jgi.p|Nanoce1779_2|663604, mRNA_10327 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|663604
Unique Name	mRNA_10327
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2006
Alignment location	scaffold_60:87408..89413 -

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Properties


Property Name	Value
TranscriptId	663690
Track	FilteredModels2
ProteinId	663604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:87408..89413 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663604	gene_10327	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663604	mRNA_10327-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10327	CDS_10327	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:87408..89413-
coding sequence from alignment at scaffold_60:87408..89413-

mRNA sequence

>mRNA_10327 ID=mRNA_10327|Name=jgi.p|Nanoce1779_2|663604|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp
TGCTGACAGGGCGCGAACGGATGTCACTCGAAGGCCGTGATCGTGATCCT
GTGCCTCATCACAGGCAGACCATGTCTAGTGGGCCTTTGCTTTGCTATTG
AGCCTGCGAAGGGGAACCTAATTTTATGTCCTGTTCCTTCACGATCTCTT
CGTCGCCATCCTGTCCCGGTGTGGCCGCTAAATTAATCGGCATGGTCACA
CAACGATAGCAGTTAGGAACGTAAGCTTGGTCCAGCACGCCTCGAGTCCG
AACCAGCGTTGTATGCTTGTGGTTTACTGCATGTTGGCATGAAGCCATTT
ACTTTATATGTATCCATACCGTCATGATCTAATCTTTATCTGCCTCACTC
CCTTTTCACTTTGTTTCCCCTTCTCTCCCTATTCTTCACACTGTAAAAAT
GCATAACCCTGGCAGCGAGTGAGCCCGTACACGAGGTGGCTCACCGCGTG
TGTCATGGAGCCCATCGACAACAATCCATTTCCCAACTCATGGCACCCAC
TTCACTTTCTTGCCCGGTCCGGCGACATCTCCGCCTTGGACACCCTCTTG
CATGAGAACCCCGACACGACGCGCCTCTGCAATCTCGAGACTGCCTGTGG
CAAGACTCCTCTAATGCTTGCCGCCGAGGAAGGGCACGTCGCTATGCTGA
ATTGGCTGCTCGACCATGGCGCCATCATCGATACCGCCCAGGCCAATACT
GGAAACACCGCTTTGTTCGTTGCCATATATCAACGCCAAGTTGCTGCGAT
GCAGGCTCTGCTGGCGCGGGGAAGCAATATTGCCCACGCAGATCGGTGGG
GCGCCACACCCTGGATCACGGCAGGCATGTCCAGGGACCCAACCATGTTT
CTTGCTCTGTTTGAGTACCTGAATAAAACAATTTCTCGGGAAGAATTGTT
AGAAAGCTATCCCCTCTACGCCGCGGGACCGAAGACCCCTGTCCTCACGT
ACCAAGTGCAACGCAACGATGTACATATGCTTCGAATGCTCTTGCGCCTC
GGTGCCAATCCATACAGTGAGGGCAGCACAAACGAGGCTATAAAATTAGC
GACAGCAGCAGCAGCTAGGGGAGAGAGGGGGGGAAAAGAGTGTTTGTTTT
TGTTGGAGGAGTGGGAGCGAGCCTACGTCCTGGCCAAGGTCCGGGCGACG
GCGGACGCGGCGGGGGAGGCGAGGGCGGGCGGGAAGGAGGGACCGCGGCA
GCTTTCAGCGTGGTTTAAGGAAGAGATGGATGTCACCGTACATGGGCAGT
ATGGGGAGGAGACGGAGGAAGAGGTAAGGATGGGGTGTGTGACGCGGTGG
GTTGTGAAGGTGATGGCAGACGATTTATTTCGGACATTGACTGAGTATAT
TGGGGAGAGGACGACGGGATTACCATTAGAGGTGGAGGAAATAAACCAAG
AGGAGCTTGATTGTTTATGTGTTGATGAAGACGACGGGGAGGAGGCTTTT
GAAGACGGGGAGGAGGCGTTTGACTGGTGACACAGCGTGAGATTGACGGC
GTATATGTCAAGTAAGGAAACTTATTTTCGCGCGCAATTGTGCCATTGTT
CCGAAAGAGGCCTTCCACAGGGGCCCGAATTAAAGTTTTGTGGTTGAGCC
CACGACTTCTCATGGGCATTGGAAAAGTGTGTAGCAAACAATATGACTAC
GCGGATCATCAATAATCATTGACCATGAAACTGGATGTAATTAAAGGGAC
TACAGTGAGATAGACAAGATCGCCGACTTGACGATTCCCCACCTGTTCTC
GTGAGCTTGGTCACGATGGTTATGTACAGTCGCTACCAAAGGGGCGCCTG
CCACATGGGAAGACTAAAACTCACTTTGAAACCACCAAAGCACTGCATGA
AGGTATTGGGTAACCCTGCCTTCCCAGCCTTTGTTTTAAATTCGTTTGCG
TGCTTGCGTTTAAAACGGGTCTGATTATTTCATTCCCCCCCCCGGTGTTG
ATTACTGTGGTATACAACACCCTTGGCCCGTCTTCCTCTCCCCTCCCTTT
TCCTCG

