jgi.p|Nanoce1779_2|582995, mRNA_3677 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582995
Unique NamemRNA_3677
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length840
Alignment locationscaffold_6:940707..941546 -

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Properties
Property NameValue
TranscriptId583081
TrackFilteredModels2
ProteinId582995
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:940707..941546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582995gene_3677Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582995mRNA_3677-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3677CDS_3677Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3677 ID=mRNA_3677|Name=jgi.p|Nanoce1779_2|582995|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
ACAGCACCAGAGGCCACGCGCTCTTCCTGCGCTTGCAGCCAAGCCTCTCT
ACTCGCATCTCCCATCGTCCCCGCCCTCCAGCTCCTCCCGAGCCTGTCCC
CCGGCCCTTCTCTACCACTAATCACATACCCCAAAAAATGGCGGAACGCA
AGGCTGTCATCAAAAACGCGGACATGTCGGAGGACATGCAGCAAGACGCT
GTCGACTGCGCGTCGCAGGCACTGGACCAATTCAATATCGAGAAAGACAT
TGCAGCTTACGTGAAGAAGGAGTTTGATAAGAAGTACAACCCGACTTGGC
ATTGCATTGTTGGGAGGAACTTTGGTTCTTACGTCACGCATGAAACAAAG
CACTTCATTTATTTTTACTTGGGGCAGGTGGCTATTCTTTTATTCAAATC
GGGTTAATGCCAGAACTAGAGAGAAGCGTCAGCGGTTATTTACGGAATTT
TGTTTGTGTATGATAGAAAACGGGAGAAAAGGAATGGAGACGACAATAAG
GGAGGTGTATATTTTTTAGAGGAGTCAGATGCAAGGTCAGGATGCTGTCA
TAAGGAAAAGAAGTGGAAAAGTTAAATAAAGGAGATTGTCTTCCATCAGC
TTTGTGCTACTTACTTGTGGTGCGTCTTAGAGGGAAGGGGGACAAAGAAT
GGAAGAAGGGAAGATGCGTGCGTGTCTCCAATGCATCACGATAAGAGAGG
AGAATCAACGGATAATCAAGGAGACACGGGCGACAAGAAGCATACATGAG
ATAATATTATCGACGGGAATGGTGGCGGTGGTGGTGGTAGTGATGGCGTC
GGCGGCTGCTGCAGCTGCACGGAGAGCGGAGAGGAAAGAG
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protein sequence of jgi.p|Nanoce1779_2|582995

>mRNA_3677-protein ID=mRNA_3677-protein|Name=jgi.p|Nanoce1779_2|582995|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKY
NPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG*
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mRNA from alignment at scaffold_6:940707..941546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3677 ID=mRNA_3677|Name=jgi.p|Nanoce1779_2|582995|organism=Nannochloropsis oceanica|type=mRNA|length=840bp|location=Sequence derived from alignment at scaffold_6:940707..941546- (Nannochloropsis oceanica)
ACAGCACCAGAGGCCACGCGCTCTTCCTGCGCTTGCAGCCAAGCCTCTCT
ACTCGCATCTCCCATCGTCCCCGCCCTCCAGCTCCTCCCGAGCCTGTCCC
CCGGCCCTTCTCTACCACTAATCACATACCCCAAAAAATGGCGGAACGCA
AGGCTGTCATCAAAAACGCGGACATGTCGGAGGACATGCAGCAAGACGCT
GTCGACTGCGCGTCGCAGGCACTGGACCAATTCAATATCGAGAAAGACAT
TGCAGCTTACGTGAAGAAGGAGTTTGATAAGAAGTACAACCCGACTTGGC
ATTGCATTGTTGGGAGGAACTTTGGTTCTTACGTCACGCATGAAACAAAG
CACTTCATTTATTTTTACTTGGGGCAGGTGGCTATTCTTTTATTCAAATC
GGGTTAATGCCAGAACTAGAGAGAAGCGTCAGCGGTTATTTACGGAATTT
TGTTTGTGTATGATAGAAAACGGGAGAAAAGGAATGGAGACGACAATAAG
GGAGGTGTATATTTTTTAGAGGAGTCAGATGCAAGGTCAGGATGCTGTCA
TAAGGAAAAGAAGTGGAAAAGTTAAATAAAGGAGATTGTCTTCCATCAGC
TTTGTGCTACTTACTTGTGGTGCGTCTTAGAGGGAAGGGGGACAAAGAAT
GGAAGAAGGGAAGATGCGTGCGTGTCTCCAATGCATCACGATAAGAGAGG
AGAATCAACGGATAATCAAGGAGACACGGGCGACAAGAAGCATACATGAG
ATAATATTATCGACGGGAATGGTGGCGGTGGTGGTGGTAGTGATGGCGTC
GGCGGCTGCTGCAGCTGCACGGAGAGCGGAGAGGAAAGAG
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Coding sequence (CDS) from alignment at scaffold_6:940707..941546-

>mRNA_3677 ID=mRNA_3677|Name=jgi.p|Nanoce1779_2|582995|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_6:940707..941546- (Nannochloropsis oceanica)
ATGGCGGAACGCAAGGCTGTCATCAAAAACGCGGACATGTCGGAGGACAT
GCAGCAAGACGCTGTCGACTGCGCGTCGCAGGCACTGGACCAATTCAATA
TCGAGAAAGACATTGCAGCTTACGTGAAGAAGGAGTTTGATAAGAAGTAC
AACCCGACTTGGCATTGCATTGTTGGGAGGAACTTTGGTTCTTACGTCAC
GCATGAAACAAAGCACTTCATTTATTTTTACTTGGGGCAGGTGGCTATTC
TTTTATTCAAATCGGGTTAA
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Synonyms
Publications