jgi.p|Nanoce1779_2|611991, mRNA_10641 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611991
Unique NamemRNA_10641
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1269
Alignment locationscaffold_61:9793..11061 -

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Properties
Property NameValue
TranscriptId612077
TrackFilteredModels2
ProteinId611991
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:9793..11061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611991gene_10641Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611991mRNA_10641-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10641CDS_10641Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10641 ID=mRNA_10641|Name=jgi.p|Nanoce1779_2|611991|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
CAGCATGACAGTCGTACAATGCACCGTTCCCAGGATGCACAGGACGATGA
GAATAACAATATTTATCGTCGTTTTGGTCACCCTCATCATGAACAAGCGA
CTTATTGGTGTGCGAAACGATCCAATACTTGCATTGAGTCGGACTCCGTG
GAGGACTTATGGACACGTACATATAGCAAAAACAGCGGGCACCACGCTAA
ATGGAGAGCTGGCAGCACATTTCGAACGCGTCTGCGGCCATAAAGGGTAC
TCATTCGATTTTGCCCGTGCTATCCAGCGATATACGAATAAGCTGCTGGA
AGATTCTTACTCAAGCATTATGCAAGGATATTCTCGTCTGCGAGTGCCTG
AAAAGATTATGGATGAAATCGGTTACGAAGACTGCGATTGGATAAGCGTG
GAGAGACATGCTATATTTTGGTCTCAATTCGCATCATGGCCGCTCCCTTT
GGAGCTACATTTGCCCTGTAGAGATCCTCTCGACCACCTTATGTCACAGT
GTAATTGGAGGAATATTGTATTTGATTGTGCTAGTGAGAACATGGAGCAA
CAAATCAAATCTTGTGTCTTCGAAGAATTGATTCGATTCTCCATCGATCT
CGCGAATACTACTAACATCGACCTGAAGTGCTACAACTATAATAAAACCT
TTCCCAATTACATCCAGTACATGGCGACGAAACTTCAAAGGAAGAGAATA
GAGAGCGAGTATGTGTTTCGAGCCACCAACAAGGATAGAGCAAAAGAACA
GGAGTGCATATGGGGAGATGCGGACTTGCAGGCAGCCGTTCGTACATACC
TTCTGTCAAACTATGATTATTACGGCTTTTGCGACACTTGCATTGGTTCC
AAAAGCGAGTTGCCCTTAGGAAAAACACAAGCATCGAATGCACCTGGAGA
GATGGAGAAGAAAGGATGAGAGGGTGAATAACGAAAGAAAAAGGAAAGAG
GGAGATGAGAGGGGAGGCGAAGAAGAGAGGAATGAAGACAAAGTGGAAGG
AGAGGGAAGAAGGGAGGGAATGGAGGAGGGGGGAGGAATGGAAAGGGGAC
AGAGGAAGAAGGGATAGAGGAAGAGGGAAAGGGAGAGACAGAGAAGCATG
AACGGATGAGATTGAGGAAGGGGAAGGATGCAGGAGGGAGTGAGAAGGTT
GAAATGGAGGAATGGGACGGCTGGAGGAGGGAAAGAGAGAGAGGGGCTTG
GGGAAAGGAGCAGGGCGTAGCATGAATATTCCCTCGTGCCCTCTTCAAAG
AGACAATGAAAAAAAATCC
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protein sequence of jgi.p|Nanoce1779_2|611991

