCGGGA
ATGATGATGATGCAAAATCAAGGTGGCATGCCTCCGCGGGTATTTCCGTT
TCAGCAGCAGCAGCCGCTAGCAAGAGGGTTCCCTCCACAGGGACCTCCGG
GATGGATGGGTGGTGGGCCATTGGGTGGTGGAGGCTACATTCCTGGCCAG
CATCAGCAGCAGCAACAACAACAACAGCAACAAATGCACCCCCAACAGCA
ACAGCAGATGATGATGCAACAACACCAACAGCATCCACACCACCATAATC
CCGCCATGGTTCCACCTGGACCCCCCCCTCATCCCGGTATGCCTCCTCCT
GGCCCACCTCCCAATGGTCTCCCTGTTGGGATGCCTCGACCCTTGTTCCC
CGTCGCTGGCTTTGCCGCAGGCGGCCTCTCTTCTGCTTCATCTCCATCAT
CGTCCGGACATCCTGCTGTTTCTTCTGCTAGCACGCCGTCAGCTACAGCG
TCGGAGGCTGCTGCTGCTGCTGCTGCGACGGCTGCAGCGGCAGGCAAGGA
TTTGAAGTTGGTGTATGCGGAGGAAGCCGAGTCGATGGAGGAGCGGCGGG
CGAAGCTGCCCAAATATCATTATGATGAAGGGGCTGTTTTTGCTGGCATG
GCATCGTCATGA
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Synonyms
Publications