jgi.p|Nanoce1779_2|373968, mRNA_10295 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|373968
Unique NamemRNA_10295
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length429
Alignment locationscaffold_60:10256..10684 -

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Properties
Property NameValue
TranscriptId374054
TrackFilteredModels2
ProteinId373968
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:10256..10684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373968gene_10295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373968mRNA_10295-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10295CDS_10295Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10295 ID=mRNA_10295|Name=jgi.p|Nanoce1779_2|373968|organism=Nannochloropsis oceanica|type=mRNA|length=429bp
GCTGCACACTCATGATCTATTCTTTTGGTATCAAGCTTTATTGCCCCCAC
CTGGTTCTTAAGTCGCTCATTGCTTTCTTTCCTCCGCCATGTTGTTCAGA
AACCTCCTGTCTTTCTTTTTGGTACCCTGCATTCGAAAACTGCAAGGAGG
CAAAACTCATCTTAGATTGTGCACTCTCACACAAAATCATGATATTTTAT
ACATTTACAGAAATGGGCAGAGAAATGGGCAGAGAAATGGATGTCCCAAG
TGCCTCCTTGGTGAGCTAATGTTTGCGCTTCGAGATACTTTTTACCTTCG
AGTGATCACTCTAATCTTATATTTGTTGAGATGCCACATTCATGTCACTG
CGCTTATTTACAATTGGATTTTTATCTATTCACCTATCTTGTAGGCGAAC
TCAACATAACCAGATATCAAAAGGACACA
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protein sequence of jgi.p|Nanoce1779_2|373968

>mRNA_10295-protein ID=mRNA_10295-protein|Name=jgi.p|Nanoce1779_2|373968|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MLFRNLLSFFLVPCIRKLQGGKTHLRLCTLTQNHDILYIYRNGQRNGQRN
GCPKCLLGELMFALRDTFYLRVITLILYLLRCHIHVTALIYNWIFIYSPI
L*
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mRNA from alignment at scaffold_60:10256..10684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10295 ID=mRNA_10295|Name=jgi.p|Nanoce1779_2|373968|organism=Nannochloropsis oceanica|type=mRNA|length=429bp|location=Sequence derived from alignment at scaffold_60:10256..10684- (Nannochloropsis oceanica)
GCTGCACACTCATGATCTATTCTTTTGGTATCAAGCTTTATTGCCCCCAC
CTGGTTCTTAAGTCGCTCATTGCTTTCTTTCCTCCGCCATGTTGTTCAGA
AACCTCCTGTCTTTCTTTTTGGTACCCTGCATTCGAAAACTGCAAGGAGG
CAAAACTCATCTTAGATTGTGCACTCTCACACAAAATCATGATATTTTAT
ACATTTACAGAAATGGGCAGAGAAATGGGCAGAGAAATGGATGTCCCAAG
TGCCTCCTTGGTGAGCTAATGTTTGCGCTTCGAGATACTTTTTACCTTCG
AGTGATCACTCTAATCTTATATTTGTTGAGATGCCACATTCATGTCACTG
CGCTTATTTACAATTGGATTTTTATCTATTCACCTATCTTGTAGGCGAAC
TCAACATAACCAGATATCAAAAGGACACA
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Coding sequence (CDS) from alignment at scaffold_60:10256..10684-

>mRNA_10295 ID=mRNA_10295|Name=jgi.p|Nanoce1779_2|373968|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_60:10256..10684- (Nannochloropsis oceanica)
ATGTTGTTCAGAAACCTCCTGTCTTTCTTTTTGGTACCCTGCATTCGAAA
ACTGCAAGGAGGCAAAACTCATCTTAGATTGTGCACTCTCACACAAAATC
ATGATATTTTATACATTTACAGAAATGGGCAGAGAAATGGGCAGAGAAAT
GGATGTCCCAAGTGCCTCCTTGGTGAGCTAATGTTTGCGCTTCGAGATAC
TTTTTACCTTCGAGTGATCACTCTAATCTTATATTTGTTGAGATGCCACA
TTCATGTCACTGCGCTTATTTACAATTGGATTTTTATCTATTCACCTATC
TTGTAG
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Synonyms
Publications