>mRNA_10641-protein ID=mRNA_10641-protein|Name=jgi.p|Nanoce1779_2|611991|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MTVVQCTVPRMHRTMRITIFIVVLVTLIMNKRLIGVRNDPILALSRTPWR
TYGHVHIAKTAGTTLNGELAAHFERVCGHKGYSFDFARAIQRYTNKLLED
SYSSIMQGYSRLRVPEKIMDEIGYEDCDWISVERHAIFWSQFASWPLPLE
LHLPCRDPLDHLMSQCNWRNIVFDCASENMEQQIKSCVFEELIRFSIDLA
NTTNIDLKCYNYNKTFPNYIQYMATKLQRKRIESEYVFRATNKDRAKEQE
CIWGDADLQAAVRTYLLSNYDYYGFCDTCIGSKSELPLGKTQASNAPGEM
EKKG*
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mRNA from alignment at scaffold_61:9793..11061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10641 ID=mRNA_10641|Name=jgi.p|Nanoce1779_2|611991|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at scaffold_61:9793..11061- (Nannochloropsis oceanica)
CAGCATGACAGTCGTACAATGCACCGTTCCCAGGATGCACAGGACGATGA
GAATAACAATATTTATCGTCGTTTTGGTCACCCTCATCATGAACAAGCGA
CTTATTGGTGTGCGAAACGATCCAATACTTGCATTGAGTCGGACTCCGTG
GAGGACTTATGGACACGTACATATAGCAAAAACAGCGGGCACCACGCTAA
ATGGAGAGCTGGCAGCACATTTCGAACGCGTCTGCGGCCATAAAGGGTAC
TCATTCGATTTTGCCCGTGCTATCCAGCGATATACGAATAAGCTGCTGGA
AGATTCTTACTCAAGCATTATGCAAGGATATTCTCGTCTGCGAGTGCCTG
AAAAGATTATGGATGAAATCGGTTACGAAGACTGCGATTGGATAAGCGTG
GAGAGACATGCTATATTTTGGTCTCAATTCGCATCATGGCCGCTCCCTTT
GGAGCTACATTTGCCCTGTAGAGATCCTCTCGACCACCTTATGTCACAGT
GTAATTGGAGGAATATTGTATTTGATTGTGCTAGTGAGAACATGGAGCAA
CAAATCAAATCTTGTGTCTTCGAAGAATTGATTCGATTCTCCATCGATCT
CGCGAATACTACTAACATCGACCTGAAGTGCTACAACTATAATAAAACCT
TTCCCAATTACATCCAGTACATGGCGACGAAACTTCAAAGGAAGAGAATA
GAGAGCGAGTATGTGTTTCGAGCCACCAACAAGGATAGAGCAAAAGAACA
GGAGTGCATATGGGGAGATGCGGACTTGCAGGCAGCCGTTCGTACATACC
TTCTGTCAAACTATGATTATTACGGCTTTTGCGACACTTGCATTGGTTCC
AAAAGCGAGTTGCCCTTAGGAAAAACACAAGCATCGAATGCACCTGGAGA
GATGGAGAAGAAAGGATGAGAGGGTGAATAACGAAAGAAAAAGGAAAGAG
GGAGATGAGAGGGGAGGCGAAGAAGAGAGGAATGAAGACAAAGTGGAAGG
AGAGGGAAGAAGGGAGGGAATGGAGGAGGGGGGAGGAATGGAAAGGGGAC
AGAGGAAGAAGGGATAGAGGAAGAGGGAAAGGGAGAGACAGAGAAGCATG
AACGGATGAGATTGAGGAAGGGGAAGGATGCAGGAGGGAGTGAGAAGGTT
GAAATGGAGGAATGGGACGGCTGGAGGAGGGAAAGAGAGAGAGGGGCTTG
GGGAAAGGAGCAGGGCGTAGCATGAATATTCCCTCGTGCCCTCTTCAAAG
AGACAATGAAAAAAAATCC
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Coding sequence (CDS) from alignment at scaffold_61:9793..11061-

>mRNA_10641 ID=mRNA_10641|Name=jgi.p|Nanoce1779_2|611991|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_61:9793..11061- (Nannochloropsis oceanica)
ATGACAGTCGTACAATGCACCGTTCCCAGGATGCACAGGACGATGAGAAT
AACAATATTTATCGTCGTTTTGGTCACCCTCATCATGAACAAGCGACTTA
TTGGTGTGCGAAACGATCCAATACTTGCATTGAGTCGGACTCCGTGGAGG
ACTTATGGACACGTACATATAGCAAAAACAGCGGGCACCACGCTAAATGG
AGAGCTGGCAGCACATTTCGAACGCGTCTGCGGCCATAAAGGGTACTCAT
TCGATTTTGCCCGTGCTATCCAGCGATATACGAATAAGCTGCTGGAAGAT
TCTTACTCAAGCATTATGCAAGGATATTCTCGTCTGCGAGTGCCTGAAAA
GATTATGGATGAAATCGGTTACGAAGACTGCGATTGGATAAGCGTGGAGA
GACATGCTATATTTTGGTCTCAATTCGCATCATGGCCGCTCCCTTTGGAG
CTACATTTGCCCTGTAGAGATCCTCTCGACCACCTTATGTCACAGTGTAA
TTGGAGGAATATTGTATTTGATTGTGCTAGTGAGAACATGGAGCAACAAA
TCAAATCTTGTGTCTTCGAAGAATTGATTCGATTCTCCATCGATCTCGCG
AATACTACTAACATCGACCTGAAGTGCTACAACTATAATAAAACCTTTCC
CAATTACATCCAGTACATGGCGACGAAACTTCAAAGGAAGAGAATAGAGA
GCGAGTATGTGTTTCGAGCCACCAACAAGGATAGAGCAAAAGAACAGGAG
TGCATATGGGGAGATGCGGACTTGCAGGCAGCCGTTCGTACATACCTTCT
GTCAAACTATGATTATTACGGCTTTTGCGACACTTGCATTGGTTCCAAAA
GCGAGTTGCCCTTAGGAAAAACACAAGCATCGAATGCACCTGGAGAGATG
GAGAAGAAAGGATGA
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Synonyms
Publications