protein sequence of jgi.p|Nanoce1779_2|663604

>mRNA_10327-protein ID=mRNA_10327-protein|Name=jgi.p|Nanoce1779_2|663604|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MEPIDNNPFPNSWHPLHFLARSGDISALDTLLHENPDTTRLCNLETACGK
TPLMLAAEEGHVAMLNWLLDHGAIIDTAQANTGNTALFVAIYQRQVAAMQ
ALLARGSNIAHADRWGATPWITAGMSRDPTMFLALFEYLNKTISREELLE
SYPLYAAGPKTPVLTYQVQRNDVHMLRMLLRLGANPYSEGSTNEAIKLAT
AAAARGERGGKECLFLLEEWERAYVLAKVRATADAAGEARAGGKEGPRQL
SAWFKEEMDVTVHGQYGEETEEEVRMGCVTRWVVKVMADDLFRTLTEYIG
ERTTGLPLEVEEINQEELDCLCVDEDDGEEAFEDGEEAFDW*

mRNA from alignment at scaffold_60:87408..89413-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10327 ID=mRNA_10327|Name=jgi.p|Nanoce1779_2|663604|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp|location=Sequence derived from alignment at scaffold_60:87408..89413- (Nannochloropsis oceanica)
TGCTGACAGGGCGCGAACGGATGTCACTCGAAGGCCGTGATCGTGATCCT
GTGCCTCATCACAGGCAGACCATGTCTAGTGGGCCTTTGCTTTGCTATTG
AGCCTGCGAAGGGGAACCTAATTTTATGTCCTGTTCCTTCACGATCTCTT
CGTCGCCATCCTGTCCCGGTGTGGCCGCTAAATTAATCGGCATGGTCACA
CAACGATAGCAGTTAGGAACGTAAGCTTGGTCCAGCACGCCTCGAGTCCG
AACCAGCGTTGTATGCTTGTGGTTTACTGCATGTTGGCATGAAGCCATTT
ACTTTATATGTATCCATACCGTCATGATCTAATCTTTATCTGCCTCACTC
CCTTTTCACTTTGTTTCCCCTTCTCTCCCTATTCTTCACACTGTAAAAAT
GCATAACCCTGGCAGCGAGTGAGCCCGTACACGAGGTGGCTCACCGCGTG
TGTCATGGAGCCCATCGACAACAATCCATTTCCCAACTCATGGCACCCAC
TTCACTTTCTTGCCCGGTCCGGCGACATCTCCGCCTTGGACACCCTCTTG
CATGAGAACCCCGACACGACGCGCCTCTGCAATCTCGAGACTGCCTGTGG
CAAGACTCCTCTAATGCTTGCCGCCGAGGAAGGGCACGTCGCTATGCTGA
ATTGGCTGCTCGACCATGGCGCCATCATCGATACCGCCCAGGCCAATACT
GGAAACACCGCTTTGTTCGTTGCCATATATCAACGCCAAGTTGCTGCGAT
GCAGGCTCTGCTGGCGCGGGGAAGCAATATTGCCCACGCAGATCGGTGGG
GCGCCACACCCTGGATCACGGCAGGCATGTCCAGGGACCCAACCATGTTT
CTTGCTCTGTTTGAGTACCTGAATAAAACAATTTCTCGGGAAGAATTGTT
AGAAAGCTATCCCCTCTACGCCGCGGGACCGAAGACCCCTGTCCTCACGT
ACCAAGTGCAACGCAACGATGTACATATGCTTCGAATGCTCTTGCGCCTC
GGTGCCAATCCATACAGTGAGGGCAGCACAAACGAGGCTATAAAATTAGC
GACAGCAGCAGCAGCTAGGGGAGAGAGGGGGGGAAAAGAGTGTTTGTTTT
TGTTGGAGGAGTGGGAGCGAGCCTACGTCCTGGCCAAGGTCCGGGCGACG
GCGGACGCGGCGGGGGAGGCGAGGGCGGGCGGGAAGGAGGGACCGCGGCA
GCTTTCAGCGTGGTTTAAGGAAGAGATGGATGTCACCGTACATGGGCAGT
ATGGGGAGGAGACGGAGGAAGAGGTAAGGATGGGGTGTGTGACGCGGTGG
GTTGTGAAGGTGATGGCAGACGATTTATTTCGGACATTGACTGAGTATAT
TGGGGAGAGGACGACGGGATTACCATTAGAGGTGGAGGAAATAAACCAAG
AGGAGCTTGATTGTTTATGTGTTGATGAAGACGACGGGGAGGAGGCTTTT
GAAGACGGGGAGGAGGCGTTTGACTGGTGACACAGCGTGAGATTGACGGC
GTATATGTCAAGTAAGGAAACTTATTTTCGCGCGCAATTGTGCCATTGTT
CCGAAAGAGGCCTTCCACAGGGGCCCGAATTAAAGTTTTGTGGTTGAGCC
CACGACTTCTCATGGGCATTGGAAAAGTGTGTAGCAAACAATATGACTAC
GCGGATCATCAATAATCATTGACCATGAAACTGGATGTAATTAAAGGGAC
TACAGTGAGATAGACAAGATCGCCGACTTGACGATTCCCCACCTGTTCTC
GTGAGCTTGGTCACGATGGTTATGTACAGTCGCTACCAAAGGGGCGCCTG
CCACATGGGAAGACTAAAACTCACTTTGAAACCACCAAAGCACTGCATGA
AGGTATTGGGTAACCCTGCCTTCCCAGCCTTTGTTTTAAATTCGTTTGCG
TGCTTGCGTTTAAAACGGGTCTGATTATTTCATTCCCCCCCCCGGTGTTG
ATTACTGTGGTATACAACACCCTTGGCCCGTCTTCCTCTCCCCTCCCTTT
TCCTCG

Coding sequence (CDS) from alignment at scaffold_60:87408..89413-

>mRNA_10327 ID=mRNA_10327|Name=jgi.p|Nanoce1779_2|663604|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_60:87408..89413- (Nannochloropsis oceanica)
ATGGAGCCCATCGACAACAATCCATTTCCCAACTCATGGCACCCACTTCA
CTTTCTTGCCCGGTCCGGCGACATCTCCGCCTTGGACACCCTCTTGCATG
AGAACCCCGACACGACGCGCCTCTGCAATCTCGAGACTGCCTGTGGCAAG
ACTCCTCTAATGCTTGCCGCCGAGGAAGGGCACGTCGCTATGCTGAATTG
GCTGCTCGACCATGGCGCCATCATCGATACCGCCCAGGCCAATACTGGAA
ACACCGCTTTGTTCGTTGCCATATATCAACGCCAAGTTGCTGCGATGCAG
GCTCTGCTGGCGCGGGGAAGCAATATTGCCCACGCAGATCGGTGGGGCGC
CACACCCTGGATCACGGCAGGCATGTCCAGGGACCCAACCATGTTTCTTG
CTCTGTTTGAGTACCTGAATAAAACAATTTCTCGGGAAGAATTGTTAGAA
AGCTATCCCCTCTACGCCGCGGGACCGAAGACCCCTGTCCTCACGTACCA
AGTGCAACGCAACGATGTACATATGCTTCGAATGCTCTTGCGCCTCGGTG
CCAATCCATACAGTGAGGGCAGCACAAACGAGGCTATAAAATTAGCGACA
GCAGCAGCAGCTAGGGGAGAGAGGGGGGGAAAAGAGTGTTTGTTTTTGTT
GGAGGAGTGGGAGCGAGCCTACGTCCTGGCCAAGGTCCGGGCGACGGCGG
ACGCGGCGGGGGAGGCGAGGGCGGGCGGGAAGGAGGGACCGCGGCAGCTT
TCAGCGTGGTTTAAGGAAGAGATGGATGTCACCGTACATGGGCAGTATGG
GGAGGAGACGGAGGAAGAGGTAAGGATGGGGTGTGTGACGCGGTGGGTTG
TGAAGGTGATGGCAGACGATTTATTTCGGACATTGACTGAGTATATTGGG
GAGAGGACGACGGGATTACCATTAGAGGTGGAGGAAATAAACCAAGAGGA
GCTTGATTGTTTATGTGTTGATGAAGACGACGGGGAGGAGGCTTTTGAAG
ACGGGGAGGAGGCGTTTGACTGGTGA

Synonyms

Publications